BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472806
Length=2250
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26110.1 | Symbols: DCP5 | decapping 5 | chr1:9024345-902778... 3445 0.0
> AT1G26110.1 | Symbols: DCP5 | decapping 5 | chr1:9024345-9027786
REVERSE LENGTH=2337
Length=2337
Score = 3445 bits (1865), Expect = 0.0
Identities = 2165/2301 (94%), Gaps = 55/2301 (2%)
Strand=Plus/Plus
Query 1 GGAATGGATAATAAAAAAGAGATGCTCGATCTCCCCAAATTAGAGTAAACCCTAATTGT- 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GGAATGGATAATAAAAAAGAGATGCTCGATCTCCCCAAATTAGAGTAAACCCTAATTGTG 63
Query 60 T-TCTGTAG------CT-T-tctctctctctctctctcGC---GAAGAAGAAGAAGAAGG 107
| ||||||| || | |||||||||||||||||||| |||||||||||||||||
Sbjct 64 TATCTGTAGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCGCGAAGAAGAAGAAGAAGAAGG 123
Query 108 AGATCAAGGAACTCGAA----gtgtgtgtgtgtTTGCCTTCTCTTGACTTCTAGtttttt 163
||||||||||||||||| ||||||||||||||||||||||||| ||| ||| |||||
Sbjct 124 AGATCAAGGAACTCGAAGTGTGTGTGTGTGTGTTTGCCTTCTCTTGTCTTTTAG-TTTTT 182
Query 164 tCTCTCTTTGGCTGTGATTTCGTCGGCGAAGAGAGACATAGATCGGATATGGCGGCTGAT 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 TCTCTCTTTGGCTGTGATTTCGTCGGCGAAGAGAGACATAGATCGGATATGGCGGCTGAT 242
Query 224 AATACGGGTGCGAAATCCAGCTCCGCTGCGGATTCTTACGTTGGGAGCTTGATTAGTTTG 283
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 AATACGGGTTCGAAATCGAGCTCCGCTGCGGATTCTTACGTTGGGAGCTTGATTAGTTTG 302
Query 284 ACATCTAAGAGCGAGATCAGATACGAAGGGATCCTTTACAATATTAATACAGATGAATCC 343
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 ACATCTAAGAGTGAGATCAGATACGAAGGGATCCTTTACAATATTAATACAGATGAATCC 362
Query 344 AGTATCGGACTTCAAAACGTTCGATCATTTGGAACTGAAGGAAGGAAAAAAGATGGTCCG 403
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AGTATCGGACTTCAAAACGTTCGATCATTTGGAACTGAAGGAAGGAAAAAAGATGGTCCA 422
Query 404 CAAGTTCCTCCTAGTGACAAAGTTTATGAGTACATATTGTTCCGTGGAACTGATATCAAG 463
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 423 CAAGTTCCTCCAAGTGACAAAGTTTACGAGTACATATTGTTCCGTGGAACTGATATCAAG 482
Query 464 GATTTGCAAGTCAAAGCTTCTCCACCAGTCCAGCCTCCTCCACCTACTATAAATAATGAC 523
||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||
Sbjct 483 GATTTGCAAGTCAAAGCTTCTCCACCAGTTCAGCCTCCTGCATCTACTATAAATAATGAC 542
Query 524 CCTGCTATAATTCAGTCCCACTACCCTAGCCCGATGCCAACATCTGGTAGCTTGCCTTCT 583
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CCTGCTATAATTCAGTCTCACTACCCTAGCCCGATGCCAACATCTGGTAGCTTGCCTTCT 602
Query 584 ACTGCGAGCGGGTCACTGCCTGACATTAGTTCTCATAATGGACAACCT-G-------GG- 634
||||||||||||||||| |||||||||||||||||||||||||||||| | ||
Sbjct 603 ACTGCGAGCGGGTCACTACCTGACATTAGTTCTCATAATGGACAACCTGGACAACATGGA 662
Query 635 ATGGGATTTCAAAACGCAATGCCTTTGTATCAGCCTGGTGGAAATCTTGGTTCCTGGGGA 694
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 663 ATGGGATTTCAAAACGCAATGCCTTTGTATCAGCCTGGTGGAAATCTTGGTTCATGGGGA 722
Query 695 GCTTCACCACAACCACCAATGTATTGGCAAGGTTTCTACACCCCACCTCCCAATGGCCTT 754
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GCGTCACCACAACCACCAATGTATTGGCAAGGTTTCTACACCCCACCTCCCAATGGCCTT 782
Query 755 CCCCAATTGCATCAACAGTCTCTGATTCGACCCCCTCATGGGCTGCCAATGCCCAATTCT 814
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 783 CCCCAATTGCATCAGCAGTCTCTGATTCGACCCCCTCATGGGCTGCCAATGCCCAACTCT 842
Query 815 CTTCAGCAACCCCTGCAATATCCTAACTTTAATA--CC-CCTCCACCTACTGGTTCATCA 871
|||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 843 CTTCAGCAACCCCTGCAATATCCTAACTTTAATACCCCTCCTCCACCTACTGGGTCATCA 902
Query 872 AATTTGCAGGGTTCAAGCTTGCCAGAAGCACCCTCTTCATTGTTTCCTTTTAGTACTAGC 931
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 903 TCTTTGCAGGGGTCAAGCTTGCCAGAAGCACCCTCTTCATTGTTTCCTTTTAGTACCAGT 962
Query 932 TCTCAAATCCTAGCACCTAGTTCATTGCCTTTCCCTGGTCTACCACCTGTGACGTTGTCG 991
|||||||| |||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 963 TCTCAAATGTTAGCTCCTAGTTCATTGCCTTTCCCTGGTCTACCACCTGTGACGCTCTCG 1022
Query 992 TCTAGCCTGCAATCTACACTGCAATCAGCACCATCTCCTTCACTAGCTTCAGAGATGGCA 1051
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TCTAGCCTGCAGTCTACACTGCAATCAGCACCATCTCCTTCACTAGCTTCAGAGATGGCA 1082
Query 1052 CCTCCGTTGCTGTCAAACAAAGCTCCTATTACTGCGCCTCCTACCCTACCTCAGGATACT 1111
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1083 CCTCCGTTGCTGTCAAACAAAGCTCCTATTACTGCTCCTCCTACCCTACCTCAGGATACT 1142
Query 1112 AATTTGCTTCCCTTTTCTCTATCTACTGCGAGAGCCACAGAAGCAAGTGCTG-CTCTTCC 1170
||||||||| | ||||||||||||||| |||||||||||||||||||| ||| | |||||
Sbjct 1143 AATTTGCTTTCGTTTTCTCTATCTACTACGAGAGCCACAGAAGCAAGTACTGGC-CTTCC 1201
Query 1171 ACTGTCTAACAAGCCTAGTGTAGTTACTGGTCCAATTTCTCTGCCGCAGACAACACCATT 1230
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1202 ACTGTCTAACAAGCCTAGTGTAGTAACTGGTCCAATTTCTCCGCCGCAGACAACACCATT 1261
Query 1231 GACATCTGCTCCTGTTGCGGGAGTTTCTAGTTCCATTAGCCAAGATAAGCCAAAACCTTT 1290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 AACATCTGCTCCTGTTGCGGGAGTTTCTAGTTCCATTAGCCAAGATAAGCCAAAACCTTT 1321
Query 1291 GTTGGTTACTCCTGGCCAACTGCTGCAGTCTGGATCTTCTGCAGTCTCTTTGTCCCCACC 1350
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GTTGGTTACTCCTGGTCAACTGCTGCAGTCTGGATCTTCTGCAGTCTCTTTGTCCCCACC 1381
Query 1351 CTCTACAAATGCGGATAAAGATGTTGAGGTCGTTCAAGTATCATCATCAGCTGCGTTGGA 1410
||| |||||||| ||||||||||||||||| ||||||||||| |||||||||| ||||||
Sbjct 1382 CTCGACAAATGCTGATAAAGATGTTGAGGTGGTTCAAGTATCGTCATCAGCTGGGTTGGA 1441
Query 1411 ACAATCTGTTCCAGTTACATCTGAAGCCCAACCTCCAATACTGCCATTGCCTTCCTCTGC 1470
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1442 ACAATCTGTTCCAGTTACATCCGAAGCCCAACCTCCAATACTGCCATTGCCTTCCTCTGC 1501
Query 1471 AAGGCCAACTCAGAAGCCAAACGGGCATTCTTTCCCAAATCATAATGGTTACAGGGGACG 1530
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 AAGACCAACTCAGAAGCCAAACGGGCATTCTTTCCCAAATCATAATGGTTACAGGGGACG 1561
Query 1531 TGGAAGAGGAAGAGGAAGAGGAGCAGGGAGATCACACCAGGTAATGAAGTTCACTGAAGA 1590
|||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1562 TGGAAGAGGACGAGGAAGAGGAGCAGGGAGATCACACCAAGTAATGAAATTCACTGAAGA 1621
Query 1591 TTTTGATTTCACAGCAATGAACGAAAAGTTCAATAAGGATGAAGTATGGGGTCATCTTGG 1650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1622 TTTTGATTTCACAGCAATGAACGAAAAGTTCAATAAGGATGAAGTATGGGGTCATCTTGG 1681
Query 1651 GAAGAGTACCACCTTAGATGGTGATGAAGATGATGATTCCCCAATTGTAGATGAGGCTGA 1710
||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1682 GAAGAGTACTACCTTAGATGGTGATGAAGATGATGATTCCCCGACTGTAGATGAGGCTGA 1741
Query 1711 GCTTCCTAAGATCGAGGCCAAACCTGTTTACAACAAAGACGACTTTTTCGATAGCCTCTC 1770
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1742 GCTTCCTAAGATCGAGGCCAAACCTGTTTACAACAAAGATGACTTTTTCGATAGCCTATC 1801
Query 1771 ATCAAACACCATTGACCGAGAGTCCCAAAATGCAAGGCCTAGGTTCTCAGAGCAACGGAA 1830
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1802 ATCAAACACCATTGACCGAGAGTCCCAAAATTCAAGGCCTAGGTTCTCAGAGCAACGGAA 1861
Query 1831 ACTAGATACTGAGACATTTGGTGAGTTCTCGAGATTCAGAGGAGGTCGAGGAGGGCGTGG 1890
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1862 ACTAGATACTGAGACATTTGGTGAATTCTCGAGATTCCGAGGAGGTCGAGGAGGGCGTGG 1921
Query 1891 TGGTTATGGTCGAAAC---GGTTATTCACgtggcggttatggtgggcgtgggtatggcgg 1947
||||||||| |||||| ||||| |||||||| |||||||| |||||||| ||||||||
Sbjct 1922 TGGTTATGGACGAAACAACGGTTACTCACGTGGTGGTTATGGAGGGCGTGGTTATGGCGG 1981
Query 1948 ttatggtggccgtggcggtgg------tggctatgggtatggtggacgtggcCAGGGGAG 2001
|||||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 1982 TTATGGTGGCCGTGGCGGCGGCGGCGGTGGCTACGGGTATGGTGGACGTGGCCAGGGGAG 2041
Query 2002 AGGCGTATCAAATCGTACTTCCTAAAACC-TTATGCT---------T-TAAAGACTTAAA 2050
||||||||||||||||||| |||||| | || |||| | |||||||| |||
Sbjct 2042 AGGCGTATCAAATCGTACTACCTAAA-CTGTTCTGCTAGAAAGGGCTCTAAAGACTCAAA 2100
Query 2051 ATCCAATGGGAGCTCATGCT-TTGAGTGCTTTTGGTATGTGGCAATAAAACAAAAAACTA 2109
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | |
Sbjct 2101 ATCCAATGGGAGCTCA-GCTCTTGAGTGCTTTTGGTATGTGGCAATAAAACAAAAACCGA 2159
Query 2110 GTCTCATGTAATGTTTTCTGTTATAAAACCCCCCTTGTGTGGTTTTCGAGTGTATCATTT 2169
||| | |||||||||||||||||||||||||| ||||||||||||| |||||||| | ||
Sbjct 2160 GTCCCGTGTAATGTTTTCTGTTATAAAACCCCACTTGTGTGGTTTTGGAGTGTATTAATT 2219
Query 2170 TGATTTCGGATCCTTGTTTTTAAGACTTGGTAATAGCGTCGTTCTTCTTATATTCAGTGT 2229
||||||| |||| |||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 2220 TGATTTCTGATCTTTGTTTTTAAGACTTGGTAATAGCGTCGTTCTTCTTATATCCAATGT 2279
Query 2230 TATTTTCAACTTTTGTAGACT 2250
|||||| |||||||||| |||
Sbjct 2280 TATTTTGAACTTTTGTATACT 2300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111646012080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5