BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472797
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26210.1 | Symbols: ATSOFL1, SOFL1 | SOB five-like 1 | chr1:... 1772 0.0
AT1G26208.1 | Symbols: | other RNA | chr1:9066636-9068432 REVE... 536 1e-151
> AT1G26210.1 | Symbols: ATSOFL1, SOFL1 | SOB five-like 1 | chr1:9067039-9068207
FORWARD LENGTH=1073
Length=1073
Score = 1772 bits (959), Expect = 0.0
Identities = 1033/1068 (97%), Gaps = 8/1068 (1%)
Strand=Plus/Plus
Query 1 AAAATATTTGTTTAAAGAAAAGTACATTTAGTTTATATTGAAAAAGAAGAACAATAGGCT 60
|||||||||||||||||||||||| | |||||| |||||||||||||||| | |||||||
Sbjct 8 AAAATATTTGTTTAAAGAAAAGTATAGTTAGTTGATATTGAAAAAGAAGAGC-ATAGGCT 66
Query 61 TTTAATTCTATAAGAGAGAGTACTTTATAATGAA-GAAGGCACTAACCTTCCTTCCCTTG 119
|||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||
Sbjct 67 TTTAATTCTATAAGAGAGTGTACTTTATAATGAAGGGAGGCACTAACCTTCCTTCCCTTG 126
Query 120 ATATATATCTGCAATGAGCTTTGTCTGGTAGTGCTTCAATTGAGTGAAAACAATGGTGCT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 ATATATATCTGCAATGAGCTTTGTCTGGTAGTGCTTCAATTGAGTGAAAACAATGGTGCT 186
Query 180 AGGGTTGCCATGTGGTGAAACTTACTCCTTCTCTTCAATTATATGAGGCTTCCTATAGGC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 AGGGTTGCCATGTGGTGAAACTTACTCCTTCTCTTCAATTATATGAGGCTTCCTATAGGC 246
Query 240 TCCGGTTTTTCTTGATACTTCTAAAAACAC-AAAAGAAATTTAAT-TTTATTGATGAT-G 296
||||| ||||||||||||||| |||||||| ||||||||||| || |||||||||||| |
Sbjct 247 TCCGGCTTTTCTTGATACTTCAAAAAACACAAAAAGAAATTT-ATATTTATTGATGATGG 305
Query 297 --GAAGAGCAAAGCAAATGAGAGACAGAGACATAGATCCTATATCAGAGAGTATATTGGT 354
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 306 AAGAAGAGCAAAGCAAATGAGAGACAGAGACACAGACCCTATATCAGAGAGTAAATTGGT 365
Query 355 GAAGTGGATTGAATCACATAAGCCATGGAGTCTCCGAGGAACCATGGAGGCTCTGAAGAG 414
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 366 GAAGTGGATTGGATCACATAAGCCATGGAGTCTCCGAGAAACCATGGAGGCTCTGAAGAG 425
Query 415 GAGGAATACAGCAGTTGTGAGTCAGGGTGGACTATGTACATAGAAGACGCCTTCCATGGA 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GAGGAATACAGCAGTTGTGAGTCAGGGTGGACTATGTACATAGAAGACGCCTTCCATGGA 485
Query 475 AATGACCATTCATCTGTTGTTGTtgatgatgatgatgatgatacacaggtaaaagaggct 534
|||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 486 AATGACCAATCATCTGTTGTTGTCGATGATGATGATGATGATACACAGGTTAAAGAGGCT 545
Query 535 gatgatggctatgagaacgatgatgGCCACAGTAGTGATGATGGTGGTGATGAAGAGAGT 594
|||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 546 GATGATGGTTATGAGAACGATGATGGCGATACTAGTGATGATGGTGGTGATGAAGAGAGT 605
Query 595 GATGATTCCATGGCTTCTGATGCATCCTCGGGGCCTAGCAATCAGCTTCCAAAGAACATC 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 606 GATGATTCCATGGCTTCTGATGCATCCTCGGGGCCTAGCAATCAGCTTCCAAAGCACATC 665
Query 655 AACAAACATGCAGCTAGGAAGAATGGTACTAAACAAGTCTACCTTCAAAAACGCCAACAC 714
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 666 AACAAACATGCAGCTAGGAAGAATGGTTCTAAACAAGTCTACCTTCAAAAACGCCAACAC 725
Query 715 ACAGAGAAAACATTCAGCAACGAAGGAGAAAAATCAGACCTCAAAGCTAGAACAAGAACA 774
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 ACAGAGAAAACAATCAGCAACGAAGGAGAAAAATCAGACCTCAAAGCTAGAACAAGAACA 785
Query 775 AGTGCAGCTAGTCGTGTCCTGAGTAGAGGCAAGGTGAGCAAAACCAAATAAAACTCATGG 834
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 786 AGTGCAGCTAGTCGTGTCCAGAGTAGAGGGAAGGTGAGCAAAACCAAATAAAACTCATGG 845
Query 835 CGAATAAGAGAAGAAGATATGGGGGTTCACAAAGAATCCAAATCCTGTAGTGAAGAGAGA 894
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 CGAATGAGAGAAGAAGATATGGGGGTTCACAAAGAATCCAAATCCTGTAGTGAAGAGAGA 905
Query 895 CGTTTCAGGGGTCTCACCAATCGTGTTGTTTGCCTTTAATAAGCCATGTGTAGGTAGTTG 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 CGTTTCAGGGGTCTCACCAATCGTGTTGTTTGCCTTTAATAAGCCATGTGTAGGTAGTTG 965
Query 955 CATTGTTTTCTTTTGCCGGAATATGtttttttGTAGAAGCTGTCCTAAATAAGTTATCTG 1014
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 966 CATTGTTTTCTTTTGCCGGAATATGTTTTTTTGTAGAAGCTGTCCCAAATAAGTTATCTG 1025
Query 1015 CACGGTTCTCCGTTGGAACCCTGTTATATAATATGTACCTTGTTCTTC 1062
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 CACGGTTCTCCGTTGGAACCCTGTTATATAATATGTACCTTGTTCTTC 1073
> AT1G26208.1 | Symbols: | other RNA | chr1:9066636-9068432 REVERSE
LENGTH=1499
Length=1499
Score = 536 bits (290), Expect = 1e-151
Identities = 310/320 (97%), Gaps = 0/320 (0%)
Strand=Plus/Minus
Query 374 AAGCCATGGAGTCTCCGAGGAACCATGGAGGCTCTGAAGAGGAGGAATACAGCAGTTGTG 433
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 695 AAGCCATGGAGTCTCCGAGAAACCATGGAGGCTCTGAAGAGGAGGAATACAGCAGTTGTG 636
Query 434 AGTCAGGGTGGACTATGTACATAGAAGACGCCTTCCATGGAAATGACCATTCATCTGTTG 493
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 635 AGTCAGGGTGGACTATGTACATAGAAGACGCCTTCCATGGAAATGACCAATCATCTGTTG 576
Query 494 TTGTtgatgatgatgatgatgatacacaggtaaaagaggctgatgatggctatgagaacg 553
|||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 575 TTGTCGATGATGATGATGATGATACACAGGTTAAAGAGGCTGATGATGGTTATGAGAACG 516
Query 554 atgatgGCCACAGTAGTGATGATGGTGGTGATGAAGAGAGTGATGATTCCATGGCTTCTG 613
|||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 ATGATGGCGATACTAGTGATGATGGTGGTGATGAAGAGAGTGATGATTCCATGGCTTCTG 456
Query 614 ATGCATCCTCGGGGCCTAGCAATCAGCTTCCAAAGAACATCAACAAACATGCAGCTAGGA 673
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 455 ATGCATCCTCGGGGCCTAGCAATCAGCTTCCAAAGCACATCAACAAACATGCAGCTAGGA 396
Query 674 AGAATGGTACTAAACAAGTC 693
|||||||| |||||||||||
Sbjct 395 AGAATGGTTCTAAACAAGTC 376
Score = 425 bits (230), Expect = 3e-118
Identities = 249/258 (97%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 1 AAAATATTTGTTTAAAGAAAAGTACATTTAGTTTATATTGAAAAAGAAGAACAATAGGCT 60
|||||||||||||||||||||||| | |||||| |||||||||||||||| | |||||||
Sbjct 1089 AAAATATTTGTTTAAAGAAAAGTATAGTTAGTTGATATTGAAAAAGAAGAGC-ATAGGCT 1031
Query 61 TTTAATTCTATAAGAGAGAGTACTTTATAATGAA-GAAGGCACTAACCTTCCTTCCCTTG 119
|||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||
Sbjct 1030 TTTAATTCTATAAGAGAGTGTACTTTATAATGAAGGGAGGCACTAACCTTCCTTCCCTTG 971
Query 120 ATATATATCTGCAATGAGCTTTGTCTGGTAGTGCTTCAATTGAGTGAAAACAATGGTGCT 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 ATATATATCTGCAATGAGCTTTGTCTGGTAGTGCTTCAATTGAGTGAAAACAATGGTGCT 911
Query 180 AGGGTTGCCATGTGGTGAAACTTACTCCTTCTCTTCAATTATATGAGGCTTCCTATAGGC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 AGGGTTGCCATGTGGTGAAACTTACTCCTTCTCTTCAATTATATGAGGCTTCCTATAGGC 851
Query 240 TCCGGTTTTTCTTGATAC 257
||||| ||||||||||||
Sbjct 850 TCCGGCTTTTCTTGATAC 833
Score = 274 bits (148), Expect = 1e-72
Identities = 150/151 (99%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 912 CAATCGTGTTGTTTGCCTTTAATAAGCCATGTGTAGGTAGTTGCATTGTTTTCTTTTGCC 971
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 CAATCGTGTTGTTTGCCTTTAATAAGCCATGTGTAGGTAGTTGCATTGTTTTCTTTTGCC 317
Query 972 GGAATATGtttttttGTAGAAGCTGTCCTAAATAAGTTATCTGCACGGTTCTCCGTTGGA 1031
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 316 GGAATATGTTTTTTTGTAGAAGCTGTCCCAAATAAGTTATCTGCACGGTTCTCCGTTGGA 257
Query 1032 ACCCTGTTATATAATATGTACCTTGTTCTTC 1062
|||||||||||||||||||||||||||||||
Sbjct 256 ACCCTGTTATATAATATGTACCTTGTTCTTC 226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5