BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472827
Length=909
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25460.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1146 0.0
> AT1G25460.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:8942811-8944244 FORWARD LENGTH=963
Length=963
Score = 1146 bits (620), Expect = 0.0
Identities = 723/772 (94%), Gaps = 9/772 (1%)
Strand=Plus/Plus
Query 1 ATGGCAGAGTACTTGGTTACTGGAGGAACCAGCTTTATAGCCTCTCACGTCATCAAGACA 60
|||||||||||||||||||| |||||||||||||||||||||||||| || |||||| ||
Sbjct 1 ATGGCAGAGTACTTGGTTACCGGAGGAACCAGCTTTATAGCCTCTCATGTTATCAAGTCA 60
Query 61 CTTCTCGAATTTGGTCATTACGTAAGAACAACTGTTAGAGACTCAGGAGATGAAGAAAAG 120
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTTCTAGAATTTGGTCATTACGTAAGAACAACTGTTAGAGACTCAGAAGATGAAGAAAA- 119
Query 121 GACGTTGGTTTTC-TATGGGAGTTAAAAGGAGCAAAAGAAAGGTTGAAGATCTTTGAAGC 179
| | ||| |||| | ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 120 G--G-TGGGTTTCTTGTGGGACTTAAAAGGAGCAAAAGAAAGGTTGAAGATCTTCGAAGC 176
Query 180 TGATCTAACGGTAGAAGGAAGCTTTGATGATGCAGTCAACGGTGTTGATGGAGTCTTCCA 239
|||||||||| |||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 177 TGATCTAACGATAGAGGGAAGCTTTGACGAAGCAGTCAACGGTGTTGATGGAGTCTTCCA 236
Query 240 CATCGCATCCCGAGTTTCTGTTGGTC-GAGATAACAACAATCTGGAGAAATTTGATCCGA 298
||||||||| |||||||||||| ||| | || |||||||||||||| ||||||||||| |
Sbjct 237 CATCGCATCTCGAGTTTCTGTTCGTCTG-GACAACAACAATCTGGATAAATTTGATCCTA 295
Query 299 ATATAAGTGGAACAATGAATGTGATGAACTCTTGTGCAAAGTCAAGAAACACTGTGAAGA 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 296 ATATAAGTGGAACAATGAATGTGATGAACTCTTGTGCAAAGTCAAGAAACACTGTGAAAA 355
Query 359 GGATTGTTCTCACATCTTCTTCAACTACAATACGTTACCGTTTTGACGCTACACAAGTCT 418
||||||||||||||||||||||||| | ||||| ||||||||||| |||||||||||||
Sbjct 356 GGATTGTTCTCACATCTTCTTCAACCGCGATACGGTACCGTTTTGATGCTACACAAGTCT 415
Query 419 CTCCACTTAACGAATCGCATTGGACTGATCTTGAATACTGCAAACGCTTCAAAATTTGGT 478
|||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 416 CTCCACTTAATGAATCGCATTGGACCGATCTTGAATACTGCAAACACTTCAAAATTTGGT 475
Query 479 ATGGC-TATAAAAAGACTTTAGGGGAGAAAGAAGCGTGGAGGATCGCAGCTGATAAGAAG 537
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 476 AT-GCTTATAAAAAGACTTTAGGGGAGAAAGAAGCTTGGAGGATCGCAGCTGATAAGAAG 534
Query 538 CTAAACCTAGTTGTCGTAATCCCATCATTTTGTATTGGTCCAATACCTAGTCCAAAACCC 597
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 535 CTAAACCTAGTTGTCGTAATCCCATCATTTTGTATTGGTCCAATACTTAGTCCAAAACCT 594
Query 598 ACAAGCTCCCCTCGAATTTTTCTGTCCATTATCAAAGGGACTCGTGGAGCGTACCCTAAT 657
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 595 ACAAGCTCCCCTCTCATTTTTCTGTCCATTATCAAAGGGACTCGTGGAACGTACCCTAAC 654
Query 658 TTCAGGGGAGGTTTTGTGCACATAGAAGATGTAGTAGCTGCACAAATCTTAGCAATGGAA 717
||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 655 TTCAGGGGAGGGTTTGTGCACATAGACGATGTAGTTGCTGCACAAATCTTAGCAATGGAA 714
Query 718 GATCCTAAAGCATCGGGAAGAATCTTATGTTCGAGTTCAGTGGCTCACTGGT 769
|| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 715 GAACCTAAAGCATCAGGAAGAATCTTATGTTCGAGTTCAGTGGCTCACTGGT 766
Score = 207 bits (112), Expect = 1e-52
Identities = 133/143 (93%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 768 GTGTGGTAGTGAAGAAGGGAGAGATATGCCTCATAGCTTGA-ACACAACAAAGATACATG 826
|||||| ||||||||||||| |||||||||||||||||| | |||||||||| |||||||
Sbjct 822 GTGTGGCAGTGAAGAAGGGAAAGATATGCCTCATAGCTT-AGACACAACAAAAATACATG 880
Query 827 AACTTGGCTTTGCCTCCTTCAAGTCATTACCAGAGATGTTTGATGACTGTATCAAGTGTT 886
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 881 AACTTGGCTTTGCCTCCTTCAAGTCATTAACAGAGATGTTTGATGACTGTATCAAGTGTT 940
Query 887 TCCAAGACATGGGTCTACTCTGA 909
| ||||||| |||| | ||||||
Sbjct 941 TTCAAGACAAGGGTTTGCTCTGA 963
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44406985948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5