BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472768
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26510.1 | Symbols: | F-box associated ubiquitination effec... 1327 0.0
AT1G26515.1 | Symbols: | F-box and associated interaction doma... 1022 0.0
> AT1G26510.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:9159851-9161044 REVERSE LENGTH=1194
Length=1194
Score = 1327 bits (718), Expect = 0.0
Identities = 931/1030 (90%), Gaps = 30/1030 (3%)
Strand=Plus/Plus
Query 952 ATGAGGACACGCAGCAAAAAGATCAAAACCGTGAACAACAACAA-GAATCTACAAAAGTC 1010
||||||||||| |||||||||| ||||||||||||||||||||| | |||||||||||||
Sbjct 1 ATGAGGACACGTAGCAAAAAGACCAAAACCGTGAACAACAACAACG-ATCTACAAAAGTC 59
Query 1011 GGAAAAG-AAGAACAAGTTTGATCAACTCCCTCTGGACCTAGAGATCGAGATATTTAAGA 1069
|||| || || || |||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 60 GGAAGAGAAACAA-AAGTTTGATCAACTCCCTCTGGACCTAGAGATCGAGATGTTTAGGA 118
Query 1070 GGTTGCCTTTGAAATCTGTAGCTAGGTTTCTCACACTATCCAAGTTATGTGCAACAACTA 1129
|| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 119 GGCTGCCTTTAAAATCTGTAGCTAGGTTTCTCACACTATCCAAGTCATGTGCAACAACTA 178
Query 1130 TCCGCAGTCCAAGTTTCATCACATCTTTCCCATCGCAGCCTTGTACCCTAATCGCTTCCG 1189
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 179 TCCGCAGTCCAAGTTTCATCACATCATTCCCGTCGCAGCCTTGTACCCTAATCGCTTCCG 238
Query 1190 CCCCTATAATCAGGACGTGCCACAACTTGCCTTCCAGCTTTAAATCTAAGGACCAAAGGT 1249
|| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CCGCTACAATCAGGACTTGCCACAACTTGCCTTCCAGCTTTAAATCTAAGGACCAAAGGT 298
Query 1250 TG---------T-A----CTTCTTC-TCATCAAC-GTCTTTTCTATCGCGTTTGACATGT 1293
|| | | ||||||| |||||||| |||||||||| ||||||||||||||
Sbjct 299 TGTACTTCTTCTCATCGTCTTCTTCATCATCAACTGTCTTTTCTA-CGCGTTTGACATGT 357
Query 1294 CCGTCGTCCCCATATCCTAATCTGATAGAGTACTATTATCATTATGCTAATGGTTTGATA 1353
|||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 358 CCGTTGTCCCCATATGATAATCTGATAGAGTACTATTATCATTATGCTAGTGGTTTGATA 417
Query 1354 AGCGTTGGATGTGGTCGAGAGCAAATCGTAACTAACCCTAGCACTGGTAGATCCATAACT 1413
||| |||||||| |||| ||||||||||||||||||| ||||||||||||| |||||||
Sbjct 418 AGCATTGGATGTAATCGAAAGCAAATCGTAACTAACCCCAGCACTGGTAGATTCATAACT 477
Query 1414 TTACCAAGTGTCAGAACAAGGAGAATGGGTA-TAAAAAGTTTTTTCGGATATGATCCAGT 1472
|||||||||||||||| ||| ||| ||| | | |||||||||||||| |||||||||||
Sbjct 478 TTACCAAGTGTCAGAAGAAGAAGAGTGG-TCGTGAAAAGTTTTTTCGGGTATGATCCAGT 536
Query 1473 TAGTGATCAATACAAAGTCTTGTGTATGACGGAAAGACTTCATGGCCTTCGACAAGACCC 1532
|||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct 537 TAGTGATCAATACAAAGTCTCGTGCATGACGGAAAGACGTCATGGCCTTCGACAAGACCC 596
Query 1533 ATCATCTCAACATCAAGTGTTCACACTGGGAGaaaaaaaGCCATGGAAAATGATCGATTC 1592
||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 597 ATCATCTGAACATCAAGTGTTCACATTGGGAGAAAAAAAGCCATGGAAAATGATAGATTG 656
Query 1593 TACTAGCATTCCTAATCACCGTCCTTGGTCTAACGGTATTTGCATAGATGGTCTTGTGTA 1652
||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 657 TACTAGCATTCCTGATCACCGTCCTTGGTCTAACGGTGTGTGCATAGATGGTTTTGTGTA 716
Query 1653 TTATGTTGCTAAAACGGGGCAAGGTATTTCACAACTGAGCTTAATGAGATTTGATTTGAG 1712
||| ||||||||||| || |||||||| |||||||||||||||||||||| || | ||||
Sbjct 717 TTACGTTGCTAAAACTGGACAAGGTATGTCACAACTGAGCTTAATGAGATATGCTCTGAG 776
Query 1713 GGCTGACAATATGAATCTTTTTACTAGTTTACCTGAAGAGATTCGAACTCCAACAA-TAT 1771
|||||||||| ||||||||||||||||||||||||||||| ||||||||| || || |||
Sbjct 777 GGCTGACAATTTGAATCTTTTTACTAGTTTACCTGAAGAGCTTCGAACTCTAA-AACTAT 835
Query 1772 ATAGTGACACTTTATTAAACT-TCGAGGGGAAAGTAGCCATAGCCATTCCAACTACATCA 1830
| ||||||||||||| |||| | || ||||| ||||| || |||| |||| ||||||
Sbjct 836 CTGGTGACACTTTATTGAACTAT-GAAGGGAATGTAGC-ATGGCCACTCCAGTTACATC- 892
Query 1831 TATATATTTGATGTGTGGGTTATGAATCAGGATGGCGCAAAACATGAATGGTTGAAGAAA 1890
| ||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 893 T-TATATTTAATGTGTGGGTTATGGATCAGGATGGCGAAAAACATGAATGGTTGAAGAAA 951
Query 1891 ATAACTTTCAGTATTGAACCATGGAAGAGTTTATTTCGCTATCTATATGTTAGAGGCACT 1950
|||||||||| ||||||||| |||||||||| || |||||||||| | ||||||||||||
Sbjct 952 ATAACTTTCAATATTGAACCTTGGAAGAGTTCATCTCGCTATCTAGACGTTAGAGGCACT 1011
Query 1951 ACTCATACGG 1960
||||||||||
Sbjct 1012 ACTCATACGG 1021
Score = 669 bits (362), Expect = 0.0
Identities = 586/687 (85%), Gaps = 43/687 (6%)
Strand=Plus/Plus
Query 1 ATGAGAACACGTAGCAAAAAGACCAAAACCGTGAACAACAACAA-GAATCTACAAAAGTC 59
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1 ATGAGGACACGTAGCAAAAAGACCAAAACCGTGAACAACAACAACGA-TCTACAAAAGTC 59
Query 60 GGAAGATAAA-AACACGTTTGATCAACTGCCTCTGGACCTATTGATCGAGATATCTAGGA 118
|||||| ||| || | |||||||||||| |||||||||||| ||||||||| | |||||
Sbjct 60 GGAAGAGAAACAAAA-GTTTGATCAACTCCCTCTGGACCTAGAGATCGAGATGTTTAGGA 118
Query 119 GGTTGCCTTTGAAATCTGTAGCTAGGTTTCTCACACTATCCAAGTTATGTGCAACAACTA 178
|| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 119 GGCTGCCTTTAAAATCTGTAGCTAGGTTTCTCACACTATCCAAGTCATGTGCAACAACTA 178
Query 179 TCCGCAGTCCAAGCTTCATCAAATCCTTCCCGTCGCAGCCTTGTACCCTAATCGCTGTC- 237
||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||| ||
Sbjct 179 TCCGCAGTCCAAGTTTCATCACATCATTCCCGTCGCAGCCTTGTACCCTAATCGCT-TCC 237
Query 238 GCCCCTGTAATCA--ATTT-CC-CT-C---CCAGGC-GTTTTAAATCTAGGGGACACCAA 288
||| || ||||| | || || | | || | | |||||||||| || || | ||
Sbjct 238 GCCGCTACAATCAGGACTTGCCACAACTTGCCTTCCAGCTTTAAATCTAAGG-AC-C-AA 294
Query 289 AATTTGTACTTCTTCTCATC---------ATCATC----GTCTTTTCTATCACGTTTGAC 335
| ||||||||||||||||| |||||| |||||||||| | ||||||||
Sbjct 295 AGGTTGTACTTCTTCTCATCGTCTTCTTCATCATCAACTGTCTTTTCTA-CGCGTTTGAC 353
Query 336 ATGTCCGT---CCCCGTATCCTAAT-T-ACGTAGAGTACCATTATCATTATGTTAATGGT 390
|||||||| |||| ||| |||| | | |||||||| |||||||||||| || ||||
Sbjct 354 ATGTCCGTTGTCCCCATATGATAATCTGA--TAGAGTACTATTATCATTATGCTAGTGGT 411
Query 391 TTGATAAGCGTTGGATATGGTCGAGAGCAAATCGTAACTAACCCCAGTACTGGTAGATTC 450
||||||||| |||||| | |||| |||||||||||||||||||||| ||||||||||||
Sbjct 412 TTGATAAGCATTGGATGTAATCGAAAGCAAATCGTAACTAACCCCAGCACTGGTAGATTC 471
Query 451 ATCTCTTTACCAAGTGTCAGAACAAGGAGAAG-GGTCGTAAAAAGTTTTTTCGGGTATGA 509
|| |||||||||||||||||| ||| ||| | |||||| ||||||||||||||||||||
Sbjct 472 ATAACTTTACCAAGTGTCAGAAGAAGAAGA-GTGGTCGTGAAAAGTTTTTTCGGGTATGA 530
Query 510 TCCTGTTACTGATCAATACAAAGTGTTGTCCATGACGGAGAGACTTCATGGCCATA-ACC 568
||| |||| ||||||||||||||| | || ||||||||| |||| |||||||| | ||
Sbjct 531 TCCAGTTAGTGATCAATACAAAGTCTCGTGCATGACGGAAAGACGTCATGGCCTTCGAC- 589
Query 569 AAGATCCATCATCTCAACATCAAGTGTTCACACTGGGAGaaaaaaaGCCATGGAGAATGA 628
|||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 590 AAGACCCATCATCTGAACATCAAGTGTTCACATTGGGAGAAAAAAAGCCATGGAAAATGA 649
Query 629 TAGATAGTACTAGCATTCCTGATCACC 655
||||| |||||||||||||||||||||
Sbjct 650 TAGATTGTACTAGCATTCCTGATCACC 676
> AT1G26515.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:9161810-9162910 REVERSE LENGTH=1101
Length=1101
Score = 1022 bits (553), Expect = 0.0
Identities = 892/1046 (85%), Gaps = 62/1046 (6%)
Strand=Plus/Plus
Query 952 ATGAGGACACGCAGCAAAAAGATCAAAACCGTGAACAACAACAAGAATCTACAAAAGTCG 1011
|||| ||||||||||||||||| |||||||| |||| | | |||| |||||||
Sbjct 1 ATGAAGACACGCAGCAAAAAGACCAAAACCGAGAAC-A-ATCAAG-------AAAAGTC- 50
Query 1012 GAAA-AGAAGAACAAGTTTGATCAACTCCCTCTGGACCTAGAGATCGAGATATTTAAGAG 1070
||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 51 AAAAGAGAAAAACAAGTTTGATCAACTGCCTCTGGACCTAGAGATCGAGATATTTAGGAG 110
Query 1071 GTTGCCTTTGAAATCTGTAGCTAGGTTTCTCACACTATCCAAGTTATGTGCAACAACTAT 1130
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 111 GTTGCCTTTGAAATCTGTAGCTAGGTTTCTCACACTATCCAAGTCATGTGCAGCAACTAT 170
Query 1131 CCGCAGTCCAAGTTTCATCACATCTTTCCCATCGC---AGCCTTGTACCCTAATCGCTTC 1187
||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 171 CCGCAGTCCAAGTTTCATCACATCTTTCCGGTCGCCGCAGCCTTGTACCTTAATCGCTTC 230
Query 1188 CGCCCCTATAATCAGGAC-GTGC--CACAACTTGCCTTCC-AGCTTTAAATC-TAAGGAC 1242
||| |||||| ||| || || | ||| ||| || || | | | || | ||
Sbjct 231 CGCTCCTATATTCA--ACTGT-CTTCACCCCTTTAAA-CCTAGGGT-AC-TGGTA-G-AC 282
Query 1243 CA-AAGGTTGTACTTCTTCTCATCAACGTCTT--T--TC-T-ATCG-CGT-TTGAC-AT- 1291
|| ||| || | ||||||||||||| |||||| | || | ||| ||| || | ||
Sbjct 283 CACAAG-TTATCCTTCTTCTCATCATCGTCTTCCTCATCATCATCAACGTCTTTTCTATC 341
Query 1292 G--T----C----C-GTCGTCCCCATATCCTAATCTGATAGAGTACTATTATCATTATGC 1340
| | | | |||||||||||| ||| || || |||||||||| ||||||||
Sbjct 342 GCGTTTGACATGTCCGTCGTCCCCATACCCTCGTCACATGGAGTACTATTGTCATTATG- 400
Query 1341 TAA-TGGTTTGATAAGCGTTGGATGTGGTCGAGAGCAAATCGTAACTAACCCTAGCACTG 1399
||| ||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 401 TAAATGGATTGATAAGCGTTGGATATGGTCGAGAGCAAATCGTAACCAACCCTAGCACTG 460
Query 1400 GTAGATCCATAACTTTACCAAGTGTCAGAACAAGGAGAATGGGTA-TAAAAAGTTTTTTC 1458
|||||| |||||||||||||||||||||||||| ||||| || | ||||||||||||||
Sbjct 461 GTAGATTCATAACTTTACCAAGTGTCAGAACAAAGAGAA-GGCTCGTAAAAAGTTTTTTC 519
Query 1459 GGATATGATCCAGTTAGTGATCAATACAAAGTCTTGTGTATGACGGAAAGACTTCATGGC 1518
|| |||||||||| |||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 520 GGGTATGATCCAGCTAGTGATCAATACAAAGTGTTGTGCATGACGGAAAGACTTTATGGC 579
Query 1519 CTTCGACAAGACCCATCATCTCAACATCAAGTGTTCACACTGGGAGaaaaaaaGCCATGG 1578
| || | |||||||||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct 580 CATCAAGAAGACCCATCTTCTCAACATCAAGTGTTCACATTGGGAGTAAAAAAGCCATGG 639
Query 1579 AAAATGATCGATT-CTACTAGCATTCCTAATCACCGTCCTTGGTCTAACGGTATTTGCAT 1637
|||||| | ||| | |||| ||||||| |||||||||||||| |||||||| | |||||
Sbjct 640 AAAATGTTAGATCGC-ACTACCATTCCTGATCACCGTCCTTGGACTAACGGTGTGTGCAT 698
Query 1638 AGATGGTCTTGTGTATTATGTTGCTAAAACGGGGCAAGGTATTTCACAACTGAGCTTAAT 1697
||||||| |||| ||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 699 AGATGGTGTTGTCTATTACATTGCTAAAACGGGGCAAGGTATGTCACAACTGAGCTTAAT 758
Query 1698 GAGATTTGATTTGAGGGCTGACAATATGAATCTTTTTACTAGTTTACCTGAAGAGATTCG 1757
||||| ||||||||||| ||||||| ||||| |||||| |||||||||||||||||||||
Sbjct 759 GAGATATGATTTGAGGGATGACAATTTGAATGTTTTTATTAGTTTACCTGAAGAGATTCG 818
Query 1758 AACTCCAACAATATATAGTGACACTTTATTAAACTTCGAGGGGAAAGTAGCCATAGCCAT 1817
|||||||| |||| ||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 819 AACTCCAAGTCTATACAGTGACACTTTATTAAACTACGAGGGGAAACTAGCCATAGCCAT 878
Query 1818 TCCAACTACATCATATATATTTGATGTGTGGGTTATGAATCAGGATGGCGCAAAACATGA 1877
|||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 879 TCCAGTTACATCATATATATTTGATGTGTGGGTTATGGATCAGGATGGCGAAAAACATGA 938
Query 1878 ATGGTTGAAGAAAATAACTTTCAGTATTGAACCATGGAAGAGTTTATTTCG-CTATCTAT 1936
||||||||||||||||||||||| ||||||||| ||| |||||| |||| | | || ||
Sbjct 939 ATGGTTGAAGAAAATAACTTTCAATATTGAACCTTGGCAGAGTTCATTT-GACGAT--AT 995
Query 1937 ATG--TTAGAGGCACTACTCATACGG 1960
| | ||| ||||||||||| |||||
Sbjct 996 ACGCATTAAAGGCACTACTCTTACGG 1021
Score = 601 bits (325), Expect = 1e-170
Identities = 570/681 (84%), Gaps = 46/681 (7%)
Strand=Plus/Plus
Query 7 ACACGTAGCAAAAAGACCAAAACCGTGAACAACAACAAGAATCTACAAAAGTCGGAAGAT 66
||||| ||||||||||||||||||| |||| | | |||| ||||||| ||||
Sbjct 7 ACACGCAGCAAAAAGACCAAAACCGAGAAC-A-ATCAAG-------AAAAGTCAAAAGAG 57
Query 67 AAAAACACGTTTGATCAACTGCCTCTGGACCTATTGATCGAGATATCTAGGAGGTTGCCT 126
||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 58 AAAAACAAGTTTGATCAACTGCCTCTGGACCTAGAGATCGAGATATTTAGGAGGTTGCCT 117
Query 127 TTGAAATCTGTAGCTAGGTTTCTCACACTATCCAAGTTATGTGCAACAACTATCCGCAGT 186
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 118 TTGAAATCTGTAGCTAGGTTTCTCACACTATCCAAGTCATGTGCAGCAACTATCCGCAGT 177
Query 187 CCAAGCTTCATCAAATCCTTCC---CGTCGCAGCCTTGTACCCTAATCGCTGT-CGCCCC 242
||||| ||||||| ||| |||| || |||||||||||||| |||||||| | ||| ||
Sbjct 178 CCAAGTTTCATCACATCTTTCCGGTCGCCGCAGCCTTGTACCTTAATCGCT-TCCGCTCC 236
Query 243 TGTAATCAATTTCCCTCCCAGGCGTTTTAAATCTA-GG----GG-ACACCA-AA---A-- 290
| || |||| | || || | |||||| ||| || || | |||| || |
Sbjct 237 TATATTCAA-CTGTCT-TCA-CCCCTTTAAACCTAGGGTACTGGTAGACCACAAGTTATC 293
Query 291 --T-TTGT-A-C-T--TCTT-CTCATCATCAT---CGTCTTTTCTATCACGTTTGACATG 338
| || | | | | |||| ||||||||||| ||||||||||||| |||||||||||
Sbjct 294 CTTCTTCTCATCATCGTCTTCCTCATCATCATCAACGTCTTTTCTATCGCGTTTGACATG 353
Query 339 T-C--CGTCCCCGTATCCTAATTACGTAGAGTACCATTATCATTATGTTAATGGTTTGAT 395
| | ||||||| || ||| | || | |||||| ||| ||||||||| ||||| |||||
Sbjct 354 TCCGTCGTCCCCATACCCTCGTCACATGGAGTACTATTGTCATTATGTAAATGGATTGAT 413
Query 396 AAGCGTTGGATATGGTCGAGAGCAAATCGTAACTAACCCCAGTACTGGTAGATTCATCTC 455
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |
Sbjct 414 AAGCGTTGGATATGGTCGAGAGCAAATCGTAACCAACCCTAGCACTGGTAGATTCATAAC 473
Query 456 TTTACCAAGTGTCAGAACAAGGAGAAGGGTCGTAAAAAGTTTTTTCGGGTATGATCCTGT 515
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
Sbjct 474 TTTACCAAGTGTCAGAACAAAGAGAAGGCTCGTAAAAAGTTTTTTCGGGTATGATCCAGC 533
Query 516 TACTGATCAATACAAAGTGTTGTCCATGACGGAGAGACTTCATGGCCAT-AACCAAGATC 574
|| |||||||||||||||||||| ||||||||| |||||| |||||||| || |||| |
Sbjct 534 TAGTGATCAATACAAAGTGTTGTGCATGACGGAAAGACTTTATGGCCATCAAG-AAGACC 592
Query 575 CATCATCTCAACATCAAGTGTTCACACTGGGAGaaaaaaaGCCATGGAGAATGATAGATA 634
|||| ||||||||||||||||||||| |||||| |||||||||||||| |||| |||||
Sbjct 593 CATCTTCTCAACATCAAGTGTTCACATTGGGAGTAAAAAAGCCATGGAAAATGTTAGATC 652
Query 635 GTACTAGCATTCCTGATCACC 655
| |||| ||||||||||||||
Sbjct 653 GCACTACCATTCCTGATCACC 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98995474740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5