BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472794
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26218.1 | Symbols: | other RNA | chr1:9071058-9072273 REVE... 1230 0.0
AT1G26220.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1107 0.0
> AT1G26218.1 | Symbols: | other RNA | chr1:9071058-9072273 REVERSE
LENGTH=1135
Length=1135
Score = 1230 bits (666), Expect = 0.0
Identities = 739/775 (95%), Gaps = 1/775 (0%)
Strand=Plus/Minus
Query 1 TTTATCCAGATTCAGGGAAACTAAAAAACCATCCTTTTGTCTGATTCCATGAAATTGAGC 60
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1135 TTTATCCAAATTCAGGGAAACTAAAAAACCATCCTTTTGTCTGATTCCATGTAATCGAGC 1076
Query 61 TCCTAAAATTCGACACTTTAACAAGAAATAGTGTATACCATGCTTCTCGGAGGCACAATC 120
||||||||||| |||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1075 TCCTAAAATTCAACACTTGAACAAAAAATAGTGTATACCATGTTTCTCGGAGGCACAATC 1016
Query 121 TCCACTCCTCCAGCTTCTATCCGGTTAAGGTCCACATTAAACCCGCAAAACGCAGTCACA 180
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1015 TCCACTCCTCCAGCTTCTCTCCGGTTAAGGTCCACATTAAACCCACAAAACGCAGTCACA 956
Query 181 CAATCATCATCACAAGCTACGTTTCCAGCTGCAACGCAACGAAAGCCACCAAGCTACTCA 240
||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||
Sbjct 955 CAATCATCATCACAAGCGACGTTTCCAGCTGCAATGCAACGAAAGCCACCAAGTTACTCA 896
Query 241 ATCAGCGACGAAGATCTCGAATCCAGAGGCTTTCTTCTCCGTAGAACAGCAGAAGGACTT 300
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 895 ATCAGCGACGAAGATCTCGAATCCAGAGGCTTTCTTCTCCGTCGAACAACAGAAGGACTT 836
Query 301 AACTTAGATCAGCTGAATTCAGTCTTTGTAGCCGTGGGATTCCCACGTCGTGACACGGCG 360
|||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 835 AACTTAGACCAGCTGAATTCAGTCTTTGCAGCCGTGGGATTCCCTCGTCGTGACACGGCG 776
Query 361 AAGATCGAGGTGGCGTTGCAGCACACAGACGCGTTGCTTTGGGTGGAGTACGAGAAAACG 420
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 775 AAAATCGAGGTGGCGTTGCAGCACACAGACGCGTTGCTTTGGGTAGAGTACGAGAAAACG 716
Query 421 CGGCGGCCTGTGGCGTTTGCGAGAGCGACCGGTGACGGAGTATTCAATGCGATCATATGG 480
||| ||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 715 CGGAGGCCTGTAGCGTTTGCGAGAGCAACCGGTGACGGAGTTTTCAATGCGATCATATGG 656
Query 481 GATGTGGTGGTTGATCCGTCGTTTCAAAGCTGTGGACTTGGGAAGGCGGTGATGGAGCGG 540
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GATGTTGTGGTTGATCCATCGTTTCAAAGCTGTGGACTTGGGAAGGCGGTGATGGAGCGG 596
Query 541 TTGATTGAGGATTTGCAGGTGAAAGGGATCTGTAACATCGCTCTGTATTCGGAGCCTCGA 600
|||||||||||||| |||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 595 TTGATTGAGGATTTACAGGTGAAAGGGATTTGTAACATTGCTCTGTATTCAGAGCCTCGA 536
Query 601 GTTCTCGGGTTTTATCGCCCGCTTGGGTTTGTCTCTGACCCGGATGGGATCAAAGGAATG 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 535 GTTCTCGGGTTTTATCGCCCGCTTGGGTTCGTCTCTGACCCGGATGGGATCAAAGGAATG 476
Query 661 GTTTTTATACGCAAACAGAGAAACAAGAAATGAAAAGTTCCAAACTTTTATAAATTTTAA 720
||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||
Sbjct 475 GTTTTTATACGCAAACAGAGAAACAAGAAATAAAAAGTTTGAAACTTT-ATAAATTTTAA 417
Query 721 TTTCGTAAATTCACAGATTACAATGTCTCTTTAACTACACTTTGTTGTACAAGCT 775
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 416 TTTCGTAAATGCACAGATTACAATGTCTCTTTAACTACACTTTCTTGTACAAGCT 362
Score = 501 bits (271), Expect = 6e-141
Identities = 314/333 (94%), Gaps = 9/333 (3%)
Strand=Plus/Minus
Query 775 TCCTTCCATGTTCAGTTCTCTGTTTTGATTTTGATTTTGATGGTCAAGAAGAAGCGGCTT 834
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 331 TCCTTCCATGTTCAATTCTCTGTTTTGGTTTTGATTTTGATGGTCAAGAAGAAGCTGCTT 272
Query 835 TGGCATGGTGGAAGAAGGCAACGGAACAGAGGATGGAAGCGATGAGAGCGAAGAACCCTA 894
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 271 TGGCATGGTGGAAGAAGGCGACGGAGCAGAGGATGGAAGCGATGAGAGCGAAGAACCCTA 212
Query 895 ATCCGACCATCAGAGAGATTCCGGCGACGATCAGATCCATTAGCATCATCAGCACCATCT 954
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 211 ATCCGACCATCAGAGAGATTCCGGCGACGATCAGATCCATTAGCGTCATCAGCACCATCT 152
Query 955 TAGCTTTCTTCGATCTCTTC-TT-T-----AGCTACGGTAAGATTTAGTGTTTTGGGGAT 1007
|||||||||||||||||||| || | ||||| ||||||||||||||||||||||||
Sbjct 151 TAGCTTTCTTCGATCTCTTCGTTGTTTCTCAGCTATGGTAAGATTTAGTGTTTTGGGGAT 92
Query 1008 AATTCAAACAAATGATTCGAAGAAGAAGTTAAGCCTCGCATTGACACGTTTATGAGATGA 1067
|||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 91 AATTTA--CAAATGATTCGAAGAAGAAGTGAAGCCACGCATTGACACGTTTATGAGATGA 34
Query 1068 CCAGAGCTTATGACATTTAGCGCAATTTCAGAG 1100
|||||||||||||||||||||||||||||||||
Sbjct 33 CCAGAGCTTATGACATTTAGCGCAATTTCAGAG 1
> AT1G26220.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr1:9071140-9071861 FORWARD LENGTH=722
Length=722
Score = 1107 bits (599), Expect = 0.0
Identities = 660/690 (96%), Gaps = 1/690 (0%)
Strand=Plus/Plus
Query 86 AAATAGTGTATACCATGCTTCTCGGAGGCACAATCTCCACTCCTCCAGCTTCTATCCGGT 145
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 4 AAATAGTGTATACCATGTTTCTCGGAGGCACAATCTCCACTCCTCCAGCTTCTCTCCGGT 63
Query 146 TAAGGTCCACATTAAACCCGCAAAACGCAGTCACACAATCATCATCACAAGCTACGTTTC 205
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 64 TAAGGTCCACATTAAACCCACAAAACGCAGTCACACAATCATCATCACAAGCGACGTTTC 123
Query 206 CAGCTGCAACGCAACGAAAGCCACCAAGCTACTCAATCAGCGACGAAGATCTCGAATCCA 265
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 124 CAGCTGCAATGCAACGAAAGCCACCAAGTTACTCAATCAGCGACGAAGATCTCGAATCCA 183
Query 266 GAGGCTTTCTTCTCCGTAGAACAGCAGAAGGACTTAACTTAGATCAGCTGAATTCAGTCT 325
||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 184 GAGGCTTTCTTCTCCGTCGAACAACAGAAGGACTTAACTTAGACCAGCTGAATTCAGTCT 243
Query 326 TTGTAGCCGTGGGATTCCCACGTCGTGACACGGCGAAGATCGAGGTGGCGTTGCAGCACA 385
||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 244 TTGCAGCCGTGGGATTCCCTCGTCGTGACACGGCGAAAATCGAGGTGGCGTTGCAGCACA 303
Query 386 CAGACGCGTTGCTTTGGGTGGAGTACGAGAAAACGCGGCGGCCTGTGGCGTTTGCGAGAG 445
||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||||
Sbjct 304 CAGACGCGTTGCTTTGGGTAGAGTACGAGAAAACGCGGAGGCCTGTAGCGTTTGCGAGAG 363
Query 446 CGACCGGTGACGGAGTATTCAATGCGATCATATGGGATGTGGTGGTTGATCCGTCGTTTC 505
| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 364 CAACCGGTGACGGAGTTTTCAATGCGATCATATGGGATGTTGTGGTTGATCCATCGTTTC 423
Query 506 AAAGCTGTGGACTTGGGAAGGCGGTGATGGAGCGGTTGATTGAGGATTTGCAGGTGAAAG 565
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 424 AAAGCTGTGGACTTGGGAAGGCGGTGATGGAGCGGTTGATTGAGGATTTACAGGTGAAAG 483
Query 566 GGATCTGTAACATCGCTCTGTATTCGGAGCCTCGAGTTCTCGGGTTTTATCGCCCGCTTG 625
|||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 484 GGATTTGTAACATTGCTCTGTATTCAGAGCCTCGAGTTCTCGGGTTTTATCGCCCGCTTG 543
Query 626 GGTTTGTCTCTGACCCGGATGGGATCAAAGGAATGGTTTTTATACGCAAACAGAGAAACA 685
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GGTTCGTCTCTGACCCGGATGGGATCAAAGGAATGGTTTTTATACGCAAACAGAGAAACA 603
Query 686 AGAAATGAAAAGTTCCAAACTTTTATAAATTTTAATTTCGTAAATTCACAGATTACAATG 745
|||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 604 AGAAATAAAAAGTTTGAAACTTT-ATAAATTTTAATTTCGTAAATGCACAGATTACAATG 662
Query 746 TCTCTTTAACTACACTTTGTTGTACAAGCT 775
|||||||||||||||||| |||||||||||
Sbjct 663 TCTCTTTAACTACACTTTCTTGTACAAGCT 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53915385330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5