BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472751
Length=2471
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26580.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1953 0.0
> AT1G26580.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1);
Has 161 Blast hits to 161 proteins in 17 species:
Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants
- 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:9184606-9187505 FORWARD LENGTH=2788
Length=2788
Score = 1953 bits (1057), Expect = 0.0
Identities = 1232/1316 (94%), Gaps = 14/1316 (1%)
Strand=Plus/Plus
Query 740 GAGTTTATTGCATTTGATTACCCATTATGCAGGTTGAAAATGGGATTCAAACGCCCTTTT 799
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 976 GAGTTTATTGCATTTGATTACCAATTATGCAAGTTGAAAATGGGATTCAAACGCCCTTTT 1035
Query 800 GAAGATGAGAAATTTCATGAGCTCCCACTCAAACATTCTAGACAACTTGGCTATACCGAT 859
||||||||||| |||||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct 1036 GAAGATGAGAAGTTTCATGAGCTCCCACTCAAACATTCCAGACAACTTGACTATAACGAT 1095
Query 860 AAGTCGACTCAGTTTGAAGAAGTTAGTCCTCACCATGCTGCTTTCCAGAAAACTGTTGCC 919
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1096 AAGTCTACTCAGTTTGAAGAAGTTAGTCCTCACCATGCTGGTTTCCAGAAAACTGTTGCC 1155
Query 920 ACGGTGAATGAGGGAAATCTTTGTAAGTCACAAGGCGGTGAATCATCTGATGGTGATATG 979
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1156 ACGGTGAATGAGGGAAATCTTTGTAAGTCACAAGGCGGTGAGTCATCTGAAGGTGATATG 1215
Query 980 TTTGACGAAGAGTCCAATTTTGTTTACCC-GGTTCATGACATGGATGATACTTTTACATG 1038
||||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||||
Sbjct 1216 TTTGATGAAGAGTCCAATTATGTTTACCCTGG-TCATGACATGGATGATACTTTTACATG 1274
Query 1039 GGATACAAAAGGTTGTGGTGGAAGAGATGCAACTAACTCTCCCCATTCTGGAAAGTATTT 1098
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1275 GGATACACAAGGTTGTGGTGGAAGAGATGCAACTTACTCTCCCCATTCTGGAAAGTATTT 1334
Query 1099 TGAGCTAGATATACCCCCAAGAGTGTTTGCTCCTGTTGAGACTTTCTATTCTTTCCTCCT 1158
||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| ||| |
Sbjct 1335 TGAGCTAGATATACCTCCAAGAGTATTTGCTCCTGTTGAGACTTTCTATTATTTACTCTT 1394
Query 1159 GGATCAACCTGCCAGAAAGCAAGTGCCCATTGGACCAGGTTATCAAGCCGAAATTCCTGA 1218
|||||||| ||||| ||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1395 GGATCAACGTGCCAAAAAGCAAGTGCCCATTGGACCAGGTCATCAAGCCGAGATTCCTGA 1454
Query 1219 ATGGGAAGGCAGTCAGACTGGGAGCACAGAACCCTCAGGCACGTTGGTTCAAAATCACAT 1278
||||||||||||||||||||||| || |||| ||||||||| || ||||||||||||||
Sbjct 1455 ATGGGAAGGCAGTCAGACTGGGAACATAGAAACCTCAGGCATGTCAGTTCAAAATCACAT 1514
Query 1279 TAGTGGATGTGCTGATGGTGAGAAGCTGTTTGGTACATCTGTTATTCCCATGCCTGGTTT 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 TAGTGGATGTGCTGATGGTGAGAAGCTGTTTGGTACATCTGTTATTCCCATGCCTGGTTT 1574
Query 1339 GACTACATTTGTACATATGGATGACATAGTAGGGAAGGGTAGAAAGTTCTGTGTCTGCCG 1398
||||||| ||| |||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1575 GACTACAGTTGCACATATTGATGACATAGTAGGGAAGGGTAGAAAGTTTTGTGTATGCCG 1634
Query 1399 GGACATGGG-TTCTGTCAGGTGTGTGTGCCAGCACATCAAAGAAGCTAGAGAAGAATTAG 1457
||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1635 GGACA-GGGATTCTGTCAGGTGTGTGTGCCAGCACATTAAAGAAGCTAGAGAAGAATTAG 1693
Query 1458 TTAAGACGTTTGGAAATGAGACATTCAAAGTCCTGGGCTTATGTGATATGGGGGAAGAAA 1517
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||
Sbjct 1694 TTAAGACGTTTGGAAATGAGACATTCAAAGAACTGGGTTTATGTGAGATGGGGGAA-AAA 1752
Query 1518 -TTGCAAGGAACTGGAGCGATGAAGATGCACAACTTTTTAATGAGGTTGTTTATTCCAAT 1576
|||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1753 GGTGCACTGAAGTGGAGCGATGAAGATGCACAACTTTTTCATGAGGTTGTTTATTCCAAT 1812
Query 1577 CCTGTAACATCGGGTCAGAACTTTTGGAAGCACTTGGAAGCTGCATTTTGTTCCCGAACT 1636
|||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1813 CCTGTAACATTGGGGCAGAATTTTTGGAGGCACTTGGAAGCTGCATTTTGTTCCCGAACT 1872
Query 1637 CAGAAAGAGATTGTTAGCTTCTACTTTAACGTTTTTGTCCTCGGAAGGAGAGCCATCCAA 1696
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1873 CAGAAAGAGATTGTTAGCTTCTACTTTAACGTATTTGTCCTCAGAAGGAGAGCCATCCAG 1932
Query 1697 AACAGAGCTTTTATATTGGACATTGACAGTGATGATGATGAATGGCATGGATGTTATGGA 1756
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1933 AACAGAGCTTTTATATTGGACATTGATAGTGATGATGATGAATGGCATGGATGTTATGGA 1992
Query 1757 GGCTCTTCGGGTACTCGTTATGTTGAAGAAGATGAAGAAGACTCTGCTATCGAGTCTCCT 1816
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1993 GGCTCTTCTGGTACTCGTTATGTAGAAGAAGATGAAGAAGACTCTGCAATCGAGTCTCCT 2052
Query 1817 CTTCATCAAGGGACTGAGAAAGTGTATCCACTCCATCACGAAGA-GGATGAAGAAGATGC 1875
||||||||||||||| |||||||||||||||||||||| ||||| || |||||||||||
Sbjct 2053 CTTCATCAAGGGACTAAGAAAGTGTATCCACTCCATCATGAAGAAGG-TGAAGAAGATGT 2111
Query 1876 CAGTAATAGCGGCAATGATGAAGATGATGCCTATGTTGATAATAGAGAAAGTGGCACTGG 1935
||| ||||| |||||||||||||||||| ||| ||| || |||| ||||||||||
Sbjct 2112 TAGTCATAGCAGCAATGATGAAGATGATG---ATG---ATACTAAAGAAGGTGGCACTGG 2165
Query 1936 ACTGTATGACGAGCACACGATGAATTCAACAGTTGAATATATGGATAGATTTTCTGGGAA 1995
||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 2166 ACTGTATGACGAGCACAAGATGAGTTCAACAGTTGAATACATGGATAGATTTTCTGGGAA 2225
Query 1996 CAATGGGGAGAGATTGAACTTGGAAGATGACTCGTGCACGTCCTTTGAACTTGCAC 2051
|||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 2226 CAATGGAGAGAGATTGAACGTGGAAGATGACTCGTGCACTTCCTTTGAACTTGCAC 2281
Score = 671 bits (363), Expect = 0.0
Identities = 636/758 (84%), Gaps = 57/758 (8%)
Strand=Plus/Plus
Query 1 TTTTTCGATATTATCTTCTCTCGTCTTCGTCCCCAAAACTTTCATCGTAAATCCATA-tt 59
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||
Sbjct 36 TTTTTCGATATTATCTTCTCTCGTCTTCTTCCCCAAAAGTTTCATCGTAAATCCAAATTT 95
Query 60 ttctatctttttc-tt--ttttactggga-tttttctAAATTAATCTTGCAATTGATTTG 115
|||| |||||||| || ||||| ||||| ||||||||||||| |||||| | | |||
Sbjct 96 TTCTGTCTTTTTCTTTAATTTTATTGGGATTTTTTCTAAATTATTCTTGC---T-A-TTG 150
Query 116 TAGATTCATCAAATTCTCGTT-CCC-C--TC---T-AT-CT-A-TTGATATCAATT-T-- 161
| | ||||| |||||||||| ||| | || | || || | || || || ||| |
Sbjct 151 -ATA-TCATCTAATTCTCGTTCCCCTCTATCTATTGATACTAATTTTATTTCGATTGTCA 208
Query 162 -----------TTCTAGGGTTAGGGTTGTTGATCTCCTCTCTAGTTGTTTAATATCTTGA 210
|||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 209 AAAAAAAAAAAATCTAGGGTTAGGGTACTTGATCTCTTCTCTAGTTGTTTAATATCTTGA 268
Query 211 TCCATCGTTTCCTTTCGCTATTTACATCGATTTTCTTAAATATTCCTTTTAATTTTGATG 270
|| ||||||| ||||| ||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 269 TCTATCGTTTTCTTTCACTATTTACATCAATTTTGATAAATATTCCTTTCGATTTTGATG 328
Query 271 TCAATTTCATGTTTTTCGTCCCCGATTGAAATCTAGGGTTCATATTTATCGATCTATCTT 330
|||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||
Sbjct 329 TCAATTTCATGTTTTTCGCCCCCGATTGAGATCTAGGGTTCATATTAATCGATCTAGCTT 388
Query 331 AGGGCTTTCCAGATCTATAAATTATCAAAGGGCTTTCTCTTGA-TTTGTATAGATTTGAT 389
|||||||||||||||| |||||| | | |||| |||||| ||| ||||||||| ||||||
Sbjct 389 AGGGCTTTCCAGATCTGTAAATTGTTAGAGGGTTTTCTC-TGAGTTTGTATAGGTTTGAT 447
Query 390 CAATTCTTATCCAATTCATACTTGATTTGGTTGATTTTTGGGTAGGCTCGAATCTAGGGT 449
|||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||
Sbjct 448 CAATTCTTATCCAATTCATACTTGATTTGGTTAATTTTTGGGTAGT-TGGAGTCTAGGGT 506
Query 450 TAGGGTTTCTTCTGATTTGGGGATTTTCGtttttttttttCCAACTTAAGCTTCTAAAGG 509
||||||||||||||||||||||||||| || ||||| ||| ||||||||| |||| |
Sbjct 507 TAGGGTTTCTTCTGATTTGGGGATTTT--TTATTTTT---CCAGCTTAAGCTTTTAAAAG 561
Query 510 C-TGAAAATTCCTATTGAACGTCCCTAGTTTAAGTCT-TCTGGTGGCGTTCTAGTTTGGT 567
| ||||| ||||||||| |||||| ||| ||||| | ||||||||||||||| ||||
Sbjct 562 CCTGAAA-TTCCTATTGGTTATCCCTATTTTTAGTCTAT-TGGTGGCGTTCTAGTATGGT 619
Query 568 TCTATCCCTTGTGAAGTTGGCCTGAAACGTTATCCGAGCTTACTTGTTTAGAGAGGTAAG 627
|||||| || |||||||||||| |||| ||||| |||||||||| ||||||||||| ||
Sbjct 620 TCTATCTTTT-TGAAGTTGGCCTAAAACTTTATCTGAGCTTACTTCTTTAGAGAGGTGAG 678
Query 628 TAATATGC-A--TGGTAACTGGACATTTGTTCTTGTCTGAACTGGTTTATAAGCATTAGT 684
|||||| | | || ||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 679 TAATATACTACATGTTAACTGGACATTTGTTCCTGTCTGAACTGTTTTTTAAGCATTAGT 738
Query 685 AGTTTCTATGTTGTGGTGCATGTTTGTTATACTATCAT 722
| | | |||||||||| |||| ||||| |||| |||
Sbjct 739 --TCT-T-TGTTGTGGTGGATGTGTGTTAAACTAGCAT 772
Score = 503 bits (272), Expect = 4e-141
Identities = 374/419 (89%), Gaps = 23/419 (5%)
Strand=Plus/Plus
Query 2067 GAAGAAGTGTAATGATCCAATGGACGGACACTAAAGTCTGGGCTGCTTTGAGGTGTTCGA 2126
|||| | |||||||||||||| | || || |||||||||| ||||| |||||||| ||
Sbjct 2343 GAAGGATTGTAATGATCCAAT--A--GATACCAAAGTCTGGGATGCTTCGAGGTGTTTGA 2398
Query 2127 ATGTTTCAACAAATGGCAAAGATCTTCAACCAACGCGGAGAATCATGGAGGAAAATATTT 2186
||||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 2399 ATGTTCCAACAAATGGCAAAGATCTTCAACCAACCCGGAGAATCATGGAGG-AGATATTT 2457
Query 2187 GGTAATGGAT-CATGGGAAAACAAGGCAAGAAACAAGTGAAGAAGAAGCAAACATCATTC 2245
|||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2458 GGTAATGGATGC-TGGGAAAACAAGGCAAGAAACAAGT---GAAGAAGCAAACATCATTC 2513
Query 2246 TCAACAACTTGCAGAATCCTGGGAGAGATATTTGGGGTTTATGGGGTCCTCCTACAAAAA 2305
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 2514 TCAACAACTTGCAGAATCATGGGAGAGATATTTGGGGTTTATGGGGTCCTCCTTCAAAAA 2573
Query 2306 TGTTCCTATTAAAA-GTAGAGAGACTTTTAGACTTAA--GAATTTTCCAGCCTTTGTTTC 2362
|||||||||||||| |||| |||| |||||||||||| ||||||||||||||||||||
Sbjct 2574 TGTTCCTATTAAAAAGTAGTGAGAGTTTTAGACTTAAAAGAATTTTCCAGCCTTTGTTTT 2633
Query 2363 TCATGTG-A--------A-TGGGCTGTTGTTTCTCTTTTCTTGGGGCCCTCTTTCTCAAA 2412
||||||| | | |||||||||||||| |||||||||||||||||||||| |||
Sbjct 2634 TCATGTGGATTCTTGTGAATGGGCTGTTGTTTCACTTTTCTTGGGGCCCTCTTTCTTAAA 2693
Query 2413 ATCCTTTGCTTAGAATGTCAGAATCTCTCTGATTTGCAGTAAAAGATTTTCTCTCCTTT 2471
||| ||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||
Sbjct 2694 ATCATTTACTTAGAATGTCATAATCTCTCTGATTTGCTGTAAAAGATTTTCTCTTCTTT 2752
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122608008692
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5