BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472750
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26590.1 | Symbols: | C2H2-like zinc finger protein | chr1:... 1336 0.0
> AT1G26590.1 | Symbols: | C2H2-like zinc finger protein | chr1:9189624-9190709
FORWARD LENGTH=1086
Length=1086
Score = 1336 bits (723), Expect = 0.0
Identities = 1004/1131 (89%), Gaps = 54/1131 (5%)
Strand=Plus/Plus
Query 1 ATGGAGGAAGGGAAAGAGAAGTT-GTTTACGTGCAAGTACTGTCACAAGAAGTTTCCTTC 59
|||||||||||||||||||| || |||| ||||||||||||| |||||| |||||||||
Sbjct 1 ATGGAGGAAGGGAAAGAGAA-TTCGTTTTTGTGCAAGTACTGTTACAAGACGTTTCCTTC 59
Query 60 TGGGAAATCACTTGGAGGTCACATTAGAATTCATACCAACGAGAATTCAGTTGGTTCTGA 119
||||||| |||| || |||||||||||||||||||| |||||||||||| | | ||
Sbjct 60 TGGGAAAGCACTCGGTGGTCACATTAGAATTCATACGAACGAGAATTCA----G-T-TG- 112
Query 120 TCGTTACAATGCCAAGAAGAAGAAGAAGAGGTTGGTGGATCAGAGAAAGATGATGGCTCA 179
||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 113 --GTTACAATGGC---AATAAGAAGAAGAGGTTGGTGGATCAGAGAAAGATGATGGCTCA 167
Query 180 GAAACAGAAGCAACAACAACAAGTTGGTTGCAGAGAATGTGGTAAAGTGTTCGTTTCTTT 239
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 168 GAAACATAAGCAACAACAACAAGTTGGTTGCAGAGAATGTGGTAGAGTGTTCGTTTCTTT 227
Query 240 GAAAGCTCTTAGAGGTCACATGGCTTGTCATCACTGTGAGGGAAAGAAGATGTTGAT-G- 297
||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |
Sbjct 228 GAAAGCTCTTAGAGGTCACATGGCTTG---TCACGGTGAGGTAAAGAAGATGTTGATGGA 284
Query 298 -G---ATAGCCAATCTGATACTGAGACTGAGACTTCATCAGCTCCTATCAGGAAAAGATC 353
| ||||||||||||||||||| | ||||||||| ||||||||||| |||||||||||
Sbjct 285 TGATAATAGCCAATCTGATACTGAAAGTGAGACTTCCTCAGCTCCTATGAGGAAAAGATC 344
Query 354 CAAGAGGGTGGTGATGAAACGATCCAATTCTGAATCTTTTAGTAATGGGAGCTCCTCTTT 413
|||||||||||| ||||||| ||| |||||||||||||| |||||||||||||| |||||
Sbjct 345 CAAGAGGGTGGTCATGAAACAATCAAATTCTGAATCTTTGAGTAATGGGAGCTCGTCTTT 404
Query 414 TGTTTCTGAGATTGACCAAGAA-GTTAGGGATGCGGCTGATACTTTGATGTTTTTGTCGA 472
|| ||||||||||||||||||| | |||||||| |||| ||| ||||||| | |||||||
Sbjct 405 TGGTTCTGAGATTGACCAAGAACG-TAGGGATGGGGCTTATAATTTGATGATGTTGTCGA 463
Query 473 GTGATTCTCGTAGTTTCAAGAAAAGACGTGACTTGGTGATGAACTCTCTGGGTGAGTCAT 532
|||||||| |||||||||||||||||||| || |||||||||| ||||| ||||||||||
Sbjct 464 GTGATTCTAGTAGTTTCAAGAAAAGACGTAACATGGTGATGAATTCTCTTGGTGAGTCAT 523
Query 533 CTGACAACGACTCTTCGGTTGTGGAGACTAAGTCATCTTCAGGAGATGAGCTAAAGATCT 592
|||||||| ||||| || |||| |||| ||||||||||||||| |||||| | ||||||
Sbjct 524 CTGACAACAACTCTGCGATTGTTGAGAATAAGTCATCTTCAGGGGATGAGTTTAAGATC- 582
Query 593 TTAATGTGAAGAATCAGGTTTTAGAGACAGGGAAAGTTGGAGTAGATGACCATTTGAGAT 652
| | |||| | | || | | || || |||||||||||| | |||||
Sbjct 583 ---A--T---GAAT---G---T---GA-A--G-AA--TGCAGTAGATGACCAATGGAGAT 619
Query 653 CtgatgatgatgatgatgGTGTTAGTCTTTGTGATTCAGATGACTCTGATTCTGATTACT 712
| || |||||||||||| |||||||| ||||||||||||| |||||||||||||||||
Sbjct 620 C---TGCTGATGATGATGGAGTTAGTCTCTGTGATTCAGATGGCTCTGATTCTGATTACT 676
Query 713 TCATAAATGGCCCAAGTAAGTCAGATTCAGACATTTCTGTTGACAAGAACACTGGATTTG 772
|||| ||||| ||||||||||| || ||||||||||||||||||| ||||||||||||||
Sbjct 677 TCATGAATGGTCCAAGTAAGTCGGAGTCAGACATTTCTGTTGACAGGAACACTGGATTTG 736
Query 773 GATCTGGATTCAACAACTCATTGAACAGGTTCAGGAATAGTAATGAGGGAGGATCAAAGT 832
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 737 GATCTGGATTCAACAACTCATTGATCAGGTTCAGGAATAGTAATGAGGGAGGAACAAAGT 796
Query 833 ATGAGCTGAGCAAAAGCAAGAGAGCCTTGTTTTCTTATGAAACTGAATCATGTGCAGACA 892
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 797 ATGAGCTGAGCAAAAGCAAGAGAGCCTTGTTTTCTTATGAAACTGATTCATGTGCAGACA 856
Query 893 CAAACAGCAAGATTCATCATAGGTTCAGAGATAGCAAATCCTCAGTGGTTAAGAAAGAAA 952
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 857 CAAACAGCAAGATTCATCATAGGTTCAAAGATAGCAAATCCTCAATGGTTAAGAAAGAAG 916
Query 953 GTGATGAGAAGAAGACA-AGCAAAGGTCATGAGTGTCCAATTTGCTTCAAGATGTTCAAA 1011
||| ||||||| || | ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 917 GTGGTGAGAAGGTGA-AGAGCAAAGGTCATGAGTGCCCAATTTGCTTCAGGATGTTCAAA 975
Query 1012 TCAGGCCAAGCTTTAGGTGGTCACAAGAGATCACATTCCATTGCAAACCAAGTAGCTGAT 1071
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 976 TCAGGCCAAGCTTTAGGTGGTCACAAGAGATCACATTCCATTGCAAACCACGCAGCTGAA 1035
Query 1072 ACGCGTAACCAAATCGATCTCAATCTTACTGATTCAGATACTGATGAATGA 1122
| ||||||||||||||||||| ||||| ||| ||| |||||||||||||||
Sbjct 1036 ATGCGTAACCAAATCGATCTCTATCTTCCTGTTTCGGATACTGATGAATGA 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5