BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472772
Length=1976
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26460.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3221 0.0
> AT1G26460.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:9151732-9154740 FORWARD LENGTH=2310
Length=2310
Score = 3221 bits (1744), Expect = 0.0
Identities = 1894/1968 (96%), Gaps = 4/1968 (0%)
Strand=Plus/Plus
Query 1 AGAACTCAGAAAACCCTAAACACAGATAAACCCCAAAACTCAAAAAACAGATCTTTCCAA 60
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 23 AGAACTCAGAAAACCCTAAACACAGATAAACCCCAAAACTCAAAAACCAAATCTTTCCAA 82
Query 61 CAATGGCGTCTCATCTCTTTACCCGATCCCGAATCTCTCTCCTCAAAACCCTAAAACCCA 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 83 CAATGGCGTCTCATCTCTTTACCCGATCTCGAATCTCTCTCCTCAAAACCCTAAAACCCA 142
Query 121 ATCCTTTTACCTCTA-CTTCACCCATCAGAGCCATTTCCGGTACACCATTCCTCTCTCAA 179
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 ATCCTTTTACCTC-AGCTTCACCCATCAGAGCCATTTCCGGTACACCATTCCTCTCTCAA 201
Query 180 GACCCCCAGCTCGCAACTGAATCAACAGATCACGACCCATCAAATCATCAATCAACCTCC 239
|| || | ||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 202 GATCCTCTGCTCGCAACCGAATCAACAGATCACGACCCATCAAACCATCAATCAACCTCC 261
Query 240 ACGCCGCTTCCACCGAATCCAGCCACCGGAAGTCCTCTATACCAAGAGAATTGGCGTAGT 299
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 262 ACGCCGCTTCCACCGAATCCAGCAACAGGAAGTCCTCTTTACCAAGAGAATTGGCGTAGT 321
Query 300 CCGATCCCAAACACTCCTTCCTTCAACCAATCTCTTGTTCCTTTAGGATTTCTAAATCAA 359
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 322 CCGATCCCAAACACTCCTTCCTTCAACCAATCTCTAGTTCCATTAGGATTTCTAAATCAA 381
Query 360 GCTCCTGCAGCTCGTATCAGAGCACTCTCTGAGACGCTTGACATGAACTCTCTGCTTAAC 419
|||||||| ||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 382 GCTCCTGCTCCTCGTATCAGAGCTCTCTCTGAGACGCTTGACATGAACTCGCTGCTGAAT 441
Query 420 ATGTTTGCTGATTGGACTGCGTCGCAGCGTTGGTCTGACATGAAGCAGCTTTTTGAGGTC 479
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 442 ATGTTTGCGGATTGGACTGCTTCGCAGCGTTGGTCTGACATGAAGCAGCTTTTTGAGGTT 501
Query 480 TGGGTTCGATCGCTTGACAAGAATGGGAAGCCGAATAAGCCTGATGTGAACCTCTACAAT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 502 TGGGTTCGATCGCTTGACAAGAATGGGAAGCCGAATAAGCCTGATGTGAACCTTTACAAT 561
Query 540 CATTACCTTCGAGCTAATTTGATGATGGGTGCTTCGGCTGGAGACATGCTTGATCTTGTT 599
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 562 CATTACCTTCGAGCTAACTTGATGATGGGTGCTTCTGCTGGAGATATGCTTGATCTTGTT 621
Query 600 GCGCCAATGGAAGAGTTTTCTGTGGCACCTAATACAGCGTCTTATAATCTAGTTTTGAAG 659
||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 622 GCGCCAATGGAGGAGTTTTCTGTTGAACCTAATACAGCGTCTTATAATCTAGTTTTGAAG 681
Query 660 GCTATGTACCAGGCAAGAGAGACTGATGCTGCCATGAAGCTGCTTGAACGGATGCTCCTG 719
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 682 GCTATGTACCAGGCAAGAGAGACTGAAGCCGCCATGAAGCTGCTTGAACGGATGCTCCTC 741
Query 720 TTGGGCAAGGAATCTCTTCCGGATGATGAATCATATGATTTGGTTATTGGAATGCATTTT 779
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 TTGGGGAAGGACTCTCTTCCGGATGATGAATCATATGATTTGGTTATTGGAATGCATTTT 801
Query 780 GGAGTTGGGAAGAATGACGAAGCCATGAAAGTTATGGATATGGCACTGAAATCTGGTTAT 839
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 802 GGAGTTGGGAAGAATGACGAAGCCATGAAAGTTATGGACACGGCACTGAAATCTGGTTAT 861
Query 840 ATGTTATCCACCTCAGTATTTACTGAATGTGTTCGTAGTTGTGTAGCCAAAGGTAGGACA 899
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 ATGTTATCCACCAGTGTCTTTACTGAATGTGTTCGTAGTTGTGTAGCCAAAGGTAGGACA 921
Query 900 GATACACTGGTCTCCATCATCGAGAGGTGTAAGGCTGTTGATCGGAACAAGTCCCTTTGC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 922 GATACACTGGTCTCCATCATCGAGAGGTGTAAGGCTGTTGATCGGAACAAGTCTCTTTGC 981
Query 960 CCTAGCTGGATACTGTGTAATTATATTGCTGAAGTTGCAATTCAAGAGGATAATAGCAAA 1019
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 982 CCTAGCTGGATACTGTGTAACTATATTGCAGAAGTTGCAATTCAAGAGGATAATAGCAAG 1041
Query 1020 TTAGCATTTTATGCGTTTGAATTTATGTTCAAGTGGATCACTAGAGGCGAAATGGCTAGG 1079
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 TTGGCCTTTTATGCGTTTGAATTTATGTTCAAGTGGATCACTAGAGGCGAAATGGCTAGG 1101
Query 1080 CCCTCGGTTATTCTTTCTGTTGATGAAGGGTTGGTAGTAGCAGGCCTTGCAACTGCTGCT 1139
|| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1102 CCGTCGGTTATTTTTTCTGTTGATGAAGGGTTGGTAGTAGCAGGCCTTGCAAGTGCTGCT 1161
Query 1140 AGGACTTGTAGTTCATCTTTAGTGGAAGGATCATGGACGATTCTGAAACAGAGTCTGCGT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 AGGACTTGTAGTTCATCTTTAGTGGAAGGATCATGGACGATTCTGAAACAGAGTCTGCGT 1221
Query 1200 GGGAGGAAGGCAGCCAACCCTGCATCTTACATTGCAAAGATTAATGCCTATGCATCATTG 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1222 GGGAGGAAGGCAGCCAACCCTGCATCTTACATTGCAAAGATTAATGCCTATGCATCGTTG 1281
Query 1260 GGGAATCTGCAAAAAGCTTTCACCTCACTTCATGAACTTGAATCCGCATATGCAGACTCT 1319
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1282 GGGAATCTGCAAAAAGCTTTCACTTCACTTCATGAACTTGAATCCGCATACGCAGACTCT 1341
Query 1320 GAAAAAGAAGTTGTGGAGGAAATGCTTTCACCTTTTACATCCTTATACCCGCTGGTTGTG 1379
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1342 GAAAAAGAAGTTGTGGAGGAAATGCTTTCACCTTTTACATCATTATACCCGCTGGTTGTG 1401
Query 1380 GCGTGCTCTAAGAAAGGTTTTGAGACATTGGATGAGGTATACTTCCAGTTGGAGAGTTTG 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 GCGTGCTCTAAGAAAGGTTTTGAGACATTGGATGAGGTATACTTCCAGTTGGAGAGTTTG 1461
Query 1440 AGTCGAGGTGATACTCCATATAAGTCTGTTGCTGCTCTAAACTGTATAATTCTTGGCTGC 1499
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 AGTCAAGGTGATACTCCATATAAGTCTGTTGCTGCTCTAAACTGTATAATTCTTGGCTGC 1521
Query 1500 GCAAACACATGGGATCTGGATCGTGCTTATCAGACGTTTGAGGCAATAAGTGCTTCCTTT 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1522 GCAAACACATGGGATCTGGATCGTGCTTATCAGACGTTTGAGGCAATAAGTGCCTCTTTT 1581
Query 1560 GGGCTAACTCCTAATATCGATTCATACAATGCTTTACTATATGCATTTGGAAAAGTCAAG 1619
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1582 GGGCTGACTCCTAATATCGATTCATACAACGCTTTACTATATGCATTTGGAAAAGTCAAG 1641
Query 1620 AAGACTTTTGAGGCCACAAATGTATTCGAGCATCTGGTTAGCATAGGTGTTAAACCTGAT 1679
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1642 AAGACTTTCGAGGCCACGAATGTATTCGAGCATCTGGTTAGCATAGGTGTTAAACCTGAT 1701
Query 1680 TCCAGGACGTATTCATTGCTGGTTGATGCTCATCTCATTAACCGGGATCCCAAATCAGCT 1739
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 TCCCGGACGTATTCATTACTGGTTGATGCTCATCTCATTAACCGGGATCCCAAATCAGCT 1761
Query 1740 CTGACCGTCGTTGATGACATGATCAAGGCTGGATTTGAACCCTCCAGGGAGACATTGAAA 1799
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1762 CTGACCGTCGTTGATGACATGATCAAGGCTGGATTTGAACCCTCTAGGGAGACATTGAAA 1821
Query 1800 AAGCTCAGAAGGAGATGTGTCAGGGAAATGGACTATGAAAACGATGATCAAGTGGAGGCA 1859
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1822 AAGCTGAGAAGGAGATGTGTCAGGGAAATGGACGATGAAAACGATGATCAAGTGGAGGCA 1881
Query 1860 TTGGCCAAGAAGTTTCAAATCAGGATGGGAACCGAGAACCGCAGGAACATGCTGTTCAAC 1919
||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 1882 TTGGCCAAGAAGTTTCAGATCAGAATGGGAAGCGAGAACCGCAGGAACATGCTGTTCAAC 1941
Query 1920 ATAGACTACTCCAGGGGCCGAGCAATAAGCAGAT-GAAATCCAAAATG 1966
|||||||||||||||||||||||| ||| || || |||||||||||||
Sbjct 1942 ATAGACTACTCCAGGGGCCGAGCATTAAACA-ATTGAAATCCAAAATG 1988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97891062750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5