BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472748
Length=1780
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26610.1 | Symbols: | C2H2-like zinc finger protein | chr1:... 2752 0.0
AT1G26590.1 | Symbols: | C2H2-like zinc finger protein | chr1:... 150 4e-35
> AT1G26610.1 | Symbols: | C2H2-like zinc finger protein | chr1:9193350-9195280
FORWARD LENGTH=1854
Length=1854
Score = 2752 bits (1490), Expect = 0.0
Identities = 1701/1800 (95%), Gaps = 26/1800 (1%)
Strand=Plus/Plus
Query 1 TTTTTATTTTATTTCTTTCATTC-CAAACCCCAAAAAGAAAGTAAATCTGCTAACTTTAG 59
|||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 60 TTTTTATTTTATATCTTTCATTCGC-AACCCCAAAAAGAAAGTAAATCTGCTAACTTTAG 118
Query 60 ATATTGAGGAAATTTCAAAGTCAGTTTTATTTGTTTCCTGTTTTTGTGTTCTCTTTGCCT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATATTGAGGAAATTTCAAAGTCAGTTTTATTTGTTTCCTGTTTTTGTGTTCTCTTTGCCT 178
Query 120 TGATGGTAGGATCTGTACTTAACAAGACTACTGTTACATCTCCAAACTCTGATCGCTGGG 179
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 179 TGATGGTAGGATCTGTAGTTAACAAGACTAGTGTTACATCTCCAAACTCTGATCGCTGGA 238
Query 180 AAAGTATCAAGCTTTCTGCTTGATTCTCTTTCTTAGCATCTGAT-AAGCTTTCTTTGAAG 238
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 239 AAAGTATCAAGCTTTCTGCTTGATTCTCTTTCTTAGCATCTG-TCAAGCTTTCTTTGAAG 297
Query 239 ATAATTTTCAGATGGAGCAGTTGAAAGAGAGGAGGTTTGTGTGTAAGTTCTGTAGCAAGA 298
|||| ||| ||||||||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 298 ATAAATTTGAGATGGAGCAGTTCAAAGAGAGGAAGTTTGTTTGTAAGTTCTGTAGCAAGA 357
Query 299 GGTTTCCTTGTGGGAAATCACTTGGAGGTCACATCAGAACTCACATGAATGAGAATTCAG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GGTTTCCTTGTGGGAAATCACTTGGAGGTCACATCAGAACTCACATGAATGAGAATTCAG 417
Query 359 CTGATTCAGATGAGGATGAGGCTAATAAGCTCAAGATGATTGATGAAAATGGTGGTCAGT 418
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 418 CTGATTCAGATGAAGATGAGGCTGATAAGCTCAAGATGATTGATGAAAATGGTGGTCAAT 477
Query 419 CTAGTTATGGTCTCAGAGAGAATCCTAAAAAGAATAAGAGGTTTGTGGATCACAGACAGA 478
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 478 CTAGTTATGGTCTGAGAGAGAATCCTAAAAAGAACAAGAGGTTTGTGGATCACAGACAGA 537
Query 479 TGATGGCTTTGAAACAGCAGCAGCAGCA--A-CAACTACAACAGCTGCTTTGTTGCAGAG 535
| |||||| ||||||||||||||||||| | ||||| ||| |||||| | |||||||||
Sbjct 538 TTATGGCTCTGAAACAGCAGCAGCAGCAGCAACAACTTCAAGAGCTGCGTCGTTGCAGAG 597
Query 536 AATGTGGTAAAGGTTTTGTTTCTTCTAAAGCTCTTTGTGGTCACATGGCTAGTCACTCTG 595
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 598 AATGTGGTAAAGGTTTTGTTTCTTCTAAAGCTCTTTGTGGTCACATGGCTTGTCACTCTG 657
Query 596 AGAGAGAGAAGATTGTTATGGATAGTCAATCTGATACTGAGGCTTCTTCCTCTCCTATCA 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AGAGAGAGAAGATTGTTATGGATAGTCAATCTGATACTGAGGCTTCTTCCTCTCCTATCA 717
Query 656 GAAGAAGATCCAAGAGAGTTGTTGTGAAACATCACCACAAAGATGCTTTTGTAGTTGGTG 715
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 718 GAAGAAGATCCAAGAGAGTTGTTGTGAAACCTCACCACAAAGCTGCTTTTGTAGTTGGTG 777
Query 716 GTAATGGTATCATGAATCAATCGATTTCAGCATCTTCTGATGCTTCTGAGATTGAGCCTG 775
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 778 GTAATGGTATTATGAATCAATCTATTTCAGCTTCTTCTGATGCTTCTGAGATTGAGCCTG 837
Query 776 AACAGGAGGAAATGGCAAGGTCTTTGATGATGCTGTCGAGGGATTCTAGTTTCAAGAAAG 835
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 838 AACAGGAGGAAATGGCAAGGTCTTTGATGATGCTTTCGAGGGATTCTAGTTTTAAGAAAG 897
Query 836 AACATAACTCTTTGGCTGAGTCATCTGACAACAACTCTGTGATTCTTGAGACTAAGTCAT 895
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GACATAACTCTTTGGCTGAGTCATCTGACAACAACTCTGTGATTCTTGAGACTAAGTCAT 957
Query 896 CTTCAGGAGAACAGCTTAAGATGTTCAATGTGAAGAATGTTGAGGAGT-ACTGTAAGAAG 954
||||||| || ||| |||||||||||||||||||||||||||| |||| | |||||||||
Sbjct 958 CTTCAGGTGAGCAGGTTAAGATGTTCAATGTGAAGAATGTTGAAGAGTTA-TGTAAGAAG 1016
Query 955 AACAAACTTGTAGTTGATAACCAGATGAAAG-CTGGTGAGGATGATGGTGATATT-ATCT 1012
|||||||||||||||||||||||||||| | ||||||| || |||||||| || || |
Sbjct 1017 AACAAACTTGTAGTTGATAACCAGATGAG-GTCTGGTGAAGAAAATGGTGATGTTCAT-T 1074
Query 1013 ATGATTCAGATAATTCTGATTCTGGCTACTTCAGGAATGGACCAAAGAAGTTGGACTCAG 1072
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 ATGATTCAGATAATTCTGACTCTGGCTACTTCAGGAATGGACCAAAGAAGTTGGACTCAG 1134
Query 1073 ATGTTTCTGTTGATGGGTTCTTTAGGAACAAAGCTGTAATGGGATCTGGATCCGGATTCA 1132
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1135 ATGTTTCTGTTGATGGGTTCTTTAGGAACAAAACAATAATGGGATCTGGATCCGGATTCA 1194
Query 1133 ACAGCTCCCCAACAAAACAAAATATGAACATGAACAGATTCAAGAAGGAATGGTATAAGG 1192
|||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||
Sbjct 1195 ACAGCTCCCCAACAAAACAAGATAGGGACATGAACAGATTCAGGAAGGAATGGTATAAGG 1254
Query 1193 AAGGAGGGTCAGGGTCAGGATCAGG-TC-G-T--T-CTTCTACAAAGTATGATCTGAGGA 1246
||||||||||||||||||||||||| || | | | ||||||||||||||||||||||||
Sbjct 1255 AAGGAGGGTCAGGGTCAGGATCAGGATCAGGTCGTTCTTCTACAAAGTATGATCTGAGGA 1314
Query 1247 ATAGCAAAAGAGGGTTTCCTTCTTACGGTCGAAAGAAAATCAAGTACGAGTTCACTGAAT 1306
| ||||||||||| ||||||||| | ||||| |||||||||||||| |||||||||||||
Sbjct 1315 AAAGCAAAAGAGGTTTTCCTTCTCATGGTCGTAAGAAAATCAAGTATGAGTTCACTGAAT 1374
Query 1307 CTGTCTATGATAGTGGTGAGCATAGCTTGGAAACTGATTCTTGCGCGGACACAAACCGAA 1366
|||||||||| |||||||||||||||||||||||||| ||||| |||||||||||| |||
Sbjct 1375 CTGTCTATGACAGTGGTGAGCATAGCTTGGAAACTGACTCTTGTGCGGACACAAACAGAA 1434
Query 1367 CTATCAAGACTCATAGTAAGTC-CGCAATGGTTAATAAAGCAAGTGGTGCAAAGGAGAAA 1425
||||||||| |||||||||||| | |||||||||| ||||||| ||||||||| |||||
Sbjct 1435 CTATCAAGATTCATAGTAAGTCTC-CAATGGTTAAGAAAGCAAACGGTGCAAAGAAGAAA 1493
Query 1426 AACAAAGGTCACGAGTGTCCGATTTGCTTCAGGGTGTTCAAATCAGGACAAGCTTTAGGT 1485
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 AGCAAAGGTCACGAGTGTCCGATTTGCTTCAGGGTGTTCAAATCAGGACAAGCTTTAGGA 1553
Query 1486 GGTCACAAGAGATCACATTTCATTGGGAATCAAGAACACAGGACTTTGGTGATTCAACAC 1545
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GGTCACAAGAGATCACATTTCATTGGGAATCAAGAACACAGGACTTTGGTGATTCAACAT 1613
Query 1546 CAAGTATCTCATGAGATGCATACACTCATCGATCTCAATCTTCCTGCTCCTATTGATGAA 1605
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 CAAGTAGCTCATGAGATGCATACACTCATCGATCTCAATCTTCCTGCTCCTATTGATGAA 1673
Query 1606 TGAT-TTAGTAA--CCGAAACCGTGATTGTGTTCTCTTTATTGTTTCCTTTCTGTTTATT 1662
|||| ||| ||| ||||||||| | || | |||||||||||||||||||||||||||||
Sbjct 1674 TGATCTTACTAAAACCGAAACCGCGGTTTTCTTCTCTTTATTGTTTCCTTTCTGTTTATT 1733
Query 1663 GATTCTTTTGCTTCAGATTCAAGAATGCTTTTGGTTTGGAAGGTAAATCAAA-TCATCTT 1721
|||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||
Sbjct 1734 GATTCTTTTGCTTCAGATTCAAGAATGCTTTTGGTTTGCAAGGCAAATCAAAGTCATCTT 1793
Query 1722 TTATTTGTTCATAATCATATAAA-GCTTGGTGCTTTTGTGGCAGAGTTCAATGATAATTC 1780
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1794 TTATTTGTTCATAATCATATAAAAGCTTGGTGCTTTTGTGGCAGAGTTCAATGATACTTC 1853
> AT1G26590.1 | Symbols: | C2H2-like zinc finger protein | chr1:9189624-9190709
FORWARD LENGTH=1086
Length=1086
Score = 150 bits (81), Expect = 4e-35
Identities = 117/134 (87%), Gaps = 4/134 (3%)
Strand=Plus/Plus
Query 1379 ATAGTAAGTCCGCAATGGTTAATAAAGCAA-GTGGTGCA-AAGGAGAAAAACAAAGGTCA 1436
|||| || ||| |||||||||| |||| || |||||| | |||| ||| | |||||||||
Sbjct 887 ATAGCAAATCCTCAATGGTTAAGAAAG-AAGGTGGTG-AGAAGGTGAAGAGCAAAGGTCA 944
Query 1437 CGAGTGTCCGATTTGCTTCAGGGTGTTCAAATCAGGACAAGCTTTAGGTGGTCACAAGAG 1496
||||| || |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 945 TGAGTGCCCAATTTGCTTCAGGATGTTCAAATCAGGCCAAGCTTTAGGTGGTCACAAGAG 1004
Query 1497 ATCACATTTCATTG 1510
|||||||| |||||
Sbjct 1005 ATCACATTCCATTG 1018
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88051755930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5