BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472824
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25472.1 | Symbols: CPuORF54 | conserved peptide upstream op... 1783 0.0
AT1G25470.1 | Symbols: | AP2 domain-containing transcription f... 1783 0.0
> AT1G25472.1 | Symbols: CPuORF54 | conserved peptide upstream
open reading frame 54 | chr1:8944609-8946628 REVERSE LENGTH=1645
Length=1645
Score = 1783 bits (965), Expect = 0.0
Identities = 1222/1336 (91%), Gaps = 57/1336 (4%)
Strand=Plus/Plus
Query 1 AAGAACAGGAACAG-TAAAAGTC-GGATTTTTGGGT-TTCAGAGAAGCAATCGGAGAACA 57
|||||||||||||| |||||||| |||||||||||| || ||||||||||| | |||||
Sbjct 27 AAGAACAGGAACAGTTAAAAGTCGGGATTTTTGGGTATT-TGAGAAGCAATC-G-GAACA 83
Query 58 ACAACGGCGTTTGTAACGCGGATTTTATGTCGGCTGTGTCTGAATCGGCTGTGATTTCGT 117
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 84 ACAACGGCGTTTGTAACGCGGA-TTTATGTCGGCTGTGTCTGAATCGGCTGCGATTTCGT 142
Query 118 CTCTGTTTCTAATCTCCTTTGCAATTCAATCG------TCTTCTTCGTCGTCTGTCTTGT 171
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 143 CTCTGTTTCTAATCTCCTTTGCAATTCAATCGTCTTCTTCTTCTTCCTCGTCTGTCTTGT 202
Query 172 TCTTTGGTCTGAGTCTGACCGCTGTTCTTAACGCTCTTCGCTTCTGCTCGGAACAGAGGC 231
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 203 TCTTTGGTCTGAGTCTGACGGCTGTTCTTAACGCTCTTCGCTTCTGCTCCGAACAGAGGC 262
Query 232 TTATTCTTGAGGTTCCTTCCATTTCCATGGGCTTAAGGCTAAAAAGGACTTGTTCTGGTG 291
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 263 TTATTCTTGAGGTTCCTTCCATTTCCATGGGCTTAAGACTTAAAAGGACTTGTTCTGGTG 322
Query 292 TTGAAGTATTTGGGGGTTTTCACGAAAAGCAAAAAATACCCTTTTTCATAG-T---T--- 344
||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 323 TTGAAGTATTTGGGGGTTTTCACGAAAAGCAAAAAATACCCTTTTTCATAGTTCGCTGAA 382
Query 345 -C---G-----------CTG--AAACACCTCATCCGATTTAGCAG-TTTTGATCAGA-AG 385
| | ||| ||| ||||||||||||||||||| ||||||||||| |
Sbjct 383 ACAGAGAAATCTTTTTCCTGAAAAAAACCTCATCCGATTTAGCAGTTTTTGATCAGAGAT 442
Query 386 TTTTGAGT-GGG--TTTTTGCTGTGTTCTTGGTTTGTTTGAAAAGATATGAAGTCCTTTG 442
|||||||| ||| |||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 443 TTTTGAGTGGGGTTTTTTTGGTGTGTTCTTGGTGTGTTTGAGAAGATATGAAGTCCTTTG 502
Query 443 TGAAACCTGAGAAAGACTCTTTGTTGAGAACAGTCCGTATTATTTTCACTGATCCTGATG 502
|||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 503 TGAAACCTGAGAGAGACTCTTTGTTGAGAACAGTTCGTATTGTTTTCACTGATCCTGATG 562
Query 503 CTACTGATGATTCCTCTTCCTCTAGCGATGAATGGTTACCTAAACCTCGAAAGGTAAAGC 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 CTACTGATGATTCCTCTTCCTCTAGCGATGAATGGTTACCTAAACCTCGAAAGGTAAAGC 622
Query 563 GTTTTGTCCATGAGATTACTTTCCTCTCTCAGGTCTCCGAGAGTTCTCAGGATCGTAGCA 622
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 623 GTTTTGTTCATGAGATTACTTTCCTCCCTCAGGTCTCCGAGAGTTCTCAGGATCGTAGCA 682
Query 623 ATGCTATCAAAACCCCTAGAAAG-AA--TACCAGGCAGTTAAAGTATCCTGTGGGAGTTA 679
||||| ||||||||||||||| | || ||| |||||||| |||||||||||||||||||
Sbjct 683 ATGCTGTCAAAACCCCTAGAAGGAAATCTACTAGGCAGTTTAAGTATCCTGTGGGAGTTA 742
Query 680 GGTCGAGGCCATCAGGCAAATTTGCTGCTGAGATTATGAACCCATTCACTAAAACTAAGA 739
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 743 GGCCGAGGCCATCAGGCAAATTTGCTGCTGAGATTTTGAACCCATTCACTAAAACTAAGA 802
Query 740 AATGGTTGGGTACTTATGAAACTCCTGCAGAAGCTGAGAAGGCTTATGTTGACAAGAAGG 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 AATGGTTGGGTACTTATGAAACTCCTGCAGAAGCTGAGAAGGCTTATGTTGACAAGAAGG 862
Query 800 TTGAGTATAATGCATTGGCCTCTTCAGGTTCTGCTGTTTCCTCATCGGTTGTATCAGTGA 859
|||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 863 TTGAGTATGATGCACTGGCTTCTTCAGGTTCTGCTGTTTCCTCATCGGTTGTAACAGTGA 922
Query 860 CTAGCCAGTGCTTGCGTTCTCCTGCTTCTGCTTCTGTTTCTTGTGTCAGTGCTGATGATT 919
||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 923 CTAGCCAGTGCTTGCGTTCCCCTACTTCTGCTTCTGTTTCTTGTGTAAGTGCTGATGATT 982
Query 920 TGTCTAAAGAAAAGTCGACTCTGAACAAAGATGTTGCTGCGTCTAGTGATGATTCAACCA 979
|||||||||||||| || |||||||||||||||||||||||||| | | |||||||||||
Sbjct 983 TGTCTAAAGAAAAGACGTCTCTGAACAAAGATGTTGCTGCGTCT-G-G-TGATTCAACCA 1039
Query 980 --AG-GAAGTTTTCACCACTTTCGACTTTTCCGATCTGAAAATCCCTGATCTGAGATTCT 1036
| ||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 1040 CCAAAGAAGTGTTCACTACTTTCGACTTTTCGGATGTGAAAATACCTGATCTGAGATTCT 1099
Query 1037 TAGCAGCAGAAGAGGATTCTATGATTTCTGATGCAAATGGTGCAGAGCTAGACTTTGATT 1096
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1100 TAGCAGCAGAAGAGGATTCTATGGTTTCTAATGCAAATGGTGCAGAGCTAGACTTTGATT 1159
Query 1097 GTATTCTTT-CTGCCGAGTGTAACCTTCTGCTGGATGATTACTCTTTGCTCGATAATGGT 1155
|| ||| || ||| | | |||| ||||||||||||||||||| |||||||| |||| |
Sbjct 1160 GT-TTCCTTACTGAC---TCTAACATTCTGCTGGATGATTACTCATTGCTCGAAAATGAT 1215
Query 1156 TTCAACATCAGCGGGTTTGAAAACAGTCTTCCAAGTGAGCTACCTGACTGCGATTTCACT 1215
||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1216 ATCAACTTCAGCAGGTTTGAAAACAGTCTTCCAAGTGAGCTACCTGACTGTGATTTCACT 1275
Query 1216 GAAATGGAACGCGAGCTTGATGATTTCAAATTTGCCTATGCAGATCAACTGACAACACCG 1275
||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1276 GAAATGGAATTCCAGCTTGATGATTTCAAATTTGCCTATACAGATCATCTGACAACACCG 1335
Query 1276 CCTCTCGAGTTCGGTT 1291
||||||| ||| ||||
Sbjct 1336 CCTCTCG-GTTTGGTT 1350
Score = 106 bits (57), Expect = 6e-22
Identities = 71/77 (92%), Gaps = 4/77 (5%)
Strand=Plus/Plus
Query 1300 CTTCGTATCTCTTTTGTCTCTTCGTGTCGTAC-T--CTCTTTTAATGTT-GTCTAATCAG 1355
|||||||||||||||||||||| |||| |||| | ||||||||||||| ||||||||||
Sbjct 1553 CTTCGTATCTCTTTTGTCTCTTGGTGTTGTACCTTTCTCTTTTAATGTTTGTCTAATCAG 1612
Query 1356 GACAGAAAATCTAAACC 1372
|||||||||||||||||
Sbjct 1613 GACAGAAAATCTAAACC 1629
> AT1G25470.1 | Symbols: | AP2 domain-containing transcription
factor family protein | chr1:8944609-8946628 REVERSE LENGTH=1645
Length=1645
Score = 1783 bits (965), Expect = 0.0
Identities = 1222/1336 (91%), Gaps = 57/1336 (4%)
Strand=Plus/Plus
Query 1 AAGAACAGGAACAG-TAAAAGTC-GGATTTTTGGGT-TTCAGAGAAGCAATCGGAGAACA 57
|||||||||||||| |||||||| |||||||||||| || ||||||||||| | |||||
Sbjct 27 AAGAACAGGAACAGTTAAAAGTCGGGATTTTTGGGTATT-TGAGAAGCAATC-G-GAACA 83
Query 58 ACAACGGCGTTTGTAACGCGGATTTTATGTCGGCTGTGTCTGAATCGGCTGTGATTTCGT 117
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 84 ACAACGGCGTTTGTAACGCGGA-TTTATGTCGGCTGTGTCTGAATCGGCTGCGATTTCGT 142
Query 118 CTCTGTTTCTAATCTCCTTTGCAATTCAATCG------TCTTCTTCGTCGTCTGTCTTGT 171
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 143 CTCTGTTTCTAATCTCCTTTGCAATTCAATCGTCTTCTTCTTCTTCCTCGTCTGTCTTGT 202
Query 172 TCTTTGGTCTGAGTCTGACCGCTGTTCTTAACGCTCTTCGCTTCTGCTCGGAACAGAGGC 231
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 203 TCTTTGGTCTGAGTCTGACGGCTGTTCTTAACGCTCTTCGCTTCTGCTCCGAACAGAGGC 262
Query 232 TTATTCTTGAGGTTCCTTCCATTTCCATGGGCTTAAGGCTAAAAAGGACTTGTTCTGGTG 291
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 263 TTATTCTTGAGGTTCCTTCCATTTCCATGGGCTTAAGACTTAAAAGGACTTGTTCTGGTG 322
Query 292 TTGAAGTATTTGGGGGTTTTCACGAAAAGCAAAAAATACCCTTTTTCATAG-T---T--- 344
||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 323 TTGAAGTATTTGGGGGTTTTCACGAAAAGCAAAAAATACCCTTTTTCATAGTTCGCTGAA 382
Query 345 -C---G-----------CTG--AAACACCTCATCCGATTTAGCAG-TTTTGATCAGA-AG 385
| | ||| ||| ||||||||||||||||||| ||||||||||| |
Sbjct 383 ACAGAGAAATCTTTTTCCTGAAAAAAACCTCATCCGATTTAGCAGTTTTTGATCAGAGAT 442
Query 386 TTTTGAGT-GGG--TTTTTGCTGTGTTCTTGGTTTGTTTGAAAAGATATGAAGTCCTTTG 442
|||||||| ||| |||||| |||||||||||| ||||||| ||||||||||||||||||
Sbjct 443 TTTTGAGTGGGGTTTTTTTGGTGTGTTCTTGGTGTGTTTGAGAAGATATGAAGTCCTTTG 502
Query 443 TGAAACCTGAGAAAGACTCTTTGTTGAGAACAGTCCGTATTATTTTCACTGATCCTGATG 502
|||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 503 TGAAACCTGAGAGAGACTCTTTGTTGAGAACAGTTCGTATTGTTTTCACTGATCCTGATG 562
Query 503 CTACTGATGATTCCTCTTCCTCTAGCGATGAATGGTTACCTAAACCTCGAAAGGTAAAGC 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 CTACTGATGATTCCTCTTCCTCTAGCGATGAATGGTTACCTAAACCTCGAAAGGTAAAGC 622
Query 563 GTTTTGTCCATGAGATTACTTTCCTCTCTCAGGTCTCCGAGAGTTCTCAGGATCGTAGCA 622
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 623 GTTTTGTTCATGAGATTACTTTCCTCCCTCAGGTCTCCGAGAGTTCTCAGGATCGTAGCA 682
Query 623 ATGCTATCAAAACCCCTAGAAAG-AA--TACCAGGCAGTTAAAGTATCCTGTGGGAGTTA 679
||||| ||||||||||||||| | || ||| |||||||| |||||||||||||||||||
Sbjct 683 ATGCTGTCAAAACCCCTAGAAGGAAATCTACTAGGCAGTTTAAGTATCCTGTGGGAGTTA 742
Query 680 GGTCGAGGCCATCAGGCAAATTTGCTGCTGAGATTATGAACCCATTCACTAAAACTAAGA 739
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 743 GGCCGAGGCCATCAGGCAAATTTGCTGCTGAGATTTTGAACCCATTCACTAAAACTAAGA 802
Query 740 AATGGTTGGGTACTTATGAAACTCCTGCAGAAGCTGAGAAGGCTTATGTTGACAAGAAGG 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 AATGGTTGGGTACTTATGAAACTCCTGCAGAAGCTGAGAAGGCTTATGTTGACAAGAAGG 862
Query 800 TTGAGTATAATGCATTGGCCTCTTCAGGTTCTGCTGTTTCCTCATCGGTTGTATCAGTGA 859
|||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 863 TTGAGTATGATGCACTGGCTTCTTCAGGTTCTGCTGTTTCCTCATCGGTTGTAACAGTGA 922
Query 860 CTAGCCAGTGCTTGCGTTCTCCTGCTTCTGCTTCTGTTTCTTGTGTCAGTGCTGATGATT 919
||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||
Sbjct 923 CTAGCCAGTGCTTGCGTTCCCCTACTTCTGCTTCTGTTTCTTGTGTAAGTGCTGATGATT 982
Query 920 TGTCTAAAGAAAAGTCGACTCTGAACAAAGATGTTGCTGCGTCTAGTGATGATTCAACCA 979
|||||||||||||| || |||||||||||||||||||||||||| | | |||||||||||
Sbjct 983 TGTCTAAAGAAAAGACGTCTCTGAACAAAGATGTTGCTGCGTCT-G-G-TGATTCAACCA 1039
Query 980 --AG-GAAGTTTTCACCACTTTCGACTTTTCCGATCTGAAAATCCCTGATCTGAGATTCT 1036
| ||||| ||||| |||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 1040 CCAAAGAAGTGTTCACTACTTTCGACTTTTCGGATGTGAAAATACCTGATCTGAGATTCT 1099
Query 1037 TAGCAGCAGAAGAGGATTCTATGATTTCTGATGCAAATGGTGCAGAGCTAGACTTTGATT 1096
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1100 TAGCAGCAGAAGAGGATTCTATGGTTTCTAATGCAAATGGTGCAGAGCTAGACTTTGATT 1159
Query 1097 GTATTCTTT-CTGCCGAGTGTAACCTTCTGCTGGATGATTACTCTTTGCTCGATAATGGT 1155
|| ||| || ||| | | |||| ||||||||||||||||||| |||||||| |||| |
Sbjct 1160 GT-TTCCTTACTGAC---TCTAACATTCTGCTGGATGATTACTCATTGCTCGAAAATGAT 1215
Query 1156 TTCAACATCAGCGGGTTTGAAAACAGTCTTCCAAGTGAGCTACCTGACTGCGATTTCACT 1215
||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1216 ATCAACTTCAGCAGGTTTGAAAACAGTCTTCCAAGTGAGCTACCTGACTGTGATTTCACT 1275
Query 1216 GAAATGGAACGCGAGCTTGATGATTTCAAATTTGCCTATGCAGATCAACTGACAACACCG 1275
||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1276 GAAATGGAATTCCAGCTTGATGATTTCAAATTTGCCTATACAGATCATCTGACAACACCG 1335
Query 1276 CCTCTCGAGTTCGGTT 1291
||||||| ||| ||||
Sbjct 1336 CCTCTCG-GTTTGGTT 1350
Score = 106 bits (57), Expect = 6e-22
Identities = 71/77 (92%), Gaps = 4/77 (5%)
Strand=Plus/Plus
Query 1300 CTTCGTATCTCTTTTGTCTCTTCGTGTCGTAC-T--CTCTTTTAATGTT-GTCTAATCAG 1355
|||||||||||||||||||||| |||| |||| | ||||||||||||| ||||||||||
Sbjct 1553 CTTCGTATCTCTTTTGTCTCTTGGTGTTGTACCTTTCTCTTTTAATGTTTGTCTAATCAG 1612
Query 1356 GACAGAAAATCTAAACC 1372
|||||||||||||||||
Sbjct 1613 GACAGAAAATCTAAACC 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5