BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472791
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting basic-he... 1249 0.0
AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 300 3e-80
> AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting basic-helix-loop-helix
5 | chr1:9087104-9089378 FORWARD LENGTH=1626
Length=1626
Score = 1249 bits (676), Expect = 0.0
Identities = 777/826 (94%), Gaps = 5/826 (1%)
Strand=Plus/Plus
Query 168 AGAATCAGCTGGCTTGTTTCTTCAAGATACA-ATGATTCCTAGTGGATCCAAACTAGATA 226
||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 440 AGATTCAACTGGCTTGTTTCTTCAAGATACACA-GATTCCTAGTGGATCCAAACTAGATA 498
Query 227 ATGGTTCTCTTAAGGATGCATCTAAGTTGGTGAAAGACAGATCGA-T--TAATGTATCAG 283
||||| |||||| |||||||||||||| |||||||| ||||||| | |||||||||||
Sbjct 499 ATGGTCCTCTTACTGATGCATCTAAGTTAGTGAAAGAGAGATCGATTAATAATGTATCAG 558
Query 284 ATGATTCTCAATCTAGTGGAGGTAATGGTCATGATGATGCTAAATGTGGGGTAACATCTT 343
| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 559 AGGATTCTCAATCTAGTGGAGGTAATGGTCATGATGATGCTAAGTGTGGGCAAACATCTT 618
Query 344 CCAAGGGGTTTAACAGTAAGAAGAGGAAAAGAATTGGGAAGGATTGTGAAGGAGAAGAAG 403
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 619 CCAAGGGGTTTAGTAGTAAGAAGAGGAAAAGAATTGGGAAGGATTGTGAAGAAGAAGAAG 678
Query 404 ATAAAATGCAGAAGGATGAGCAAAGTCCAAATTCAAATGCTAACAAGACAAACAGTGAGA 463
|||||| ||| ||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 679 ATAAAAAGCAAAAGGATGAGCAAAGTCCAACTTCAAATGCGAACAAGACAAACAGTGAGA 738
Query 464 AACAAGCTTATGATTCTTTAAAGGATGGGTATATTCACATGAGGGCACGGAGAGGCCAGG 523
| ||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 739 AGCAACCTTCTGATTCTTTAAAGGATGGGTATATTCACATGAGGGCACGAAGAGGCCAGG 798
Query 524 CTACTAATAGTCACAGTCTTGCAGAAAGAGTAAGGAGAGAAAAAATCAGTGAAAGGATGA 583
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 799 CTACTAATAGTCACAGTCTTGCTGAAAGAGTAAGAAGAGAAAAAATCAGTGAAAGGATGA 858
Query 584 AGTTCTTGCAAGATCTTGTACCGGGTTGCGACAAGGTGACTGGGAAGGCAGTTATGCTCG 643
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 859 AGTTCTTGCAAGATCTTGTGCCAGGTTGCGACAAGGTGACTGGTAAGGCAGTTATGCTCG 918
Query 644 ACGAAATCATTAACTATGTGCAATCACTTCAATGCCAGATCGAGTTTTTATCGATGAAAC 703
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 919 ATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAGTTTTTATCGATGAAAC 978
Query 704 TTTCGGCTGTGAATCCTGTGCTCGATTTTAACCTCGAAAGCCTCCTTGCAAAAGATGCTC 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 TTTCGGCTGTGAATCCTGTGCTCGATTTTAACCTCGAAAGCCTCCTTGCAAAAGATGCTC 1038
Query 764 TTCAATCATCTGCACCGACATTTCCCCAAAACATGTCGATGCTTTATCCTCCTCTATCAT 823
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 1039 TTCAATCATCTGCACCGACATTTCCCCACAACATGTCGATGCTTTATCCTCCTGTATCGT 1098
Query 824 ATCTCTCTCAAACAGGATTCATGGAACCCAACCGTTCCTCAATGTCGCTATTGAATGGGG 883
||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||| |
Sbjct 1099 ATCTCTCTCAAACAGGATTCATGCAACCGAACATTTCCTCAATGTCGCTATTGAGTGGAG 1158
Query 884 GATTAAAACGGCAGGAAACACATGGATACGAAAGTGATCACCACAATGTTGTCCACATGA 943
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1159 GATTAAAACGGCAGGAAACACATGGATATGAAAGTGATCACCACAATCTTGTCCACATGA 1218
Query 944 ACCATGAAACTGGCACTGCACCTGATCATGAAGACGCAACAGGTGA 989
|||||||||| ||||||||||||||||||||||| |||||| |||
Sbjct 1219 ACCATGAAACCGGCACTGCACCTGATCATGAAGATACAACAGCTGA 1264
Score = 291 bits (157), Expect = 2e-77
Identities = 163/166 (98%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 4 GACGAGTTTGCCGCAAAGAAGAAGGATTTGGTCAATACGCCAGTGGATTTGTATCCTCCG 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GACGAGTTTGCCGCAAAGAAGAAGGATTTGGTCAATACGCCAGTGGATTTGTATCCTCCG 182
Query 64 GAGAATCCAATGTCGGGTCCTTCTCAGATGATGGATTCATTCAGAGAAACTCTTTGGCAT 123
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 183 GAGAATCCAATGTTGGGTCCTTCTCCGATGATGGATTCATTCAGAGAAACTCTTTGGCAT 242
Query 124 GATGGTGGTTTCAATGTCCACACAGATGCAGGCACTTCCTTTAGAG 169
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 243 GATGGTGGTTTCAATGTCCACACAGATGCAGACACTTCCTTTAGAG 288
Score = 243 bits (131), Expect = 4e-63
Identities = 196/224 (88%), Gaps = 18/224 (8%)
Strand=Plus/Plus
Query 1045 GAAGGTGGAGCCGTAGATGGTTCTTCTTCACTTTGTACT---C---A---GCTG---TA- 1091
||||||||||||||||||| ||||||||||||||||||| | | |||| ||
Sbjct 1268 GAAGGTGGAGCCGTAGATGTTTCTTCTTCACTTTGTACTCAGCTTTAGCTGCTGATATAG 1327
Query 1092 ---GCTGCGGTCGAGAATTTTATTAACTTTGAACAGAAGAATGAAAAAC-AAACAGAGGA 1147
|| ||||||||||||||||||||||| |||||||||| || ||||| ||||||||||
Sbjct 1328 TGCGCCGCGGTCGAGAATTTTATTAACTTCGAACAGAAGAGTG-AAAACGAAACAGAGGA 1386
Query 1148 GGAAGCAGATCTTGTCTTTCTAATATTAACAGCTCCGGGAGAAAGAGTCGAGAGTAAGAA 1207
|||||||||| |||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct 1387 GGAAGCAGATTTTGTCTTTGAAATATTGACAGCTCCCGGAGAAAGAGTCGAGAGTAAGAA 1446
Query 1208 TCAACAATGTTGTGTACTGAATAGCTACTGTCTGCTTCTTTTGT 1251
|||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1447 TCAACAATGTTGTGTAATGAATAGCTACTGTCTGCTTCTTTTGT 1490
> AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915012-25917906 FORWARD
LENGTH=2300
Length=2300
Score = 300 bits (162), Expect = 3e-80
Identities = 263/311 (85%), Gaps = 10/311 (3%)
Strand=Plus/Plus
Query 463 AAAC-AAGCTTATGATTCTTTAAAGGATGGGTATATTCACATG-A-GGGCACGGAGAGGC 519
|||| ||| || |||| || ||| ||||| |||||| |||| | ||||||| ||||||
Sbjct 1476 AAACAAAG-TTCTGATCCTCCAAAAGATGGATATATT--CATGTACGGGCACGAAGAGGC 1532
Query 520 CAGGCTACTAATAGTCACAGTCTTGCAGAAAGAGTAAGGAGAGAAAAAATCAGTGAAAGG 579
||||| || ||||| || ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1533 CAGGCCACAAATAGCCATAGTCTTGCAGAAAGAGTTAGGAGAGAAAAAATTAGTGAAAGG 1592
Query 580 ATGAAG-TTCTTGCAAGATCTTGTACCGGGTTGCGACAAGGTGACTGGGAAGGCAGTTAT 638
|||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1593 ATGAAGTTTCTT-CAAGATCTAGTACCGGGTTGCAACAAGGTGACTGGGAAGGCAGTTAT 1651
Query 639 GCTCGACGAAATCATTAACTATGTGCAATCACTTCAATGCCA-GATCGAGTTTTTATCGA 697
||| ||||||||||| ||||| || |||||||| ||| |||| | | |||||||||||||
Sbjct 1652 GCTTGACGAAATCATAAACTACGTACAATCACTACAACGCCAAGTT-GAGTTTTTATCGA 1710
Query 698 TGAAACTTTCGGCTGTGAATCCTGTGCTCGATTTTAACCTCGAAAGCCTCCTTGCAAAAG 757
|||||||| | ||||||| || | || |||||||| ||| | || ||||||||||
Sbjct 1711 TGAAACTTGCAACTGTGAACCCACAAATGGACTTTAACCTTGAAGGTCTTCTTGCAAAAG 1770
Query 758 ATGCTCTTCAA 768
|||| ||||||
Sbjct 1771 ATGCACTTCAA 1781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5