BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472784
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26340.1 | Symbols: B5 #6, ATCB5-A, CB5-A | cytochrome B5 is... 889 0.0
> AT1G26340.1 | Symbols: B5 #6, ATCB5-A, CB5-A | cytochrome B5
isoform A | chr1:9113900-9114977 FORWARD LENGTH=722
Length=722
Score = 889 bits (481), Expect = 0.0
Identities = 646/718 (90%), Gaps = 41/718 (6%)
Strand=Plus/Plus
Query 1 GCGTGGTCGACCAAACCTAAAACCCCCAAAAAAGAGAAAAATCGAAAGACCATTCGC--- 57
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 7 GCGTGGTCGACCAAACCTAAAACCCCC-AAAAAGAGAAAAATC-AAAGACCATTCGCTAT 64
Query 58 -T--CT-G-T--T-AG----AGAAGAAGATGCCGACTCTCACAAAGCTTTATTCCATGGA 105
| || | | | || |||||||||||||||| |||||||||||||||||||||||
Sbjct 65 TTCGCTCGCTACTCAGTTTCAGAAGAAGATGCCGACACTCACAAAGCTTTATTCCATGGA 124
Query 106 AGAAGCCGCAACTCACAACAAGCAAGATGACTGCTGGGTCGTCATCGACGGCAAGGTCTA 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 AGAAGCCGCAACTCACAACAAGCAAGATGACTGCTGGGTCGTCATCGACGGCAAGGTCTA 184
Query 166 TGACGTAACCTCGTATATGGATGAGCATCCCGGAGGAGATGATGTGCTTCTTGCTGTCAC 225
||| ||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 185 TGATGTATCCTCTTATATGGATGAGCATCCTGGAGGAGATGATGTGCTTCTTGCTGTCGC 244
Query 226 CGGCAAAGATGCAACAGATGATTTTGAAGACGCAGGGCACAGCAAAGATGCTAGGGAACT 285
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AGGCAAAGATGCAACGGATGATTTTGAAGACGCAGGGCACAGCAAAGATGCTAGGGAACT 304
Query 286 CATGGAGAAGTATTTTATCGGCGAGCTAGACGAATCTTCTTTACCGGAAATACCTGAGCT 345
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 305 TATGGAGAAGTATTTTATTGGCGAGCTAGATGAATCTTCTTTACCGGAAATACCTGAGCT 364
Query 346 TAAGATCTACAAGAAGGAGCAGCCAACA-GACTCTGTTCAAAAGCTTGTTGACTTGACAA 404
|||||||||||||||||| |||||| || ||||||||||| |||||| ||||||||||||
Sbjct 365 TAAGATCTACAAGAAGGACCAGCCA-CAAGACTCTGTTCAGAAGCTTTTTGACTTGACAA 423
Query 405 AGCAGTATTGGGTTGTTCCTGTTTCCATCATCACCATCTCTGTAGCGGTTAGTGTCTTGT 464
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 424 AGCAGTATTGGGTTGTTCCTGTCTCCATTATCACCATCTCTGTAGCGGTTAGTGTCTTGT 483
Query 465 TCTCTCGCAAGAGATAATAAGTAGTAGTCACTTTCTTGCCTTGAGATGCTCTGAAATATT 524
|||||||||||| ||||||||||||||| ||||||| |||||| |||||||| |||||
Sbjct 484 TCTCTCGCAAGACTTAATAAGTAGTAGTCTCTTTCTTACCTTGATATGCTCTGGGATATT 543
Query 525 GAATTACT-GGGGAATCAACTTTACACCCCCATTATAGATTTTT--A------GA---GA 572
|||||||| ||||||||||||||||||||||||||||||||||| | || ||
Sbjct 544 GAATTACTTGGGGAATCAACTTTACACCCCCATTATAGATTTTTTGAATAACAGATATGA 603
Query 573 TC-AC---T----GTTATTTTTCATTTTCATCAGATTTTGAGTTGAGATCATGTTTCAAT 624
| | | ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 604 TAGAGAGATAATTGTTATTTTTCATTTTTATCAGATTTTGAGTTGAGATCATGTTTCAAT 663
Query 625 ACAAAAATTAAT-GATATGAATATATATGATTAATGGATGGTTTGGTTTGCTTGTATC 681
||| |||| | ||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 664 ACACTTATTA-TCGATATGATTATATATGATTAATGGATGGTTTGGTTTGCTGGTATC 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5