BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472808
Length=1624
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26090.1 | Symbols: | P-loop containing nucleoside triphosp... 2518 0.0
AT1G26100.1 | Symbols: | Cytochrome b561/ferric reductase tran... 364 1e-99
> AT1G26090.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:9020380-9022769
FORWARD LENGTH=1647
Length=1647
Score = 2518 bits (1363), Expect = 0.0
Identities = 1548/1636 (95%), Gaps = 17/1636 (1%)
Strand=Plus/Plus
Query 1 GTAGAACGCAAACGTGAATTGTGT-T-AGCTCCGATCACTCCTTTTATCACAAGCGGCTC 58
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 16 GTAGAACGCAAACGTGAATTGTGTGTCAGCTCCGATCACTCCTTTTATCACAAGCGGCTC 75
Query 59 TAGTTAAGCTCCGGCCAATCTGATCTTTTGAATTTTACACCCaaaaa-aaaaaaaaTGGT 117
|||| ||||||||||||||||||||||||||||||||| ||||||| || || ||||||
Sbjct 76 TAGTGGAGCTCCGGCCAATCTGATCTTTTGAATTTTACA-CCAAAAATAATAATAATGGT 134
Query 118 GGCTTTGGTC---GCTTCT-T--CATGCTCAAGCCTAACTCTGAATCTCCTTCCCATCCT 171
| |||||||| ||||| | ||||||||||||| |||||||||||||||||||| ||
Sbjct 135 GTCTTTGGTCAATTCTTCTCTAACATGCTCAAGCCTTACTCTGAATCTCCTTCCCATTCT 194
Query 172 TCGTACGGAAGCACCTTCACTCTCCAGGAAGCGTCGACCAGCTTCTGTGGTGGCAACATC 231
||||||||| |||||||||||||||||||||||||| |||||| ||||| ||| |||||
Sbjct 195 GCGTACGGAAACACCTTCACTCTCCAGGAAGCGTCGAGCAGCTTATGTGGCGGCTACATC 254
Query 232 TTCTAGAGATGACAACGATACCGTCGCTGATTCTTCTCAGAAACCCACCAAATTCGTCAC 291
||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 255 TTCTAGAGATGTTAACGATACCGCCGCTGATTCTTCTCAGAAACTCACCAAATTCGTCAC 314
Query 292 ATTTCTCGGCAAAGGCGGCTCCGGAAAGACCACCGCCGCTGTTTTCGCCGCTCAGCATTA 351
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 315 CTTTCTCGGAAAAGGCGGCTCCGGCAAGACCACCGCCGCTGTTTTCGCCGCTCAGCATTA 374
Query 352 CGCATTGGCTGGGCTCAGTACATGTTTAGTGGTACATAATCAAGACCCTTCTGCTGATTT 411
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 375 CGCATTGGCTGGGCTCAGTACATGTTTGGTGATACATAATCAAGACCCTTCTGCTGAATT 434
Query 412 CCTCCTTGGAAGCAAGATTGGGACTTCTCCTACCTTGATCAACGACAATCTCTCTGTGAT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 435 CCTCCTTGGAAGCAAGATTGGGACTTCTCCTACCTTGATCAACGACAATCTCTCTGTCAT 494
Query 472 TAGGCTCGAAACCACAAAAATGCTTCTAGAACCTCTTAAACAGCTGAAGCAAGCAGATGC 531
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TAGGCTAGAAACCACAAAAATGCTTCTAGAACCTCTTAAACAGCTGAAGCAAGCAGATGC 554
Query 532 TCGACTTAATATGACCCAAGGGGTTCTTGAAGGGGTGGTTGGAGAAGAGCTAGGAGTACT 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TCGACTTAATATGACCCAAGGGGTTCTTGAAGGGGTGGTTGGAGAAGAGCTAGGAGTACT 614
Query 592 TCCAGGGATGGATTCCATCTTTTCAATGCTTGAACTTGAGAGGCTTGCTGGTTTCTTTAG 651
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 615 TCCAGGGATGGATTCCATCTTTTCAATGCTTGAACTCGAGAGGCTTGTTGGTTTCTTTAG 674
Query 652 GCAAGCAACCCGAATGAACCACAAGGGGGAA-CCTTTTGACGTTATCATTTACGATGGCA 710
|||||||||||||| ||| ||||||||| || |||||||||||||| ||||| |||||||
Sbjct 675 GCAAGCAACCCGAAAGAATCACAAGGGG-AAGCCTTTTGACGTTATAATTTATGATGGCA 733
Query 711 TTAGCTCTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGATTGTATGTGA 770
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 734 TTAGCACTGAGGAAACTCTTCGGATGATAGGTCTAAGCAGTAAAACAAGATTGTATGCGA 793
Query 771 GATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAGGCTAACAAGTCCTTCCATTA 830
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 794 AATATCTGAGAAGTTTGGCCGAGAAGACAGATTTGGGGAGGCTAACAAGTCCGTCCATTA 853
Query 831 TGAGATTTGTTGATGAGTCCATGAACATAAGCGGCAATAAGTCGCCTTTTGATGGTATGA 890
||||||||||||||||||| |||||||||| | | |||||||||||||| ||||||||||
Sbjct 854 TGAGATTTGTTGATGAGTCAATGAACATAAACAGTAATAAGTCGCCTTTCGATGGTATGA 913
Query 891 CAAGTCCTGCCATGTGGGATACTTTGGAACGTTTCTGGGAGACCGGTGCTTCTGCTTGGA 950
|||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||
Sbjct 914 CAAGTCCTGCCATGTGGGATACTTTGGAACGTTTCTTGGAGACTGGCGCTTCTGCTTGGA 973
Query 951 GAGATCCAGAGAGATTCAGGAGTTTTCTTGTAATGGACCCAAATAATCCTATGTCTGTTA 1010
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 974 GAGATCCAGAGAGATTCAGGAGTTTTCTTGTAATGGACCCAAACAATCCTATGTCTGTTA 1033
Query 1011 AAGCCGCATTACGGTATTGGGGATGTACAGTACAAGCAGGATCTCATGCTTCTGGGGTGT 1070
|||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 1034 AAGCTGCATTACGGTATTGGGGTTGTACAGTACAAGCAGGATCTCATGTTTCTGGGGCGT 1093
Query 1071 TTGCTATTTCTTCTTCTCATCCGACAAGCAAAATCCCAGAA-GAAGATTTTGTGCCGCTG 1129
||||||||||||||||||||| ||| ||| ||||||| ||| | |||||||||||| |||
Sbjct 1094 TTGCTATTTCTTCTTCTCATCTGACCAGCCAAATCCC-GAAAGCAGATTTTGTGCCACTG 1152
Query 1130 CCCTTTGCATCTGCATCAGTTCCATTTACTATAACTGGTCTGGATTGGGACAAAATCCTG 1189
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1153 CCATTTGCTTCTGCATCAGTTCCATTTACTATAACTGGTCTGGATTGGGACAAAATTCTG 1212
Query 1190 CTGGACCAAGCGAATTCAAGTATCCGGGAACTTCTTTCTGAAACTGTTAGCCATGGAACC 1249
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 1213 CTGGACCAAGCGAATTCAAGTATCCGGGAACTTCTCTCTGAAACTGTAAGCCATGGGACC 1272
Query 1250 AGCTTGACACAAACAGTAATGTTTGATTCAGCAAAGAAATTGGTGACTCTTTTCATGCCG 1309
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1273 AGCTTGACACAAACAGTAATGTTTGATACAGCAAAGAAATTGGTGACTCTTTTCATGCCG 1332
Query 1310 GGGTTTGAAAAATCGGAAATCAAACTGTATCAGTACAGAGGAGGTTCTGAGCTCTTAATA 1369
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1333 GGGTTTGAAAAATCAGAAATCAAACTGTATCAGTATAGAGGAGGTTCTGAGCTCTTAATA 1392
Query 1370 GAAGCTGGGGACCAAAGACGTGTGATTCATTTGCC-TCCTCAGATTCAAGGAAAAGTTGG 1428
|||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||
Sbjct 1393 GAAGCTGGGGACCAAAGACGAGTGATTCATTTACCGTC-TCAGATTCAAGGAAAAGTTGG 1451
Query 1429 TGGAGCAAAGTTTCTGGACAGAAGTCTCATCATCACAATGCGGTGATACATTTTCGAAGA 1488
|||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1452 AGGAGCAAAGTTTGTGGACAGAAGTCTCATCGTCACAATGCGGTAATACATTTTCGAAGA 1511
Query 1489 ACTAATTTGTTCTTTTTGTACACCAGAGATGTGTAGTTTGTCCCCAAAACCAATACAAAC 1548
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1512 ACTAATTTGTTCTTTTTGTACACCAGAGATGTGTAGTTTGTCCCCAAA-CCAATACAAAC 1570
Query 1549 TAAAAAGAATGAAGATTAAAAACTCAAGAAGACAAACATTTGGGACGATCTTGAGATGAA 1608
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1571 TAAAAAGAATGAAAATTAAAAACTCAAGAAGACAAACATTTAGGACGATCTTGAGATGAA 1630
Query 1609 TAAACGAGTTTCTCAT 1624
||||||||||||||||
Sbjct 1631 TAAACGAGTTTCTCAT 1646
> AT1G26100.1 | Symbols: | Cytochrome b561/ferric reductase transmembrane
protein family | chr1:9022542-9024081 REVERSE LENGTH=885
Length=885
Score = 364 bits (197), Expect = 1e-99
Identities = 219/229 (96%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 1397 CATTTGCC-TCCTCAGATTCAAGGAAAAGTTGGTGGAGCAAAGTTTCTGGACAGAAGTCT 1455
||||| || | |||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 885 CATTTACCGT-CTCAGATTCAAGGAAAAGTTGGAGGAGCAAAGTTTGTGGACAGAAGTCT 827
Query 1456 CATCATCACAATGCGGTGATACATTTTCGAAGAACTAATTTGTTCTTTTTGTACACCAGA 1515
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 CATCGTCACAATGCGGTAATACATTTTCGAAGAACTAATTTGTTCTTTTTGTACACCAGA 767
Query 1516 GATGTGTAGTTTGTCCCCAAAACCAATACAAACTAAAAAGAATGAAGATTAAAAACTCAA 1575
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 766 GATGTGTAGTTTGTCCCCAAA-CCAATACAAACTAAAAAGAATGAAAATTAAAAACTCAA 708
Query 1576 GAAGACAAACATTTGGGACGATCTTGAGATGAATAAACGAGTTTCTCAT 1624
|||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 707 GAAGACAAACATTTAGGACGATCTTGAGATGAATAAACGAGTTTCTCAT 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80220470910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5