BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472801
Length=1087
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26160.1 | Symbols: | Metal-dependent phosphohydrolase | ch... 1380 0.0
> AT1G26160.1 | Symbols: | Metal-dependent phosphohydrolase |
chr1:9044441-9046979 REVERSE LENGTH=1154
Length=1154
Score = 1380 bits (747), Expect = 0.0
Identities = 870/926 (94%), Gaps = 22/926 (2%)
Strand=Plus/Plus
Query 1 tttttttt-ttCTGCATAGAATCAATCGATCATCTATGGCGGTGATTAGTCCAGCTACAC 59
|||||||| || ||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 3 TTTTTTTTGTT-TGCATAGAATCGA--GATCATCTATGGCGGTGATTAGTCCAGCTACAC 59
Query 60 GTTTCGCGCCGCCGCTGAACCGGCCTTTTCACCACCGATC-GTCACTAGTTTCGCTTCAT 118
||||||| ||||||||||||||||||||||||| |||||| | ||| | ||| |||||
Sbjct 60 GTTTCGCACCGCCGCTGAACCGGCCTTTTCACCGCCGATCAAT-ACTTGCCTCGTTTCAT 118
Query 119 TGC-TCCTCTAGGAACTTCCTCTTCCTCGGAAAACTCACTCCGAGCTCGACGATCGTCGC 177
| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 119 T-CTTCCTCTAGGAACTTCCTCTTCCTCGGAAAACCCACTCCGAGCTCGACGATCGTTTC 177
Query 178 CGTCCGGTGCCAGAAACCTGTTTCCGACGGGATTAGCTCTATGGAATCCATGAATCA--- 234
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 CGTCCGGTGCCAGAAACCTGTTTCCGACGGGGTTAGCTCTATGGAATCCATGAATCACGT 237
Query 235 TG--T-TTCA------TCTTCGATCGATTTCCTAACGTTGTGTCATCGGCTCAAGACAAC 285
|| | |||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 TGCATCTTCAGTTTCGTCTTCGATCGATTTCCTAACGTTGTGTCATCGTCTCAAGACAAC 297
Query 286 AAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCAATTGCTGATCATAT 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AAAGAGAAAAGGGTGGATTAATCAGGGGATAAATGGACCTGAATCAATTGCTGATCATAT 357
Query 346 GTACCGTATGGCTCTAATGGCACTTATTGCTGGTGATCTTACAGGAGTTGACAGAGAAAG 405
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 358 GTACCGTATGGCTCTAATGGCACTTATAGCTGGTGATCTTACTGGAGTTGACAGAGAAAG 417
Query 406 GTGTATCAAAATGGCAATTGTGCATGATATCGCTGAAGCTATTGTTGGAGATATTACCCC 465
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTGTATAAAAATGGCAATTGTGCATGATATCGCTGAAGCTATTGTTGGAGATATTACCCC 477
Query 466 ATCTGATGGTGTGCCTAAGGAAGAAAAGAGTAGGAGGGAGAAAGCAGCTTTAAAAGAGAT 525
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 478 ATCTGATGGTGTGCCTAAGGAAGAAAAGAGTAGGAGGGAGACAGCAGCTTTAAAAGAAAT 537
Query 526 GTGTGAGGTTCTGGGTGGAGGCCTCAGAGCGGAGGAGATCACAGAACTTTGGCTGGAGTA 585
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTGTGAGGTTCTTGGTGGAGGCCTCAGAGCGGAGGAGATCACAGAACTTTGGCTGGAGTA 597
Query 586 TGAGAACAATGCTTCTTTAGAAGCAAATATTGTAAAAGACTTTGATAAGGTTGAGATGAT 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGAGAACAATGCTTCTTTAGAAGCAAATATTGTAAAAGACTTTGATAAGGTTGAGATGAT 657
Query 646 TCTCCAGGCACTAGAATATGAAGCCGAACACGGGAAAGTGCTCGATGAGTTTTTCATATC 705
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 658 TCTCCAGGCGCTAGAATATGAAGCTGAACACGGGAAAGTGCTCGACGAGTTTTTCATATC 717
Query 706 AACAGCAGGCAAGTTTCAAACCGAAATTGGAAAGAGCTGGGCCGCTGAGATCAACGCTAG 765
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 718 AACAGCAGGCAAGTTTCAAACAGAAATTGGAAAAAGCTGGGCTGCTGAGATCAACGCTAG 777
Query 766 GAGAAAAAGCCAATTGATAAACAGACAGAGATAGTAAAGTCCAGTTGCCTCATACCTTCA 825
||||||||||||||||| |||||| ||||||||||||| ||||||||| |||||||||||
Sbjct 778 GAGAAAAAGCCAATTGACAAACAGGCAGAGATAGTAAAATCCAGTTGCATCATACCTTCA 837
Query 826 ATGT-CCTTCAACTATCAACACTAGAATCTTGGAAACTAAGCAGACTCCTCTTGAAACAA 884
|| | ||| |||||||||||| |||||||| |||||||||||||||||||| |||| |||
Sbjct 838 ATCTTCCT-CAACTATCAACAGTAGAATCTCGGAAACTAAGCAGACTCCTCATGAACCAA 896
Query 885 AAGGTACAAGCTTCTAGTGAAAtttt 910
||||||||||||||||||||||||||
Sbjct 897 AAGGTACAAGCTTCTAGTGAAATTTT 922
Score = 150 bits (81), Expect = 2e-35
Identities = 137/162 (85%), Gaps = 12/162 (7%)
Strand=Plus/Plus
Query 908 tttttttAACTT-CCCTTTTGGTTGCTAGTCAAAGTAGGACAAA-AC--TTTTTACTGAG 963
|||||||||||| ||||||||||| ||||| ||||| || ||| | ||||| ||||
Sbjct 956 TTTTTTTAACTTCCCCTTTTGGTTACTAGTTGAAGTA-GA-AAATGCTTTTTTTTTTGAG 1013
Query 964 GGAAGTGGATCATAGTTTCTTATGAAAATCTTAA-TTCGAGGTTCCTAATCT-ACTTCTG 1021
|||| ||||| |||||||||||||||||| || ||||||||||||||| | | || ||
Sbjct 1014 AAAAGT-GATCAAAGTTTCTTATGAAAATCTGAAGTTCGAGGTTCCTAATATGA-TTATG 1071
Query 1022 ATGTAGTTC-CAACCCAATTGAAACATATCACACACTCTTGT 1062
||||| || ||||||||||||||||||||||||||||||||
Sbjct 1072 TTGTAG-TCACAACCCAATTGAAACATATCACACACTCTTGT 1112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53262778245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5