BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472817
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25530.1 | Symbols: | Transmembrane amino acid transporter ... 2337 0.0
> AT1G25530.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr1:8964544-8967428 REVERSE LENGTH=1643
Length=1643
Score = 2337 bits (1265), Expect = 0.0
Identities = 1426/1503 (95%), Gaps = 13/1503 (1%)
Strand=Plus/Plus
Query 1 TGAGATTGTCTCACTACACTTGCAAAAAAGACACACAATGGTCTCTACTTCTCCGGTTTC 60
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1 TGAGATTGTCTCACTACACTTGCAAAAAAGACACGCAATGGTCTCTAGTTCTCCGGTTTC 60
Query 61 TCCGTCTAAGGAAACTGACCGGAAGACCGGTGAGAAATGGACGGCGGGGGATCCATCACG 120
||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||
Sbjct 61 TCCGTCTAAGGAAACTGACCGGAAGTCCGGCGAGAAATGGACGGCGGAAGATCCATCACG 120
Query 121 GCCAGCCAAGTGGTGGTACTCCACCTTCCACACCGTCACCGCCATGATCGGTGCCGGAGT 180
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 121 GCCAGCCAAGTGGTGGTACTCCACCTTCCACACCGTCACCGCCATGATTGGCGCGGGAGT 180
Query 181 CCTCAGCCTCCCTTATGCCATGGCTTACCTTGGCTGGGGACCAGGGACCTTTGTGTTGGT 240
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTCAGCCTTCCTTATGCCATGGCTTACCTTGGCTGGGGACCAGGGACCTTTGTGTTGGC 240
Query 241 AATGACATGGGGACTGACCCTAAACACTATGTGGCAAATGGTGCAGCTTCATGAGTGCGT 300
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 241 AATGACGTGGGGACTGACCCTAAACACTATGTGGCAAATGGTGCAGCTCCATGAGTGTGT 300
Query 301 ACCGGGAACTCGGTTTGACCGGTATATCGATCTAGGCCGGTATGCTTTTGGCCCAAAACT 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACCGGGAACCCGGTTTGACCGGTATATCGATCTAGGCCGGTATGCTTTTGGCCCAAAACT 360
Query 361 TGGCCCATGGATCGTCCTCCCTCAGCAGCTCATCGTCCAGGTTGGCTGCAACATCGTTTA 420
|||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 361 TGGCCCATGGATCGTCCTCCCTCAACAGCTAATCGTCCAGGTCGGCTGCAACATCGTTTA 420
Query 421 CATGGTGACAGGAGGCAAGTGCTTGAAGCAGTTCGTGGAGATCACTTGCTCCACCTGTAG 480
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 421 CATGGTGACAGGAGGCAAGTGCTTGAAGCAGTTCGTGGAGATCACTTGTTCCACCTGTAC 480
Query 481 GCCGGTCCGACAGTCGTACTGGATCCTCGCCTTCGGTGGAGTCCACTTT-ATCCTCTCCC 539
||||| |||||||||||||||||||||| ||||||||||||||| ||| || |||||||
Sbjct 481 ACCGGTACGACAGTCGTACTGGATCCTCGGCTTCGGTGGAGTCCA-TTTCATTCTCTCCC 539
Query 540 AGCTCCCTAACTTCAACTCGGTCGCCGGAGTCTCCTTGGCCGCAGCCATCATGTCCCTCT 599
||||||||||||||||||| || |||||||||||| |||| || ||| ||||||| ||||
Sbjct 540 AGCTCCCTAACTTCAACTCCGTTGCCGGAGTCTCCCTGGCTGCCGCCGTCATGTCTCTCT 599
Query 600 GCTACTCAACGATAGCTTGGGGAGGAAGTATCGCACATGGAAGAATGCCTGACGTGAGCT 659
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 GCTACTCGACGATAGCTTGGGGAGGAAGTATCGCACATGGAAGAGTGCCTGACGTGAGCT 659
Query 660 ACGATTACAAGGCCACGAATGCGAGTGACTTCACGTTCCGAGTCTTCAATGCGTTAGGTC 719
| ||||||||||| |||||| || |||||||||| ||||||||||| |||||||||||||
Sbjct 660 ATGATTACAAGGCGACGAATCCGGGTGACTTCACATTCCGAGTCTTTAATGCGTTAGGTC 719
Query 720 AGATCTCATTCGCTTTCGCCGGCCACGCTGTGGCTCTAGAGATTCAAGCCACAATGCCTT 779
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 720 AGATCTCATTCGCTTTCGCTGGCCACGCTGTGGCTCTAGAGATTCAAGCCACGATGCCTT 779
Query 780 CCACTCCTGAGAGACCATCCAAGGTGCCCATGTGGCAAGGCGTGATCGGAGCTTACGTGG 839
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 CCACTCCTGAGAGACCATCCAAGGTGCCCATGTGGCAAGGAGTGATCGGAGCTTACGTGG 839
Query 840 TCAACGCCGTTTGCTATTTTCCTGTGGCTCTGATTTGCTATTGGGCCTTTGGTCAAGACG 899
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 840 TCAACGCCGTTTGCTATTTTCCTGTGGCTCTGATATGCTATTGGGCCTTTGGTCAAGACG 899
Query 900 TGGACGACAATGTGCTGATGAATCTACAGAGACCAGCTTGGCTCATTGCTTCTGCTAATC 959
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 900 TGGACGACAATGTGCTGATGAATCTACAGAGACCAGCTTGGCTCATTGCTGCTGCTAATC 959
Query 960 TCATGGTTGTTGTCCATGTCATCGGTAGCTACCAAGTGTTTGCTATGCCTGTCTTTGATC 1019
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 960 TCATGGTTGTTGTCCATGTCATTGGTAGCTACCAAGTGTTTGCTATGCCTGTCTTTGATC 1019
Query 1020 TTTTGGAGAGGATGATGGTTTACAAATTCGGTTTTAAGCATGGCGTTGCTCTGAGGTTTT 1079
|||||||||||||||||||| ||||||| |||||||||||||| |||| |||||||||||
Sbjct 1020 TTTTGGAGAGGATGATGGTTAACAAATTTGGTTTTAAGCATGGAGTTGTTCTGAGGTTTT 1079
Query 1080 TCACTCGAACTATTTATGTCGCATTTACATTATTTATTGGAGTGAGTTTCCCCTTCTTTG 1139
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1080 TCACTCGAACTATTTATGTCGCATTTACATTGTTCATTGGAGTGAGTTTCCCCTTCTTTG 1139
Query 1140 GAGACCTTCTAGGGTTCTTTGGAGGATTTGGTTTTGCACCTACTTCTTTCTTCCTCCCAA 1199
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAGACCTTCTAGGCTTCTTTGGAGGATTTGGTTTTGCACCTACTTCTTTCTTCCTCCCAA 1199
Query 1200 GTATAATGTGGCTTATCATCAAGAAACCAAGGAGATTTAGCGTCACCTGGTTTGTCAATT 1259
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1200 GTATAATGTGGCTTATCATCAAGAAACCAAGGAGATTCAGCGTCACCTGGTTCGTCAATT 1259
Query 1260 GGATCTCCATTATCGTTGGAGTGTTCATAATGCTGGCGTCAACAATTGGAGGGTTGAGGA 1319
|||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1260 GGATCTCCATTATCGTAGGAGTGTTCATAATGTTAGCGTCAACAATTGGAGGGTTGAGGA 1319
Query 1320 ACATCATCGCAGATTCTTCTACTTATAGTTTCTACGCTTAATAT-GTAATAGATCTAGCT 1378
||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 1320 ACATCATTGCAGATTCTTCTACTTATAGTTTCTACGCTTAATATTG-AATAGATCT---T 1375
Query 1379 TGTACACTAAAGTATGAATCATTGGATCATCTAA-TTAAAAAGTGTAGGAATAAATCATC 1437
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1376 -GTACACTAAAGCATGAATCATTGGATCATCTAAATTAAAAAGTGTAGGAATAAATCATC 1434
Query 1438 TAAATGG--T--TGGTCAGATCGAGTTAGAGAGTGATGTAAAATGCTACTTATTCAATAA 1493
||||| | ||||| |||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1435 TAAATTAACTGATGGTCGGATCGAGTTAGAGAGTGATGTATAATGCTACTTGTTCAATAA 1494
Query 1494 GAC 1496
|||
Sbjct 1495 GAC 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73794801150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5