BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472757
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26520.1 | Symbols: | Cobalamin biosynthesis CobW-like prot... 2228 0.0
AT1G26530.1 | Symbols: | PIN domain-like family protein | chr1... 390 2e-107
> AT1G26520.1 | Symbols: | Cobalamin biosynthesis CobW-like protein
| chr1:9163246-9165900 REVERSE LENGTH=1633
Length=1633
Score = 2228 bits (1206), Expect = 0.0
Identities = 1323/1378 (96%), Gaps = 13/1378 (1%)
Strand=Plus/Plus
Query 83 TTTGAGTCGTTTGACATTTTAACCAAACCGAACCGAACCGAACCGAGCTAAGT-TGGGCT 141
|||||||||||||||||||||||||||||||||||||||||||| |||||| | || |||
Sbjct 197 TTTGAGTCGTTTGACATTTTAACCAAACCGAACCGAACCGAACCAAGCTAA-TGTGAGCT 255
Query 142 CGGCACATATACGGAGCTTTGTCTCTTACGGCGTCTCTCTCTGCATAAACCGGCGGCGAT 201
|||| |||||| |||||| ||||| |||||||| |||||||||| | | |||||||
Sbjct 256 CGGCCCATATATGGAGCTCTGTCTTTTACGGCG----TCTCTGCATATA-C--CGGCGAT 308
Query 202 GCTGAAGGAAGAAGCTGAGGGAGTGAAAATGGAAGATGATGATGAAGAACCACCGATGGG 261
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GCTGAAGGAAGAAGCTGAGGGAGTGAAAATGGAAGATGATGATGAAGAACCACCGATGGC 368
Query 262 TATTCAAATCCAACCGGATGTTTCTGTCGGAAAGATTCTCTCATCAAGCGACACTGTTTC 321
| |||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||
Sbjct 369 TGTTCAAATCCATCCGGATGTTTCTGTCGGAAAGGTTCACTCATCAAGCGATACTGTTTC 428
Query 322 AGTTGGTGTCTCTGTTATCACTGGCTATCTGGGCGCGGGAAAATCCACCCTTGTGAATTA 381
||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 429 AGTTGGTGTGTCTGTTATCACTGGCTATCTCGGCGCGGGAAAATCCACTCTTGTGAATTA 488
Query 382 TATATTGAACGGGAAACACGGGAAGAGAATAGCTGTGATTTTGAATGAGTTTGGGGAAGA 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TATATTGAACGGGAAACACGGGAAGAGAATAGCTGTGATTTTGAATGAGTTTGGGGAAGA 548
Query 442 GATTGGAGTTGAGAGGGCTATGATTAACGAAGGAGAAGAAGGTGCCATTGTTGAAGAATG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 GATTGGAGTTGAGAGGGCTATGATTAACGAAGGAGAAGAAGGTGCCATTGTTGAAGAATG 608
Query 502 GGTCGAGCTCGCTAATGGCTGTGTTTGTTGTACTGTTAAGCATAGTCTTGTTCAAGCCCT 561
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 609 GGTTGAGCTCGCTAATGGCTGTGTTTGTTGTACTGTCAAGCATAGTCTTGTTCAAGCTCT 668
Query 562 CGAGCAGCTTGTTCAGAGAAAAGACAGGCTTGATCATATATTACTGGAGACAACAGGTTT 621
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 669 CGAGCAGCTTGTTCAGAGAAAAGACAGGCTTGATCATATATTATTGGAGACAACAGGTTT 728
Query 622 AGCGAATCCAGCTCCACTGGCTTCTATTCTTTGGTTGGATGACCAGTTAGAATCAGAAGT 681
||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AGCAAACCCAGCTCCATTGGCTTCTATTCTTTGGTTGGATGACCAGTTAGAATCAGAAGT 788
Query 682 CAAGCTTGACTGTATTGTTACTGTCGTGGATGCAAAGAATCTTCGTTTTCAGCTCAATGA 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 CAAGCTTGACTGTATTGTTACTGTCGTGGATGCAAAGAATCTTCGTTTTCAGCTCAATGA 848
Query 742 GCGCCGTGACTCATCCTCGTTTCCTGAGGCCTTTAATCAAATAGCATTTGCGGACACGAT 801
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GCGTCGTGACTCATCCTCGTTTCCTGAGGCCTTTAATCAAATAGCATTTGCGGACACGAT 908
Query 802 AATAATGAACAAGGTGGACTTGATTTCTCAAGAGGAGTCTGATGAATTAGAGAAGGAGAT 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 AATAATGAACAAGGTGGACTTGATTTCTCAAGAGGAGTCTGATGAATTAGAGAAGGAGAT 968
Query 862 TCATTCCATCAACTCGCTCGCTAATGTCATCCGATCTGTTAGGTGCCAAGTTGATTTGTC 921
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 969 TCATTCCATCAACTCGCTCGCCAATGTCATCCGATCTGTTAGGTGCCAAGTTGATTTGTC 1028
Query 922 CAATATATTAAACTGCCAGGCATATGATTCAACTCATGTTAGTCGTCTGGAATCCCTGCT 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 CAATATATTAAACTGCCAGGCATATGATTCAACTCATGTTAGTCGTCTGGAATCCCTGCT 1088
Query 982 GGAAGCAAATAAATCATTAACGACGACAGATCTTCACGATAGTGGAGTAAGGACTCTATG 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GGAAGCAAATAAATCATTAACGACGACAGATCTTCACGATAGTGGAGTAAGGACTCTATG 1148
Query 1042 CATCAGCGAACCCCAACCTATAAACCTCGATAAGGTTCGTTTATGGCTTGAGGAAATTCT 1101
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1149 CATCAGCGAACCGCAACCTATAAACCTCGATAAGGTTCGTTTATGGCTGGAGGAAATTCT 1208
Query 1102 GTGGGATAAAAAATCGGAGATGGATGTATACCGTTGCAAGGCTGTGTTGAGCATTCAAAA 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 GTGGGATAAAAAATCGGAGATGGATGTATACCGTTGCAAGGCTGTGTTGAGCATTCAAAA 1268
Query 1162 CTCAGACCAGATGCATATTTTGCAGGCTGTTAGAGAGATATATGAGATAGTGCCAGCACG 1221
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1269 CTCAGACCAGATGCATATTTTGCAGGCCGTTAGAGATATATATGAGATAGTGCCAGCTCG 1328
Query 1222 AAAATGGAGCGAGGAAGAGAATCGAACGAACAAAATAGTATTTATAGGACACAAACTGGA 1281
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1329 AAAATGGAGCGAGGAAGAGAATCGAACAAACAAAATAGTATTTATAGGACACAAACTGGA 1388
Query 1282 TGAAGAAGTTCTTAGAAGCGGATTAAGAGATTGCAGACCCTAAACGAAAAAGCAAACTTG 1341
|||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1389 TGAAGAAGTTCTCAGAAGCGGATTAAGAGATTGCAGACCCTAGATGAAAAAGCAAACTTG 1448
Query 1342 CACTGACAACTAGATTGGTCTATTTTGGttttttttttCCCAAGTTTTACCGTCATGAAC 1401
|| |||||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1449 CAGTGACAACTAGATTGGTCT-TTTT--TTTTTTCCC-CCCAAGTTTTACCGTCATGAAC 1504
Query 1402 AATACTCTTATCAATTTTTGTATAATATATAACAACTATGTAAGGTTATTTAGGTGTT 1459
|||||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||
Sbjct 1505 AATACTCTGATCAATTTTTGTATAATATATAACAAGTGTGTAAGGTTATATAGGTGTT 1562
> AT1G26530.1 | Symbols: | PIN domain-like family protein | chr1:9165360-9167490
FORWARD LENGTH=1259
Length=1259
Score = 390 bits (211), Expect = 2e-107
Identities = 264/288 (92%), Gaps = 9/288 (3%)
Strand=Plus/Minus
Query 83 TTTGAGTCGTTTGACATTTTAACCAAACCGAACCGAACCGAACCGAGCTAAGT-TGGGCT 141
|||||||||||||||||||||||||||||||||||||||||||| |||||| | || |||
Sbjct 345 TTTGAGTCGTTTGACATTTTAACCAAACCGAACCGAACCGAACCAAGCTAA-TGTGAGCT 287
Query 142 CGGCACATATACGGAGCTTTGTCTCTTACGGCGTCTCTCTCTGCATAAACCGGCGGCGAT 201
|||| |||||| |||||| ||||| |||||||| |||||||||| | | |||||||
Sbjct 286 CGGCCCATATATGGAGCTCTGTCTTTTACGGCG----TCTCTGCATATA-C--CGGCGAT 234
Query 202 GCTGAAGGAAGAAGCTGAGGGAGTGAAAATGGAAGATGATGATGAAGAACCACCGATGGG 261
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 GCTGAAGGAAGAAGCTGAGGGAGTGAAAATGGAAGATGATGATGAAGAACCACCGATGGC 174
Query 262 TATTCAAATCCAACCGGATGTTTCTGTCGGAAAGATTCTCTCATCAAGCGACACTGTTTC 321
| |||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||
Sbjct 173 TGTTCAAATCCATCCGGATGTTTCTGTCGGAAAGGTTCACTCATCAAGCGATACTGTTTC 114
Query 322 AGTTGGTGTCTCTGTTATCACTGGCTATCTGGGCGCGGGAAAATCCAC 369
||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 113 AGTTGGTGTGTCTGTTATCACTGGCTATCTCGGCGCGGGAAAATCCAC 66
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5