BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472771
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26470.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 922 0.0
> AT1G26470.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: regulation of transcription; LOCATED IN:
nucleus, H4/H2A histone acetyltransferase complex; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: CT20 (InterPro:IPR012423); Has
60 Blast hits to 60 proteins in 27 species: Archae - 0; Bacteria
- 0; Metazoa - 26; Fungi - 2; Plants - 30; Viruses -
0; Other Eukaryotes - 2 (source: NCBI BLink). | chr1:9155091-9156246
FORWARD LENGTH=655
Length=655
Score = 922 bits (499), Expect = 0.0
Identities = 582/620 (94%), Gaps = 13/620 (2%)
Strand=Plus/Plus
Query 1 CAAAACCCTAAAAAATGGGTGGAAGAACGGACGGAAGTGGCGGAGGAGGTAAAGAGAAAG 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 30 CAAAACCCTAAAAAATGGGTGGAAGAACGGACGAAAGTGGCGGAGGAGGTAAAGAGAAAG 89
Query 61 AGGAAGAGCAAGACGGTTTGTCCGTGCACTCTCCCTGTAAAGCTTTACCTTCCTCCGCTT 120
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 90 AGGAAGAGCAAGATGGTTTGTCCGTACACTCTCCCTGTAAAGCTTTACCTTCCTCCGCCT 149
Query 121 CATCTCTCTCCAAGGAGCAGTCACAGGTTGAATTAGAGCTCAGGTTATTAGAAGCTCTTG 180
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 150 CCTCTCTCTCCAAGGAGCAGTCACAGGTTGAATTAGAGCTAAGGTTATTAGAAGCCCTTG 209
Query 181 AAATCTATCCTCCTGTCAAACTCCGAGGGATACATCGCCACTTTGTTCTTTATGGTCTCA 240
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 210 AAATCTATCCTCCTGTTAAACTCCGAGGGATACATCGCCACTTTGTTCTTTATGGTCTGA 269
Query 241 TGGAGTATCTCGGAAGAAGCTTTGACCGACCGTTCTCAGCAGATGAGGTTCTGCAACTAC 300
||||||||||||||||||||||||||||||||||| | || |||||||||||||| ||||
Sbjct 270 TGGAGTATCTCGGAAGAAGCTTTGACCGACCGTTCACTGCGGATGAGGTTCTGCAGCTAC 329
Query 301 TCGATCGTTTCTACAACATCGAGATGCTGAAATCAGATGATGAGGACATAGACATTCTGA 360
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 330 TCGATCGTTTTTACAACATTGAGATGCTGAAATCAGATGATGAGGACATAGACATTCTGA 389
Query 361 ATCACGAGGAAGACTTTACCTTGCCGCCGAGTTAT-TTTGATAAGGAAGAAGAATGACAG 419
||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 390 ATCACGAGGAAGACTTTACCTTGCCGCAGAGTT-TCTTTGATAAGGAAGAAGAATGACAG 448
Query 420 AGCAAGAAGAAAAGATCTTTTCTTTGCTTCATTCATCTTCTCCCATCTTTTTGTATATGG 479
|| ||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 449 AGGAAGAAGAAAAGATGTTTTCTTT--T-CATTCATCTTCTCCCATCTTTTTGTATATGG 505
Query 480 TTAGGTTT-GTCTTCAGCTCTTATGATAAGtttttttCTGTATATTCTGCAGTTTTAATG 538
|||||||| ||||||||||||||||||||| |||||||| ||||||||| ||||||||||
Sbjct 506 TTAGGTTTTGTCTTCAGCTCTTATGATAAGCTTTTTTCTATATATTCTGAAGTTTTAATG 565
Query 539 TCAATAAAACCATCAGGATCATTGG-T---Cttttt-ttACTCTG-CCGGGAGAGTTAAT 592
||||||||||||||||||||| || | |||||| |||||||| || | |||||||||
Sbjct 566 TCAATAAAACCATCAGGATCAATGAATAATCTTTTTGTTACTCTGTCCAG-AGAGTTAAT 624
Query 593 AATCATAACAAGCTTGTTGC 612
||||||||||||||| ||||
Sbjct 625 AATCATAACAAGCTTTTTGC 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5