BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472789
Length=1049
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26300.1 | Symbols: | BSD domain-containing protein | chr1:... 1580 0.0
AT1G69030.1 | Symbols: | BSD domain-containing protein | chr1:... 603 1e-171
> AT1G26300.1 | Symbols: | BSD domain-containing protein | chr1:9095900-9099754
REVERSE LENGTH=1082
Length=1082
Score = 1580 bits (855), Expect = 0.0
Identities = 985/1049 (94%), Gaps = 3/1049 (0%)
Strand=Plus/Plus
Query 3 GCAATGGAGGATCTATGGAAGAGAGCCAAATCGTTCGCAGAAGAAGCGGGTAAGAAATCT 62
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 6 GCAATGGAGGATCTATGGAAGAGGGCAAAATCGTTCGCAGAAGAAGCGGGTAAGAAGTCT 65
Query 63 CAGACCATCACCCAATCATCCTCCGCGACGTTCGTCAATCTCGTCACCGAGACTGCTAAG 122
||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 66 CAGACGATAACACAATCATCCTCCGCGACCTTCGTCAATCTCGTCACCGAGACTGCTAAG 125
Query 123 AAATCCAAGGAACTCGCTCTCGAAGCTTCTAAGAAAGCCGATCAATTCAATGTTTCCGAT 182
||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||
Sbjct 126 AAATCCAAGGAACTCGCTCTCGAAGCTTCGAAGAAAGCTGATCAATTCAATGCCGCCGAT 185
Query 183 TTCGTTGCCGAAACGGCTAAAAAATCTAAAGAATTCGCTGCCGAAGCTTCAAAGAAGGCG 242
|||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 186 TTCGTTGCTGAAACGGCTAAGAAATCCAAAGAATTCGCTGCTGAAGCTTCAAAGAAGGCG 245
Query 243 GATCAGTTCAAAGTCGCCGCGCTGAAGCAAGCTGATCAGATCCAGAACATCAAATCGATC 302
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 246 GATCAGTTCAAAGTCGCCGCGCTGAAACAAGCTGATCAGATCCAGAACATCAAATCGATC 305
Query 303 GCTGATATTATCGGGTCCGGGTCAGGATCAGGATCCGGTTCCGAAGCAGAGCTTCTCGAA 362
|||||||| |||||| ||||| | || |||||||||||||| ||||| ||||||||||||
Sbjct 306 GCTGATATAATCGGGACCGGGACCGGGTCAGGATCCGGTTCAGAAGCGGAGCTTCTCGAA 365
Query 363 TTCGGTGTAACGGATGATTTGAGAGAGTTCGTTGAAGGCTTGACCTCTGCTACATTCCAA 422
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 366 TTCGGTGTAACGGATGATTTGAGAGAGTTCGCTGAAGGCTTGACCTCTGCTACATTCCAA 425
Query 423 GCTTTTCCTGAACAAGATCAACCGGATGAAGTTGCTGATGTGACAACGAATTCTTCGAAT 482
||||||||||| ||||||||| |||||||||| | ||||||| ||| ||| ||||||||
Sbjct 426 GCTTTTCCTGATCAAGATCAAGGGGATGAAGTTTCCGATGTGATAACAAATGCTTCGAAT 485
Query 483 GTTCGAAAGGATCTATCGGATTGGCAAGAGAGACATGCCACTCTGGTTCTAACCTCTGTC 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GTTCGAAAGGATCTCTCGGATTGGCAAGAGAGACATGCCACTCTGGTTCTAACCTCTGTC 545
Query 543 AAGCAAATCTCCAAGTTAAGATACGAACTTTGCCCGCGATTCATGAAAGAAAGGAGGTTC 602
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 546 AAGCAAATCTCCAAGTTAAGATACGAACTTTGCCCTCGTTTCATGAAAGAAAGGAGGTTC 605
Query 603 TGGAGGATATATTTCACACTAGTGAGCACTCATGTTTCACCATATGAGAGGAGGTACATG 662
|||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 606 TGGAGGATTTATTTCACACTAGTGAGCACTCATGTTTCTCCATATGAGAGGAAGTACATG 665
Query 663 GAGGCACTTAAGACCAAAGCAGAACATGAAAATGAAGAAGCTAAGAAGGCCCCAGCGACT 722
|||| |||||||||||||| ||| |||| ||||||||||||||||||||| |||||||||
Sbjct 666 GAGGAACTTAAGACCAAAGGAGAGCATGGAAATGAAGAAGCTAAGAAGGCTCCAGCGACT 725
Query 723 GGAGAGACAGAAACAGTGGAAAAGAATGTTGCAATCAGTAGAACATCTACTGCGACTTCT 782
||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||
Sbjct 726 GGAGAGACAGAAACAGTAGAAAAGAATGTTGCAATCCGTAGAACATCTACTGCGTCTTCT 785
Query 783 GAGCAGGATCTGGATACATTCCTTTTGGGAGATCTCGAAGACAGTGATGGAA-CTCCAGA 841
||||||||||||||||||||||| ||||| ||||| ||||||||||||| || |||||||
Sbjct 786 GAGCAGGATCTGGATACATTCCTGTTGGGTGATCTAGAAGACAGTGATG-AAGCTCCAGA 844
Query 842 TGATGGTGATGGAAGCCTTGAGGATGACTTTGACAAGATTGGAAACTCAGATGTTGAAGA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 845 TGATGGTGATGGAAGCCTTGAGGATGACTTTGACAAGATTGGAAACTCAGATGTTGAAGA 904
Query 902 CGAGAAGCAATCAACTAAAGCTACAACAAATGCAGGAAACTAAGTGTCTTGTTAGTTT-A 960
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 905 CGAGAAGCAATCATCTAAAGCTACAACAAATGCAGGAAACGAAGTGTCTTGTTAGTTTTA 964
Query 961 ACATCCAATTAGAAAAAGGTAAATGAAGACGATGCTTGAAATGTATAGTTTTGATTTAGT 1020
| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 965 AGTTCCAATTAGAAAAGGGTAAATGAAGAAGATGCTTGAAATGTATAGTTTTGATTTAGT 1024
Query 1021 AAGGGACGCATAAGAAGACCGCGATTTCG 1049
||| || ||||| ||||||| |||||||
Sbjct 1025 AAGTGATGCATACGAAGACCTTGATTTCG 1053
> AT1G69030.1 | Symbols: | BSD domain-containing protein | chr1:25947265-25949262
REVERSE LENGTH=1118
Length=1118
Score = 603 bits (326), Expect = 1e-171
Identities = 768/967 (79%), Gaps = 87/967 (9%)
Strand=Plus/Plus
Query 6 ATGGAGGATCTATGGAAGAGAGCCAAATCGTTCGCAGAAGAAGC-GGGTAAGAAATCTCA 64
||||| ||||||||||||||||| |||||||| ||||||||||| | | |||||||| ||
Sbjct 1 ATGGAAGATCTATGGAAGAGAGCGAAATCGTTTGCAGAAGAAGCAGCG-AAGAAATCACA 59
Query 65 GACCAT--CAC-CCAATCATCCTCCGCGACGTTCGTCAATCTCGTCACCGAGACTGCTAA 121
||||| ||| |||||||| || | || |||||||||||||||||||| || |||||
Sbjct 60 AACCATAACACTACAATCATCTTCAACAACATTCGTCAATCTCGTCACCGAAACCGCTAA 119
Query 122 GAAATCCAAGGAACTCGCTCTCGAAGCTTCTAAGAAAGCCGA-TCAATTCAATGTTTCCG 180
|||||||| || ||||||||||||||||||||||||| || || | ||||||| ||||
Sbjct 120 AAAATCCAAAGAGTTCGCTCTCGAAGCTTCTAAGAAAGCTGATTCGA-TCAATGTCTCCG 178
Query 181 ATTTCGTTGCCGAAACGGCTAAAAAATCTAAA-GAATTCGCTGCCGAAGCTTCAAAGAAG 239
| ||||| ||||| ||||| || || || ||| ||||||||||| || | ||||| |||
Sbjct 179 AGTTCGTCGCCGAGACGGCGAAGAAGTC-AAAGGAATTCGCTGCTGAGGTTTCAACGAAA 237
Query 240 GCGGATCAGTTCAAAGTCGCCGCGCTGAAGCAAGCTGATCAGATCCAGAACATCAAATCG 299
||||||||| ||||||||| || |||| |||||||||||||||||||| || ||||||
Sbjct 238 GCGGATCAGCTCAAAGTCGTAGCATTGAAACAAGCTGATCAGATCCAGAATATAAAATCG 297
Query 300 ATCGCTGATATTAT--C--G-GG--TCCG-GG-TCAGGATC---------AGGATCCG-G 340
|| || || ||||| | | || | | || |||||||| || || | |
Sbjct 298 ATTGCCGACATTATACCTGGAGGATTAGGAGGATCAGGATCTGGTGGTGGTGGTTCTGAG 357
Query 341 --TTCCGAAGCAGAGCTT-CTCGAATTCGGTGTAACGGATGATTTGAGAGAGTTCGTTGA 397
||| ||| | |||||| | | || ||| | || ||||||||||||||||| ||| |
Sbjct 358 ATTTCTGAATCTGAGCTTGTTAG-TTTTGGTATTACTGATGATTTGAGAGAGTTTGTTAA 416
Query 398 AGGCTTGACCTCTGCTACATTCCAAGCTTTTCCTGAACAAGATCAACCGGATGAAGTTGC 457
||| ||||| |||||||| ||||| |||||||||||||||||| || || |||||| |
Sbjct 417 AGGTTTGACATCTGCTACGTTCCAGGCTTTTCCTGAACAAGATGAATCGTCGGAAGTTTC 476
Query 458 TGATGT-GACAACGAA-TTCTTCGAATGTTCGAAAGGATCTATCGGATTGGCAAGAGAGA 515
|||| | || ||| || | | ||||||||||| |||||||| || || ||||| ||||||
Sbjct 477 TGATTTGGA-AAC-AAGTGCGTCGAATGTTCGGAAGGATCTTTCTGAGTGGCAGGAGAGA 534
Query 516 CATGCCACTCTGGTTCTAACCTCTGTCAAGCAAATCTCCAAGTTAAGATACGAACTTTGC 575
||||||||||| ||||| |||||||||||||| || ||||| ||||| ||||| |||
Sbjct 535 CATGCCACTCTTGTTCTTGGTTCTGTCAAGCAAATTTCGAAGTTGAGATATGAACTATGC 594
Query 576 CCGCGA-TTCATGAAAGAAAGGAGGTTCTGGAGGATATA-TTTCACACT-AGTGAGCACT 632
|| ||| || ||||||||||||||||||||||||||||| ||| || || ||||||||||
Sbjct 595 CCACGAGTT-ATGAAAGAAAGGAGGTTCTGGAGGATATACTTT-AC-CTTAGTGAGCACT 651
Query 633 CATGTTTCACCATATGAGAGGAGGTACATGGAGGCACTTAAGACCAAAGCAGA-ACATGA 691
|||||| |||||||||| |||| ||||||||||| ||||| || ||||||||| | | |
Sbjct 652 CATGTTGCACCATATGAAAGGAAGTACATGGAGGAACTTAGGAACAAAGCAGAGAG-T-A 709
Query 692 AA-ATGAAGAAGCTAAGAAG-GCCCCAGCGACT-GGAGAG-ACAGAAACAG-TGGAAAAG 746
|| ||||||||||||||||| | || || | || ||| || |||||| ||| || |||||
Sbjct 710 AAGATGAAGAAGCTAAGAAGAGTCC-AGGG-CTTGGA-AGGACAGAATCAGCTG-AAAAG 765
Query 747 AATGTTGCAATCAGTAGAACATCTACTGCGA-CTTCTGAGCAGGATCTGGATACATTCCT 805
|| || | | | ||||||||| | | |||||||| ||||| |||||||||||
Sbjct 766 AA-----CA----G-A-AT-ATCTACTGC-ATCGTCTGAGCAAGATCTCGATACATTCCT 812
Query 806 TTTGGGAGATCTCGAAGACAGTGATGGAA-CTCC--A-GATG---ATGGTGATG--G-A- 854
|||||||||| ||||||||||| | || |||| | |||| ||||||||| | |
Sbjct 813 GCTGGGAGATCTAGAAGACAGTGACG-AAGCTCCTGATGATGGTGATGGTGATGATGGAG 871
Query 855 -A-GCCT---TGAGGATGACTTTGACAAGATTGGAAACTCAGATGTTGAAGACGAGAA-G 908
| |||| ||| |||||||||||||||||||| ||||| |||||||| || ||||| |
Sbjct 872 GAAGCCTGGGTGATGATGACTTTGACAAGATTGGCAACTCTGATGTTGAGGAAGAGAAAG 931
Query 909 CAATCAA 915
||||||
Sbjct 932 -AATCAA 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51439766528
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5