BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472753
Length=1636
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26560.1 | Symbols: BGLU40 | beta glucosidase 40 | chr1:9178... 2447 0.0
> AT1G26560.1 | Symbols: BGLU40 | beta glucosidase 40 | chr1:9178378-9181835
FORWARD LENGTH=1777
Length=1777
Score = 2447 bits (1325), Expect = 0.0
Identities = 1479/1554 (95%), Gaps = 7/1554 (0%)
Strand=Plus/Plus
Query 87 ACATTGAAGGAAGAGATATGACTCCGAGAAGATTTATCatgatgatgataaagatggtga 146
||||||||||||||| ||| ||| || ||||| ||||||| ||||| ||||||| |||
Sbjct 121 ACATTGAAGGAAGAG--ATGGCTCATAGGAGATTAATCATGACGATGACAAAGATGATGA 178
Query 147 tgatggt-a--atgatgatgatgatggatAAGACATGCATATGTGCGGACATTTCCAGAG 203
||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 179 TGATGGTGACCATGATGATGATGATGGATAAAACATGCATATGTGCGGACATTTCCAGAG 238
Query 204 GCAGTTTTCCAAAGGGCTTTGTCTTTGGAACTGCTTCTTCGGCTTTTCAGCACGAAGGAG 263
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 239 GCAGTTTTCCAAAGGGCTTTGTCTTTGGAACTGCTTCTTCGGCTTTTCAGCATGAAGGAG 298
Query 264 CAGTGAAGGCAGAGGGCAGAGGTCCTACGATATGGGACACATTTTCCCACACTTTTGGTA 323
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGGTGAAGGCAGAAGGCAGAGGTCCTACGATATGGGACACATTTTCCCACACTTTTGGTA 358
Query 324 AAATCACCGATTTTAGCAATGCTGATGTCGCTGTTGATCAGTACCATCGTTACGAGGAAG 383
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 AAATCACCGATTTTAGCAATGCTGATGTCGCTGTTGATCAGTATCATCGTTACGAGGAAG 418
Query 384 ATGTACAACTTATGAAAAACATGGGAATGGACGCTTACAGATTTTCTATTTCTTGGACCC 443
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 419 ATGTACAACTTATGAAGAATATGGGAATGGACGCTTACAGATTTTCCATTTCTTGGACCC 478
Query 444 GCATCTTTCCAAATGGTGTTGGACAGATAAACGAAGCCGGAATCGATCACTACAACAAAC 503
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 479 GCATCTTTCCAAATGGTGTTGGACATATAAATGAAGCCGGAATCGATCACTACAACAAAC 538
Query 504 TCATAAATGCTTTACTTGCTAAAGGGATCGAGCCGTACGTGACACTGTACCATTGGGACC 563
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 539 TCATAAATGCTTTACTTGCTAAAGGGATCGAGCCGTACGTGACACTGTACCACTGGGATC 598
Query 564 TTCCTCAGGCACTTCATGATCGATACCTCGGTTGGCTAAACCCACAAATCATCAATGATT 623
|||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 TTCCACAAGCACTTCATGATCGATACCTCGGTTGGCTAAACCCACAAATCATAAATGATT 658
Query 624 TTGCAGCGTATGCGGAGGTGTGTTTCCAGAGATTTGGAGATAGAGTGAAGCATTGGATTA 683
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
Sbjct 659 TTGCAGCGTATGCGGAGGTTTGTTTCCAGAGATTTGGAGATAGAGTGAAGCACTGGATCA 718
Query 684 CATTCAACGAGCCACACACATTCGCGATACAAGGCTATGACGTTGGCCTACAAGCTCCAG 743
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 719 CGTTCAACGAGCCACACACGTTCGCGATACAAGGCTATGATGTTGGCCTACAAGCTCCAG 778
Query 744 GCCGTTGCACTATTCTTTTTAAGCTCACTTGTCGCGCAGGAAACTCATCGACCGAGCCTT 803
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 779 GCCGTTGCACTATTCTTTTTAAGCTCACTTGTCGCGAAGGAAACTCATCGACCGAGCCTT 838
Query 804 ACATTGTCGGTCACAATGTGATTCTAACTCACGCTACCGTATCCGATATCTACAGGAAAA 863
||||||| ||||||||||| ||| |||||||||| || |||||||||||||| |||||||
Sbjct 839 ACATTGTTGGTCACAATGTTATTTTAACTCACGCCACAGTATCCGATATCTATAGGAAAA 898
Query 864 AGT-TCAAGGCAAAGCAAGGAGGTTCGTTAGGGATAGCGTTTGATGTAATGTGGTTTGAA 922
||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 899 AGTAT-AAGGCAAAGCAAGGAGGTTCGTTAGGGATTGCGTTTGATGTAATGTGGTTTGAA 957
Query 923 CCGGAGTCAAATAAGACAGAGGACATTGAAGCTGCACAAAGAGCTCAAGACTTTCAACTT 982
|| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCAGAGTCGAACAAGACAGAGGACATTGAAGCTGCACAAAGAGCTCAAGACTTTCAACTT 1017
Query 983 GGCTGGTTTTTGGATCCGTTGATGTTTGGGGATTATCCGAGCTCGATGAGAAGCAGAGTC 1042
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1018 GGCTGGTTTTTGGATCCGTTGATGTTTGGGGATTACCCAAGCTCGATGAGAAGCAGAGTC 1077
Query 1043 GGAAGCAGATTACCGACGTTTACGGGATCTCAATCTGCTCTTGTGAAGGGTTCTTTAGAT 1102
||||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 1078 GGAAGCAGATTACCGGTGTTTACAGGATCTCAATCTTCTCTGGTGAAGGGTTCTTTAGAT 1137
Query 1103 TTTGTAGGAATTAATCACTACACAACGTACTACGCAAGGAACAATGCCACCAATCTCATT 1162
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTTGTAGGGATTAATCACTACACAACGTACTACGCAAGGAACAATGCCACCAATCTCATT 1197
Query 1163 GGCACCCTTCTACACGACGCCATTTCTGATTCTGGAACCGTCACTCTACCGTTTAAGGGT 1222
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GGCACTCTTCTACACGACGCCGTTTCTGATTCTGGAACCGTCACTCTACCGTTTAAGGGT 1257
Query 1223 TTAAGCACAATTGGAGATAGGGCAAGTTCCATATGGTTGTACATAGTGCCTAGAGGGATG 1282
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1258 TTAAGCACGATTGGAGATAGGGCAAGTTCGATATGGTTGTACATAGTGCCTAGAGGGATG 1317
Query 1283 AGAAGCTTGATGAATTACATCAAACATAGATATGGAAACCCTCCAGTCTTTATCACTGAA 1342
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1318 AGAAGCTTGATGAATTACATTAAACATAGATATGGAAACCCTCCAGTCTTCATCACTGAA 1377
Query 1343 AATGGAATGGACGATCCAAACAGCATTCTGATCTCAAGAAAAGACGCTCTTAAAGATGCA 1402
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1378 AATGGAATGGACGACCCAAACAGCATTCTGATCTCAAGAAAAGACGCTCTCAAAGATGCA 1437
Query 1403 AAGAGAATCAGATACCATCATGATTATCTTTCGAGCTTACAAGCTTCGATAAAAGAGGAT 1462
||||| |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1438 AAGAGGATCAAATACCATCATGATTACCTTTCTAGCTTACAAGCTTCGATAAAAGAGGAT 1497
Query 1463 GGATGTAATGTGAAAGGGTACTTTGTGTGGTCGCTATTGGACAATTGGGAATGGGCAGCA 1522
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1498 GGATGTAATGTCAAAGGGTACTTCGTATGGTCGCTATTGGACAATTGGGAATGGGCAGCA 1557
Query 1523 GGTTATAGTTCAAGGTTTGGTCTCTACTTCGTTGATTATAGAGACAATCTCAAGAGATAT 1582
|||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1558 GGTTATAGTTCAAGATTTGGTCTCTACTTCGTTGATTACAGAGACAACCTCAAGAGATAT 1617
Query 1583 CCTAAGGACTCTGTTCATTGGTTCACTTCTTTCTTGAACTCCACTTCTTGATTT 1636
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1618 CCTAAAGACTCTGTTCATTGGTTCACTTCTTTCTTAAACTCCACTTCTTGATTT 1671
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80822877450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5