BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472749
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26600.1 | Symbols: CLE9 | CLAVATA3/ESR-RELATED 9 | chr1:919... 802 0.0
> AT1G26600.1 | Symbols: CLE9 | CLAVATA3/ESR-RELATED 9 | chr1:9191607-9192401
FORWARD LENGTH=795
Length=795
Score = 802 bits (434), Expect = 0.0
Identities = 518/557 (93%), Gaps = 11/557 (2%)
Strand=Plus/Plus
Query 1 CTCTCGTTTTTAAACTT-TTCCTTCTCCAAGAACACTTCTCACTTtctctctctcgctct 59
|||||| |||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1 CTCTCGATTTTAAACTTCTT-CTTCTCCAAGACCACTTCTCACTTTCTCTCTCTCGCTCT 59
Query 60 ctctTGGAAACCAAAACAATGACGACGACGACTCACCTGAATCGTCTGATCTTGATCTCT 119
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 60 CTCTTGGAAACCAAAACAAT---GACGATGACTCACCTGAATCGTCTGATCTTGATCTCT 116
Query 120 CtttttttAGTCTTTTTCCTTCTCAAAACCTCCACCGCTTCTTCAACCGTCGT---CGAA 176
||| | || |||| ||| ||||||||| ||||||||||||||||||||||||| ||||
Sbjct 117 CTTCTCTTCGTCTCTTTACTTCTCAAATCCTCCACCGCTTCTTCAACCGTCGTCGACGAA 176
Query 177 GGAAACAGAACATCAAGAAACTTCCGTTACCGAACTCACCGATTCGTCCCGAGGGTTAAC 236
||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||
Sbjct 177 GGAAACAGAACATCAAGAAACTTCCGTTACCGAACGCACCGATTCGTTCCGAGGTTTAAC 236
Query 237 CACCACCCTTACCACGTGACTCCTCACCGTTCGTGCGATTCCTTCACTCGTCCGTACGCG 296
||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 237 CACCACCCTTACCACGTGACTCCTCACCGTTCGTGTGATTCCTTCATTCGTCCTTACGCG 296
Query 297 CGTTCTATGTGCATTGAGCTTCAGAGAATCCACCGTAGCAGTCGGAAGCAGCCACTTCTT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGTTCTATGTGCATTGAGCTTCAGAGAATCCACCGTAGCAGTCGGAAGCAGCCACTTCTT 356
Query 357 TCTCCTCCTCCTCCAGAGATTGACCCAAGGTACGGTGTCGACAAAAGACTCGTCCCCTCT 416
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 357 TCTCCTCCTCCTCCGGAGATTGATCCAAGGTACGGCGTCGACAAAAGACTCGTCCCCTCT 416
Query 417 GGTCCAAACCCGCTTCACAACTAAAACCCTATCCTCAAGTTTCTATATATACATAATATA 476
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 417 GGTCCAAACCCGCTTCACAACTAAAACCATATCCTCAAGTTTCTATACATACATA-TATA 475
Query 477 CAGAGACATTTGTCACACATTTTCTAATT-AACACATTTCTTGGCGTTTCTTCGAGAGAG 535
|||| |||||||||||| ||||||||||| ||| | ||||| || ||| ||||||||||
Sbjct 476 CAGAAACATTTGTCACATATTTTCTAATTTAACTCGTTTCTCGGA-TTTGTTCGAGAGAG 534
Query 536 ATTTGTGTATTTTATAG 552
||||||||| |||||||
Sbjct 535 ATTTGTGTACTTTATAG 551
Score = 111 bits (60), Expect = 7e-24
Identities = 72/78 (92%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 553 GTTATTTCTTCTTGGTCTTCTTTGCGGAAATTTCTTATTTCTACTCTCTTGATCTTGTAA 612
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 583 GTTAGTTCTTCTTGGTCTTCTTTGCGGAAATTTCTTATTTCTACTTTCTTGATCTTGTAA 642
Query 613 TTGAATCCTACGTTATGG 630
| || || | ||||||||
Sbjct 643 TGGAGTCTTGCGTTATGG 660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32049385786
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5