BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472822
Length=2108
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25490.1 | Symbols: RCN1, REGA, ATB BETA BETA, EER1 | ARM re... 3430 0.0
AT1G13320.1 | Symbols: PP2AA3 | protein phosphatase 2A subunit... 1136 0.0
> AT1G25490.1 | Symbols: RCN1, REGA, ATB BETA BETA, EER1 | ARM
repeat superfamily protein | chr1:8951202-8955107 FORWARD LENGTH=2110
Length=2110
Score = 3430 bits (1857), Expect = 0.0
Identities = 2029/2112 (96%), Gaps = 11/2112 (1%)
Strand=Plus/Plus
Query 1 AAAAATCAAACGGAGAATATTATTTTTCTCGCTCGC-AATTCCTCTTTCTCACCTTTTCT 59
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 6 AAAAATCAAACGCAGAATATTATTTTTCTCGCTCGCGAATTCCTCTTTCTCACCTTTTCT 65
Query 60 CGC-CCATCGGAATCTGAAGAAGCAGCTCTTCTACGACGCCTGGATCGTGACTTGATTCG 118
||| || | ||||||| ||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 66 CGCTCC-TGGGAATCT---GAAGCAGTTCTTCTCCGACGCCTGGATCGTGATTTGATTCG 121
Query 119 AACTTTCACATAAGATGGCTATGGTAGATGAACCGTTGTATCCCATTGCTGTGCTCATAG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 122 AACTTTCACATAAGATGGCTATGGTAGATGAACCGTTGTATCCCATTGCTGTGCTTATAG 181
Query 179 ATGAGCTTAAGAATGATGATATTCAGCTTCGTTTGAACTCGATCCGTCGCTTATCTACTA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATGAGCTTAAGAATGATGATATTCAGCTTCGTTTGAACTCGATCCGTCGCTTATCTACTA 241
Query 239 TAGCTCGTGCCCTTGGTGAGGAACGCACAAGGAAGGAATTAATCCCTTTTTTGAGTGAGA 298
|||||||||| ||||| ||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 242 TAGCTCGTGCTCTTGGAGAGGAGCGTACAAGGAAGGAGTTAATCCCTTTTTTGAGTGAGA 301
Query 299 ATAGTGATGATGACGACGAGGTGCTGCTTGCAATGGCTGAGGAATTGGGAGTTTTTATTC 358
||||||| |||||||| |||||||| ||||||||||||||||| || |||||||||||||
Sbjct 302 ATAGTGACGATGACGATGAGGTGCTTCTTGCAATGGCTGAGGAGTTAGGAGTTTTTATTC 361
Query 359 CGTTTGTCGGAGGAATTGAGTATGCGCATGTTCTTCTTCCTCCTTTGGAATCTCTCTGTA 418
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 362 CGTTTGTTGGAGGAATTGAGTTTGCGCATGTTCTTCTTCCTCCTTTGGAATCTCTATGTA 421
Query 419 CTGTTGAAGAGACCTGTGTGAGAGAAAAAGCTGTGGAGTCGCTTTGTAAGATCGGATCTC 478
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 422 CTGTTGAAGAGACTTGTGTGAGAGAAAAAGCTGTGGAATCGCTTTGTAAGATTGGATCTC 481
Query 479 AAATGAAAGAGAATGATCTTGTTGAATCCTTTGTCCCTCTTGTGAAGAGACTAGCAGCTG 538
| |||||||||||||||||||||||||| ||||| |||||||||||||| |||| | ||
Sbjct 482 AGATGAAAGAGAATGATCTTGTTGAATCTTTTGTTCCTCTTGTGAAGAGGTTAGCGGGTG 541
Query 539 GTGAATGGTTTGCAGCAAGAGTTTCTGCATGTGGTATATTTCATGTTGCATACCAAGGTT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GTGAATGGTTTGCAGCAAGAGTTTCTGCATGTGGTATATTTCATGTTGCATACCAAGGTT 601
Query 599 GCACTGATGTGCTGAAGACAGAGTTACGGGCTACTTATAGCCAGTTGTGCCAAGATGATA 658
||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 602 GCACTGATGTGTTGAAGACTGAGTTACGGGCTACTTATAGCCAGTTGTGCAAAGATGATA 661
Query 659 TGCCTATGGTGCGAAGAGCTGCTGCATCTAACCTGGGGAAATTTGCTACAACTGTCGAGT 718
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 TGCCAATGGTGCGAAGAGCTGCTGCATCTAACCTGGGGAAATTTGCTACAACTGTCGAGT 721
Query 719 CTACCTTTTTGATTGCTGAGATCATGACTATGTTCGATGATCTTACTAAAGATGACCAAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CTACCTTTTTGATTGCTGAGATCATGACTATGTTCGATGATCTTACTAAAGATGACCAAG 781
Query 779 ATTCTGTGAGACTTTTGGCTGTGGAAGGGTGTGCAGCTCTTGGAAAGTTGCTGGAACCTC 838
||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 782 ATTCTGTGAGACTATTGGCTGTTGAAGGGTGTGCAGCTCTTGGAAAGTTGTTGGAACCTC 841
Query 839 AGGATTGTGTTGCACGCATTTTACCTGTTATTGTTAATTTCTCTCAGGATAAATCTTGGA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 AGGATTGTGTTGCACGCATTTTACCTGTTATTGTTAATTTCTCTCAGGATAAATCTTGGA 901
Query 899 GGGTGCGCTACATGGTTGCTAATCAGCTATATGAACTTTGTGAGGCAGTGGGTCCTGATT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GGGTGCGCTACATGGTTGCTAATCAGCTATATGAACTTTGTGAGGCAGTGGGTCCTGATT 961
Query 959 GCACGAGGACGGATTTGGTTCCAGCATATGTGAGATTGCTAAGGGACAATGAGGCTGAAG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GCACGAGGACGGATTTGGTTCCAGCATATGTGAGATTGCTAAGGGACAATGAGGCTGAAG 1021
Query 1019 TGCGAATAGCAGCAGCGGGAAAAGTGACCAAGTTCTGTCGGCTTTTGAATCCAGAGCTTG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TGCGAATAGCAGCAGCGGGAAAAGTGACCAAGTTCTGTCGGCTTTTGAATCCAGAGCTTG 1081
Query 1079 CGATTCAGCACATCCTTCCTTGTGTGAAGGAATTATCATCTGATTCTTCTCAACATGTCC 1138
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1082 CGATTCAGCACATCCTTCCTTGTGTGAAGGAATTATCATCGGATTCTTCTCAACATGTCC 1141
Query 1139 GCTCTGCTCTAGCTTCAGTAATAATGGGAATGGCTCCTATCCTTGGGAAGGACTCAACCA 1198
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1142 GCTCTGCTCTAGCTTCAGTAATAATGGGGATGGCTCCTATCCTTGGGAAGGACTCAACCA 1201
Query 1199 TTGAGCATCTGTTACCAATTTTTCTTTCCCTTCTGAAAGATGAATTTCCTGATGTGCGCC 1258
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1202 TTGAGCATCTGTTACCAATTTTTCTTTCCCTTTTGAAAGATGAATTTCCTGATGTGCGCC 1261
Query 1259 TCAACATCATAAGCAAGCTAGATCAAGTCAACCAGGTTATTGGAATTGATCTACTGTCTC 1318
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1262 TTAACATCATAAGCAAGTTAGATCAAGTCAACCAGGTTATTGGAATTGATCTACTATCTC 1321
Query 1319 AATCCTTGTTACCGGCCATTGTAGAGCTTGCTGAGGATCGGCACTGGAGAGTCCGACTTG 1378
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1322 AATCCTTGTTACCGGCCATTGTAGAACTTGCTGAGGATCGGCACTGGAGAGTCCGACTTG 1381
Query 1379 CGATAATAGAGTATGTTCCTCTGTTGGCCAGCCAGTTAGGTATAGGATTTTTCGATGACA 1438
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 CAATAATAGAGTATGTTCCACTGTTGGCCAGCCAGTTAGGTATAGGATTTTTCGATGACA 1441
Query 1439 AGCTTGGAGCCCTTTGCATGCAATGGCTGCAAGACAAGGTCTACTCTATCCGTGAAGCTG 1498
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1442 AGCTCGGAGCCCTTTGCATGCAATGGCTGCAAGACAAGGTCTACTCTATCCGCGAAGCTG 1501
Query 1499 CAGCAAACAACCTAAAGCGCCTTGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACT 1558
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1502 CAGCAAACAACCTAAAGCGCCTCGCAGAGGAGTTTGGTCCTGAATGGGCAATGCAGCACT 1561
Query 1559 TAGTTCCCCAGGTATTGGACATGGTCAACAATCCACACTACCTACATAGGATGATGGTTC 1618
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1562 TAGTTCCCCAGGTATTGGACATGGTCAACAATCCGCACTACCTACACAGGATGATGGTTC 1621
Query 1619 TACGTGCAATATCTCTCATGGCTCCTGTAATGGGATCAGAAATCACATGCTCTAAGTTTC 1678
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1622 TACGCGCAATATCTCTCATGGCGCCTGTAATGGGATCAGAAATCACATGCTCTAAGTTTC 1681
Query 1679 TTCCTGTGGTCGTTGAAGCATCGAAAGACAGAGTTCCAAACATCAAGTTCAATGTTGCAA 1738
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 1682 TTCCTGTGGTTGTTGAAGCATCAAAAGACAGAGTTCCAAACATCAAGTTCAACGTTGCCA 1741
Query 1739 AACTTCTGCAATCCCTCATCCCCATAGTCGACCAATCAGTGGTGGACAAAACAATCCGTC 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1742 AACTTCTGCAATCCCTCATCCCCATAGTCGACCAATCAGTGGTGGACAAAACAATCCGTC 1801
Query 1799 AGTGTTTGGTAGACCTTAGCGAAGACCCTGATGTTGATGTTCGCTATTTTGCAAACCAAG 1858
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1802 AGTGTTTGGTGGACCTGAGCGAAGACCCTGATGTTGATGTTCGTTATTTTGCAAATCAAG 1861
Query 1859 CGCTTAATTCCATCGATGGTACCACAGCAGCACAATCCTGAATTGATTTTATTTCATATG 1918
| |||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||
Sbjct 1862 CACTTAATTCCATCGATGGTTCCACAGCAGCACAATCCTGAATTGTTTTTTTTTCATATG 1921
Query 1919 TATGATCGTTAAGTTAAGTTTCT-T-ATTCGTGTTCTTTCTGCAGTTTATTTGGTTTGTT 1976
||||||||||||||||||||||| | ||||||||||| ||||| |||||||||||||||
Sbjct 1922 TATGATCGTTAAGTTAAGTTTCTATTATTCGTGTTCT--CTGCAATTTATTTGGTTTGTT 1979
Query 1977 TCGTGTAAAACGCCATTTTGGTTGCTGGCTATGAACTGCAACTATATTTGTTAGTAAAAT 2036
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1980 T-GTGTAAAACGCCATTTTGGTTGCTGGCTATGAACTGCAACTATTTTTGTTAGTAAAAT 2038
Query 2037 TGTATTCCCTTTCTTACATTTTCTATTGTTCCAAGCTTTATACATTCTTCTTAGTTTACT 2096
|||||| ||||| ||||| ||||| ||||||||| | |||||||||||||||||||||||
Sbjct 2039 TGTATTACCTTTTTTACACTTTCTGTTGTTCCAAACCTTATACATTCTTCTTAGTTTACT 2098
Query 2097 AATGCTAACACT 2108
||||||||||||
Sbjct 2099 AATGCTAACACT 2110
> AT1G13320.1 | Symbols: PP2AA3 | protein phosphatase 2A subunit
A3 | chr1:4563476-4567750 REVERSE LENGTH=2070
Length=2070
Score = 1136 bits (615), Expect = 0.0
Identities = 1404/1775 (79%), Gaps = 94/1775 (5%)
Strand=Plus/Plus
Query 132 GATGGCTATGGTAGATGAACCGTTGTAT-CCC-ATTGCTGTGCTCATAGATGAGCTTAAG 189
|||| ||||||| ||||| || || ||| ||| ||||||||||| || || ||||| ||
Sbjct 90 GATGTCTATGGTTGATGAGCC-TT-TATACCCGATTGCTGTGCTTATCGACGAGCTAAAA 147
Query 190 AATGATGATATTCAGCTTCGTTTGAACTCGATCCGTC-GCTTATCTACT-ATAGCTCGTG 247
|| ||||||||||||| | | |||||||| || | |||| |||| | || |||||||
Sbjct 148 AACGATGATATTCAGCGTAGATTGAACTCTATTAAACGGCTT-TCTA-TCATTGCTCGTG 205
Query 248 CCCTTGGTGAGGA-ACGCACAAGGAAGGAATT-AATCCCTTTTTTGAGTGAGAATAGTGA 305
| ||||| ||||| | | ||||| || || || | ||| ||| || |||||||| | |||
Sbjct 206 CTCTTGGAGAGGAGA-GGACAAGAAAAGAGTTGATTCCATTTCTT-AGTGAGAACAATGA 263
Query 306 TGATGACGACGAGGTGCTGCTT-GCAATGGCTGAGGAATTGGGAGTTTTTATTCCGTTTG 364
|||||||| |||||||| || || ||||| || || ||||| | |||||||| || ||
Sbjct 264 CGATGACGATGAGGTGCT-TTTGGCTATGGCGGAAGAGTTGGGGGGTTTTATTCTGTATG 322
Query 365 TCGGAGGAATTGAGTATGCGCATGTTCTTCTTCCTCCTTTGGA-ATCTCTCTGTACTGTT 423
| ||||| |||||||||| ||||||| ||||| |||||||| | |||| | ||||||
Sbjct 323 TAGGAGGGGTTGAGTATGCATATGTTCTGCTTCCACCTTTGGAGA-CTCTATCCACTGTT 381
Query 424 GAAGAGACCTGTGTGAGAGAAAAAGCTGTGGAGTCGCTTTGTAAG-ATCGGAT-CTCAAA 481
|| || || || ||||| || ||||||||||| || |||||| || || || | |||| |
Sbjct 382 GAGGAAACTTGCGTGAGGGAGAAAGCTGTGGATTCACTTTGT-AGAATTGG-TGCTCAGA 439
Query 482 TGAAAGAGAATGATCTT-GTTGAATCCTTTGTC-CCTCTTG-TGAAGAGACTAGCAGCTG 538
||| |||| ||| ||| |||| | | ||| | ||||| | | ||| |||| ||||||
Sbjct 440 TGAGGGAGAGTGA-CTTGGTTG-AGCATTTCACTCCTCTGGCT-AAGCGACTTTCAGCTG 496
Query 539 GTGAATGGTTTGCAGCAAGAGTTTCTGCATGTGGTATATTT-CATGTTGCATA-CCAAGG 596
|||||||||| |||| ||||| || |||||||| || ||| ||| ||||||| |||| |
Sbjct 497 GTGAATGGTTCACAGCCAGAGTATCAGCATGTGGGAT-TTTCCATATTGCATACCCAA-G 554
Query 597 TTG-CACTGATGTGCTGAAGACAGAGTTACGGGCTACT-TATAGCCAG-TTGTGCCAAGA 653
|| | | |||||||| ||||| ||| || | | | | ||| | ||| || || |||||
Sbjct 555 -TGCCCCAGATGTGCTAAAGACGGAGCTAAGATC-AATATATGGTCAGCTT-TGTCAAGA 611
Query 654 TGATATGCCTATGGTGCGAAGAGCTGCTGCATCTAACCTGGGGAAATTTGCTACAACTGT 713
||| ||||| |||||||| |||||||| ||| |||| ||||||| |||||| | || |
Sbjct 612 TGACATGCCAATGGTGCGCAGAGCTGCAGCAACTAATTTGGGGAAGTTTGCTGCTACAAT 671
Query 714 CGAGTCTACCT-TTTTGATTG-CTGAGATCATGACTATGTTCGATGATCTTACTAAAGAT 771
|| || | || ||||| | | || || ||| | ||||| || |||||||| |||||
Sbjct 672 TGAATC-AGCTCATTTGA-AGACAGACATTATGTCCATGTTTGAGGATCTTACGCAAGAT 729
Query 772 GACCAAGATTCTGTGAGACTT-TTGGCTGTGGAAGGG-TGTGCAGCTCTT-GGAAAGTTG 828
|| |||||||| || ||| || |||||||| | |||| ||||| |||||| ||||| |||
Sbjct 730 GATCAAGATTCGGTTAGA-TTATTGGCTGTTG-AGGGTTGTGCTGCTCTTGGGAAA-TTG 786
Query 829 CTGGAACCTCAGGATTGTGTTGCACGCATT-TTACCTGTTATTGTTAATTTCTCTCAGGA 887
|||| || ||||| |||||||||| |||| || ||||| ||||| |||||||| |||||
Sbjct 787 TTGGAGCCCCAGGACTGTGTTGCACACATTCTT-CCTGTGATTGTCAATTTCTCGCAGGA 845
Query 888 TAAATCTTGGAGGGTGCGCTACATGGTTGCTAATCAGCTATATGAACTTTGTGAGGCAGT 947
||| || ||| | ||||| || |||||||| |||||||| |||||||||||||| || ||
Sbjct 846 TAAGTCCTGGCGTGTGCGTTATATGGTTGCAAATCAGCTCTATGAACTTTGTGAAGCTGT 905
Query 948 GGGTCCTGATTG-C-ACGAGGACGGATTTGGTTCCAGCATATG-TGAGAT-TGCTAAGGG 1003
|| || || | | || ||||||||| |||| || ||||||| | | | | || | |
Sbjct 906 AGGACCGGA--GCCAACTAGGACGGATCTGGTGCCTGCATATGCT-CG-TCTACTTTGTG 961
Query 1004 ACAATGAGGCTGAAGTGCGAATAGCAGCAGCGGGAAAAGTGACCAAGTTCTGTCGGC-TT 1062
| |||||||| ||||| || |||||||| || |||||||| |||||||| |||| || ||
Sbjct 962 ATAATGAGGCAGAAGTTCGGATAGCAGCTGCTGGAAAAGTTACCAAGTTTTGTC-GCATT 1020
Query 1063 TTGAATCCAGAGCTTGCGATTCAGCACATCCTTCCTTGTGTGAAGGAATTATCATCTGAT 1122
|| || || || || || || |||||||| ||||| ||||| |||||||||||||| ||
Sbjct 1021 TTAAACCCTGAACTCGCTATCCAGCACATTCTTCCCTGTGTAAAGGAATTATCATCAGAC 1080
Query 1123 TCTTCTCAACATGTCCGCTCTGC-TCTAGCTTCAGTAATAATGGGAATGGCTCCTA-TCC 1180
|||||||| || ||| | ||||| | | || ||||| ||||||||||||||||| | | |
Sbjct 1081 TCTTCTCAGCACGTCAGATCTGCAT-TGGCATCAGTTATAATGGGAATGGCTCC-AGT-C 1137
Query 1181 TTGGG-AAGGACT-CAACCATTGAGCATC-TGTTACCAATTTTTCTTTCCCT-TCTGAAA 1236
||||| ||||| | |||| |||||||||| | || ||||| |||||||| || | |||||
Sbjct 1138 TTGGGTAAGGA-TGCAACAATTGAGCATCTTCTT-CCAATCTTTCTTTCTCTAT-TGAAA 1194
Query 1237 GATGAATTTCCTGATGTGCGCCTCAACATCATAAGCAAGCTAGATCAAGTCAACCAGGTT 1296
|| |||||||||||||| ||| | ||||| || ||||| || || ||||| |||||||||
Sbjct 1195 GACGAATTTCCTGATGTACGCTTAAACATTATCAGCAAACTTGACCAAGTGAACCAGGTT 1254
Query 1297 ATTGGAATTGATCTACTGTCTCAATCCTTGTTACCGGCCATTGTAGAGCTTGCTGAGGAT 1356
||||| ||||||||||| || ||||| || | || ||||||||||| |||||||| ||
Sbjct 1255 ATTGGGATTGATCTACTATCACAATCGTTACTGCCAGCCATTGTAGAACTTGCTGAAGA- 1313
Query 1357 C-GGCACTGGAGAGTCCGACTTGCGATAATAGAGTATGTT-CCTCTGTTGGCCAGCCAGT 1414
| ||||||||||||| || || || ||||| |||||| || ||| |||||||||| || |
Sbjct 1314 CAGGCACTGGAGAGTACGTCTGGCTATAATCGAGTATATTCCCT-TGTTGGCCAGTCAAT 1372
Query 1415 TAGGTATAGGATT-TTTCGATGACAAGCTTGGAGCCCTTTGCATGCAATGGCTGCAAGAC 1473
||||| |||| || ||| ||||| |||||||| || ||||||||||||||| | ||||||
Sbjct 1373 TAGGTGTAGGCTTCTTT-GATGAGAAGCTTGGTGCTCTTTGCATGCAATGGTTACAAGAC 1431
Query 1474 AAGG-TCTACTCTATCCGTGAAGCTGCAGCAAACAACCTAAAGCGCCTTGCAGAGGAGTT 1532
|||| || |||| |||||||||||||| |||||||| || ||||| ||||| || |||||
Sbjct 1432 AAGGTTC-ACTCAATCCGTGAAGCTGCTGCAAACAATCTGAAGCGTCTTGCTGAAGAGTT 1490
Query 1533 TGGTCCTGAATGGGCAATGCAGCACT-TAGTTCCCCAGGTAT-TGGACATGGTCAACAAT 1590
|||||||||||||||||||||||| | ||||||| ||||| | | || ||| | |||||
Sbjct 1491 TGGTCCTGAATGGGCAATGCAGCA-TATAGTTCCTCAGGT-TCTAGAGATGATTAACAAC 1548
Query 1591 CCACACTACCTACATAGGATGATGGTTCTACGTGCAATATCTCT-CATGGCTCCTGTAAT 1649
|||||||| ||| || |||||| | |||| |||||| |||| || | | ||||| |||||
Sbjct 1549 CCACACTATCTATATCGGATGACGATTCTTCGTGCAGTATCGCTTC-TCGCTCCAGTAAT 1607
Query 1650 GGGATCAGAAATCACATGCTCTAAGTTTCTT-CCTGTGGTCGTTGAA--GCATCGAAAGA 1706
|||||| || |||||||| || || | ||| |||| ||| | || ||||| |||||
Sbjct 1608 GGGATCCGAGATCACATGTTCCAAACT-CTTACCTGCGGTAAT--AACTGCATCTAAAGA 1664
Query 1707 CAGAGTTCCAAACATCAAGTTCAATGTTGC-AAAACTTCTGCAATCCCTCATCCCCATAG 1765
|||||||||||||||||| || || || || |||| | ||||||| ||||| || ||||
Sbjct 1665 CAGAGTTCCAAACATCAAATTTAACGTGGCCAAAA-TGATGCAATCTCTCATTCCGATAG 1723
Query 1766 TCGACCAATCAGTGGTGGACAAAACAATCCGTC-AGTGTTTGGTAGACCTTAGCGAAGAC 1824
|||||||| | || ||||| || | || || | | || ||||| || || || ||||||
Sbjct 1724 TCGACCAAGCGGTTGTGGAGAACATGATACGGCCA-TGCTTGGTGGAGCTAAGTGAAGAC 1782
Query 1825 CCTGATGTTGATGTTCGCTATTTTGCAAACCAAGC 1859
|| |||||||||||||| ||||| ||||| |||||
Sbjct 1783 CCAGATGTTGATGTTCGGTATTTCGCAAATCAAGC 1817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104517534690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5