BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472800
Length=3235
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26170.1 | Symbols: | ARM repeat superfamily protein | chr1... 5099 0.0
AT1G24822.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 172 1e-41
AT1G25097.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 172 1e-41
AT1G24938.1 | Symbols: | transposable element gene | chr1:8789... 171 5e-41
> AT1G26170.1 | Symbols: | ARM repeat superfamily protein | chr1:9047433-9054589
REVERSE LENGTH=3326
Length=3326
Score = 5099 bits (2761), Expect = 0.0
Identities = 3093/3247 (95%), Gaps = 48/3247 (1%)
Strand=Plus/Plus
Query 1 TTTCTACTGTTTCTCCGACATCCTCCTATAGGAAGCAAAGGGACAAGCGGGAATTTGAAA 60
|||||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 16 TTTCTACTGTCTCTCCGACATCCTCCTAT----ACCAAAGGGACAAGCGGGAATTTGAAA 71
Query 61 ATTGA-GGAAGCAAAAACAATTTTTC-AACACTCAATTTCTTGATCCCATCTGGAATTTG 118
||||| |||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |
Sbjct 72 ATTGAGGGAAGCTAAAACAA-TTTTCAAACACTCAATTTCTTGATCCCATCTGGAATTGG 130
Query 119 ATTCCGTCGATTATTCTCTCAATGGTGGTGGACCAAGATCAGCAATGGCTGCTGGGTTGC 178
||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 131 ATTCCATCGATTAATCTCTCAATGGTGGTGGACCAAGATCAGCAATGGCTGCTCGGTTGC 190
Query 179 TTATCAGCAAGTCTCGACCCTAACCAGAACGTTCGTTCTTTCGCTGAGACTTCTCTCAAT 238
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 191 TTATCAGCAAGTCTTGACCCTAACCAGAACGTTCGTTCTTTCGCTGAGACCTCTCTCAAT 250
Query 239 CAGGCTTCTCTTCAACCAGGGTTTGGCAGTGCATTGTGCAGAGTTGCTGCTAACAAAGAC 298
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 251 CAGGCTTCTCTTCAACCAGGGTTTGGGAGTGCATTGTGCAGAGTTGCTGCTAACAAAGAC 310
Query 299 CTCTCATTGGGATTGC--C---T-GCT---GTACTGTTAAAGCAGTTCATTAAAAAACAT 349
||||| |||||||||| | | ||| |||||||||||||||||||||||||| |||
Sbjct 311 CTCTCTTTGGGATTGCGTCAATTAGCTGCGGTACTGTTAAAGCAGTTCATTAAAAAGCAT 370
Query 350 TGGCGAGAGAATGAGGAGGCTTTTGAATATCCACTTGTCTCAAATGAGGAAAAGGCTCTT 409
||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 371 TGGCGAGAGAACGAGGAGGCTTTTGAATATCCTCTTGTCTCAAGTGAGGAAAAGGCTCTT 430
Query 410 ATTCGAGGACAATTGTTGGGCTCACTTGATGACTCTCATAGAAAAATCTGTACGGCTATT 469
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 ATTCGAGGACAACTGTTGGGCTCACTTGATGACTCTCATAGAAAAATCTGTACGGCTATT 490
Query 470 AGTATGGACATATCGTCAATTGCCACATATGATTGGCCAGAAGAGTGGCCTGAACTAGTC 529
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 491 AGTATGGACATATCGTCAATTGCCACATATGATTGGCCAGAAGAGTGGCCTGAGCTAGTT 550
Query 530 CCCTTTCTTCTCAAGTTAATTAGCGATCCAAGTAACACTAATGGAGTTCATGGAGCTTTG 589
|| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 CCTTTTCTCCTGAAGTTGATTAGCGATCCAAGTAACACTAATGGAGTTCATGGAGCTTTG 610
Query 590 AGGTGTTTGGCTCTTCTCTCTGGTGAATTGGATGACAAAGAGGTTCCTACGCTGGTACCT 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 AGGTGTTTGGCTCTTCTCTCTGGTGAATTGGATGACAAAGAGGTTCCTACGCTGGTACCT 670
Query 650 GTGTTGTTTCCTTGCTTGCATGCAGTCGTATCCTCTCCTCAGAGCTATGACAAGTATATT 709
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 671 GTGTTGTTTCCCTGCTTGCATGCAGTCGTATCTTCTCCTCAGAGCTATGACAAGTATATT 730
Query 710 CGAGGAAAAGCCCTTTCAATTGTTTATTCATGTATATATGTTCTTGGAGCAATGAGCGGT 769
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CGAGGAAAAGCCCTTACAATTGTTTATTCATGTATATATGTTCTTGGAGCAATGAGCGGT 790
Query 770 GTGTACAAGATGGAAACTACTACTTTGGTGACACCTGTGCTTAAAGTTTGGATGAATCAG 829
|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 791 GTGTACAAGACGGAAACTACTACTTTGGTGACGCCTGTGCTTAAGGTTTGGATGAATCAG 850
Query 830 TTTTCACTTATATTGGAACATCCTGTGCAACGCGAGGATCCTGATGATTGGAGTTTAAGA 889
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TTTTCACTTATATTGGAGCATCCTGTGCAACGCGAGGATCCTGATGATTGGAGTTTAAGA 910
Query 890 ATGGAGGTCTTGAAGTGCTTAAATCAGTTTGTACAGAATTTCCCATCTCTCATCGAAAGT 949
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 911 ATGGAGGTCTTGAAGTGCCTAAATCAGTTTGTACAGAATTTCCCATCTCTCATCGAAAGT 970
Query 950 GAATTGATGGCTATTATGAGGCCATTGTGGCACACATTTGAGTCATCTCTACAAGTTTAT 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 GAATTGATGGCTATTATGAGGCCATTGTGGCACACATTTGAGTCATCTCTACAAGTTTAT 1030
Query 1010 CTTCGATCGTCAATTGATGGTGCTGAAGATTCATATGATGGAAGATATGATTCAGATGGT 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 CTTCGATCGTCAATTGATGGTGCTGAAGATTCATATGATGGAAGATATGATTCAGATGGT 1090
Query 1070 GAAGAAAAGAGTCTTGACACTTTTGTCATCCAGCTATTTGAGTTTCTGTCAACTATCGTT 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 GAAGAAAAGAGTCTTGACACTTTTGTCATCCAGCTATTTGAGTTTCTGTCAACTATCGTT 1150
Query 1130 AGCAGTAGAAGACTGGCAAAGACCATTGCCGGTAATGTCAGAGAGTTGGTATATCAAACT 1189
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 AGCAGTAGAAGACTGTCAAAGACCATTGCCGGTAATGTCAGAGAGTTGGTATATCAAACC 1210
Query 1190 GTCGCTTTCCTGCAGATTACAGAACAACAGGTGCATACTTGGTCCATGGATGTAAATCAG 1249
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1211 GTCGCTTTCCTGCAGATTACAGAACAACAGGTTCATACTTGGTCCATGGATGTAAATCAG 1270
Query 1250 TTTGTAGCCGATGAAGATGAGGGTAGCTACAGTTGTCGTATATCAGGAATTCTTTTGTTG 1309
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1271 TTTGTAGCCGATGAAGATGAAGGTAGCTACAGTTGTCGTATATCAGGAATACTTTTGTTG 1330
Query 1310 GAGGAAGTTATCAATGCTTTTGGTAGCGAAGGGATCAATTCTGTTGTAGATGCTACCGGA 1369
||||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||
Sbjct 1331 GAGGAAGTTATCAATACTTTTGGTAGTGAAGGGATCAATGCTGTTGTAGATGCTGCCGGA 1390
Query 1370 AAACGGTTCCAAGAGTCTCAAGGTGAAAAGGCAGCTGGTTCTCCGTCCTGGTGGAGAATA 1429
||||| ||||||||||||||| ||||||| ||||| |||||| ||||||||||||| ||
Sbjct 1391 AAACGATTCCAAGAGTCTCAACGTGAAAATTCAGCTAGTTCTCTGTCCTGGTGGAGATTA 1450
Query 1430 AGAGAAGCTGTGCTCTTTGCTTTGGCTTCTCTTGCTGATCAACTTGTTGAAGCTGAGGAC 1489
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1451 AGAGAAGCTGTGCTCTTTACTTTGGCTTCTCTTTCTGATCAACTTGTTGAAGCTGAGGAC 1510
Query 1490 TTGAGAA-CTGACCCTGCCAATTTAGCTAAATTTGTTGAGCAATTGATAATGGAAGATAC 1548
||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1511 TTGAGAATC-GACCCTGCCAATTTAGCTAAATTTATTGAGCAATTGATAATGGAAGATAC 1569
Query 1549 TGGAATTGGGTATCATGAATGTCCTTTCCTTTATGCCCGCATATTTACAGCCGTTGCAAA 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1570 TGGAATTGGGTATCATGAATGTCCTTTCCTTTATGCCCGCATATTTACAGCCGTTGCTAA 1629
Query 1609 GTTCTCTTCTGTGATCAACCCTGGAATCCTTGAGCACTTCCTCAATGCTGCTGTTAGAGC 1668
||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 1630 GTTCTCTTCTGTGATCAACGCGGGAATCCTTGAGCACTTCCTCAATGCTGCAGTTAGAGC 1689
Query 1669 TATAACCATGGACGTGCCGCCACCTGTAAAAGTAGGCGCATGTCGGGCACTTTTGCAGCT 1728
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1690 TATAACCATGGACGTGCCACCACCTGTAAAAGTAGGCGCATGTCGGGCACTTTTGCAGCT 1749
Query 1729 CCTATCCGATATGAACAGTTCAGTTATTCTGCCTCAGATCATGAGTTTATTCTCATCTCT 1788
|||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1750 CCTACCCGATATGAACAGTTCGGTTATTCTGCCTCAGATCATGAATTTATTCTCATCTCT 1809
Query 1789 CACTGATCTTCTCCATCAGGCTTCAGATGAAACTTTGGTTTTGGTACTTGAAACTCTTCA 1848
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1810 CACTGATCTTCTCCGTCAGGCTACAGATGAAACTTTGGTTTTGGTACTTGAAACTCTTCA 1869
Query 1849 ACAAGCAATTAAAGCTGGCCATGAAGCATCAGCTTCAATAGAGTCGATTATTTCTCCAGT 1908
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1870 ACAAGCAATTAAAGCTGGCCATGAAGCATCAGCTTCAATAGAGTCGATTATCTCTCCAGT 1929
Query 1909 GATTCTTAATGTGTGGGTGGCACATGTTTCAGATCCCTTTATGAGTATCGATGTAATTGA 1968
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1930 GATTCTTAATGTGTGGGTGGCACATATTTCAGATCCCTTTATGAGTATCGATGTAATTGA 1989
Query 1969 CGTCCTGGAGGCAATAAAGAATTCGCCTGGCTGCCTTCATCCACTGACATCAAGGATTTT 2028
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1990 CGTCCTGGAGGCAATAAAGAATTCGCCTGGCTGCCTTCATCCATTGACATCAAGGATTTT 2049
Query 2029 ACCATTCATTGGGCCAATTTTAAATAAGCCACATCAGCAGCCTGCAGGACTAGCGAGTGG 2088
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2050 ACCATTCATTGGACCAATTTTAAATAAGCCACATCAGCAGCCTGAAGGACTAGCGAGTGG 2109
Query 2089 ATCCTTGGATCTTTTAACTATGCTTCTTAAGGCAATATTTCTCGGTGCCCCAAGTGATAT 2148
|||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 2110 ATCCTTGGATCTTTTAACTATGCTTCTTAAGG-----------G-TGCCCCAAGTGATAT 2157
Query 2149 AGTGAAAACTGCATATGAATTTTGCTTTGATGCTGTCATTCGTATCATACTCCACAGTGA 2208
|||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||
Sbjct 2158 AGTGAAAACTGCATATGACTTTTGCTTTGCTGCTGTCATTCGTATCGTACTCCACAGTGA 2217
Query 2209 GGATCATGGTGAACTACAGAATGCTACAGAATGTCTGGCAGCTTTTATATCTAGTGGAAG 2268
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 2218 GGATCATGGTGAACTACAGAATGCTACAGAATGCCTGGCAGCTTTTATATCTAGTGGTAG 2277
Query 2269 ACTAGAGTTGCTCACTTGGAGTGGTGATCCCAGTTTTACCATGAGAAGTTTGCTTGATGT 2328
|| |||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 2278 ACAAGAGTTGCTCACATGGAGTGGTGATCCCGGTTTTACTATGAGAAGTTTGCTTGATGC 2337
Query 2329 AACTTCTAGGCTTCTTAACCCTGATCTGGAATGTTCTGGATCTCTGTTTGCTGGGAAGTA 2388
|||||||||||||| ||||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 2338 GACTTCTAGGCTTCTCAACCCTGATCTGGAAGGTTCAGGATCTCTCTTTGCTGGGAAGTA 2397
Query 2389 CATTCTGCAGCTTATCTTGCATCTTCCATCAGAGATGGCACCCCATGTCCAAGATCTGGT 2448
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2398 CATTCTGCAGCTTATCTTGCATCTTCCGTCAGAGATGGCACCCCATGTCCAGGATCTGGT 2457
Query 2449 TGCTGCTCTTGTAAGACGGTTGCAGTCTGCTGATATTTCGGCTTTAAAAGGCTCATTGCT 2508
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 2458 TGCTGCTCTTGTAAGACGGTTGCAGTCTGCTGAAATTTTGGCTTTAAAAGGCTCATTGCT 2517
Query 2509 GCTGATTTTTGCCAGACTGGTCCATATGAGTTTTCCGAATGTCGTTCAATTTATCAATCT 2568
||||||||||||||| |||| |||||||||| ||||||||||| ||| |||||||||||
Sbjct 2518 ACTGATTTTTGCCAGATTGGTTCATATGAGTTATCCGAATGTCGATCAGTTTATCAATCT 2577
Query 2569 TCTTGTTAGCATACCCGCTGAAGGCCATGAAAATTCCTTTACCTATGTTATGACAGAATG 2628
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2578 GCTTGTTAGCATACCCGCTGATGGCCATGAAAATTCCTTTACATATGTTATGACAGAATG 2637
Query 2629 GACTAAACAACAAGGCAAGCATCTCTATCCTTGGGAGATACAATCCGCATATCAAATCAA 2688
||||||||||||||| | | |||||||||||||||||||||||||
Sbjct 2638 GACTAAACAACAAGG---G-------------G--AGATACAATCCGCATATCAAATCAA 2679
Query 2689 AGTCACAACTTCAGCTCTGGCCTTGCTGCTGTCCACTAGACATTCTGAATTTGCGAAGGT 2748
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2680 AGTCACAACTTCAGCTCTGGCCTTGCTACTGTCCACTAGACATTCTGAATTTGCGAAGGT 2739
Query 2749 CAATGTCCCAGGCAGTCCGATTCAGTCCAATGGTGGCATAACCACTCGCTCAAAAGCTAG 2808
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 2740 CAATGTCCCAGGCAGTCCAATTCAGTCCAATGGTGGCATAACTACTCGCTCAAAAGCTAG 2799
Query 2809 ATCTGCTCCTGAACAATGGACCATTATCTCTCTACCCATGAAGATACTGGCTTTACTAGC 2868
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2800 ATCTGCTCCTGAACAATGGACCATTATCCCTCTACCCATGAAGATACTGGCTTTACTAGC 2859
Query 2869 TGATACATTGATTGAAATGCAAGAGCAAGTTTTGAGTAGTGAAGATGAGGATAGCGAATG 2928
|||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||
Sbjct 2860 TGATACATTGATTGAAATTCAAGAGCAAGTTTTGAGTAATGAAGACGAGGATAGCGAATG 2919
Query 2929 GGAAGAAGTGCATGAAGGAGACGCTAAAACTGAGAAAGACTTGCTACGTTCAGCTGGTGC 2988
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 2920 GGAAGAAGTGCATGAAGGAGACGCTAAAGCTGAGAAAGACTTGCTACGTTCAGCTGGTAC 2979
Query 2989 CTCCCAATTCAGCAAACCCACATATGACCAACTTGAAGCAATGGCTCGTTTCGAGAACCA 3048
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2980 CTCCCAATTCAGCAAACCCACATATGACCAACTTGAAGCAATGGCTCGTTTTGAGAACCA 3039
Query 3049 AGACGATGAGGTTGATGACCACCTACTTGGTACCGACCCCCTTAATGAGATTAATCTGGC 3108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3040 AGACGATGAGGTTGATGACCACCTACTTGGTACCGACCCCCTTAATGAGATTAATCTGGC 3099
Query 3109 AAGTTACGTGGCTGATTTTTTGTTGAAGTTTTCGAGTGAAGATCGGCCTCTGTTTGATAA 3168
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3100 AAGTTATGTGGCTGATTTTTTGTTGAAGTTTTCGAGTGAAGATCGGCCTCTTTTTGATAA 3159
Query 3169 TCTTTGCCAGGGCTTAACAAATGCACAAAGAAATGTGATCCATATGGCACTGAACCGCTA 3228
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 3160 TCTTTGCCAGGGCTTAACAAATGCGCAAAGAAACGTGATCCATATGGCACTGAACCGCTA 3219
Query 3229 GGCTTGG 3235
|||||||
Sbjct 3220 GGCTTGG 3226
> AT1G24822.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G25097.1);
Has 12 Blast hits to 12 proteins in 1 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8774997-8777882
REVERSE LENGTH=651
Length=651
Score = 172 bits (93), Expect = 1e-41
Identities = 116/127 (91%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 967 GAGGCCATTGTGGCACACATTTGAGTCATCTCTACAAGTTTATCTTCGATCGTCAATTGA 1026
||||||||||||| |||| ||||||||||||||||||| | |||||||||||||||| |
Sbjct 401 GAGGCCATTGTGGTACACGTTTGAGTCATCTCTACAAGCCTGTCTTCGATCGTCAATTCA 460
Query 1027 TGGTGCTGAAGATTCATATGATGGAAGATATGATTCA-GATGGTGAAGAAAAGAGTCTTG 1085
| |||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 461 AGATGCTGAAGATTCATATGATGGAAGATATGATTAAAGATGGTGAAGAGAAGAGTCTTG 520
Query 1086 ACACTTT 1092
|||||||
Sbjct 521 ACACTTT 527
> AT1G25097.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G24822.1);
Has 12 Blast hits to 12 proteins in 1 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8811905-8814788
REVERSE LENGTH=651
Length=651
Score = 172 bits (93), Expect = 1e-41
Identities = 116/127 (91%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 967 GAGGCCATTGTGGCACACATTTGAGTCATCTCTACAAGTTTATCTTCGATCGTCAATTGA 1026
||||||||||||| |||| ||||||||||||||||||| | |||||||||||||||| |
Sbjct 401 GAGGCCATTGTGGTACACGTTTGAGTCATCTCTACAAGCCTGTCTTCGATCGTCAATTCA 460
Query 1027 TGGTGCTGAAGATTCATATGATGGAAGATATGATTCA-GATGGTGAAGAAAAGAGTCTTG 1085
| |||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 461 AGATGCTGAAGATTCATATGATGGAAGATATGATTAAAGATGGTGAAGAGAAGAGTCTTG 520
Query 1086 ACACTTT 1092
|||||||
Sbjct 521 ACACTTT 527
> AT1G24938.1 | Symbols: | transposable element gene | chr1:8789376-8792080
REVERSE LENGTH=954
Length=954
Score = 171 bits (92), Expect = 5e-41
Identities = 130/148 (88%), Gaps = 4/148 (3%)
Strand=Plus/Plus
Query 947 AGTGAATTGATGGCTATTA-TGAGGCCATTGTGGCACACATTTGAGTCATCTCTACAAGT 1005
||| |||| | || | ||| || ||||||||||| |||| |||||||||||||||||||
Sbjct 685 AGTAAATT-AGGGTTTTTACTG-GGCCATTGTGGTACACGTTTGAGTCATCTCTACAAGC 742
Query 1006 TTATCTTCGATCGTCAATTGATGGTGCTGAAGATTCATATGATGGAAGATATGATTCA-G 1064
| |||||||||||||||| | | |||||||||||||||||||||||||||||||| | |
Sbjct 743 CTGTCTTCGATCGTCAATTCAAGATGCTGAAGATTCATATGATGGAAGATATGATTAAAG 802
Query 1065 ATGGTGAAGAAAAGAGTCTTGACACTTT 1092
|||||||||| |||||||||||||||||
Sbjct 803 ATGGTGAAGAGAAGAGTCTTGACACTTT 830
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 160935553144
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5