BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472836
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25380.1 | Symbols: ATNDT2, NDT2 | NAD+ transporter 2 | chr1... 2213 0.0
> AT1G25380.1 | Symbols: ATNDT2, NDT2 | NAD+ transporter 2 | chr1:8903470-8906002
FORWARD LENGTH=1532
Length=1532
Score = 2213 bits (1198), Expect = 0.0
Identities = 1406/1504 (93%), Gaps = 23/1504 (2%)
Strand=Plus/Plus
Query 1 TTCGACTTGGGACCGCCTAAATCGTACGC-AACAAAGTCTCTTCCTTTACCCGTCTACAC 59
||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 43 TTCGACTAGGGACCGCCTAAATCATACGCAAACAAAGTCTCTTCCTTTACCCGTCTACAC 102
Query 60 GTTCG-ATTTTTTCCTCCGGGTCGGGTCAATGTCAAGAACGACGGGAATTGTATATATTC 118
||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 103 GTTCGAATTTTTT-CTCCGGGTCGGGTCAATGTCAAGAACGACGAGAATTGTATATAATC 161
Query 119 ATCGATTCTCGCGGCCGAGTTTATTATCATCTACTGCTGGATCTCGTTTTCAATTTTGAC 178
||||||| || ||||| | | ||||||| ||||||||||||||||||||||||||||
Sbjct 162 GTCGATTCACGTGGCCG-G-GT-TTATCATTTACTGCTGGATCTCGTTTTCAATTTTGAG 218
Query 179 TCAGATTCCCACCAATTGAGAGATTCTAGGGTTTTAAGATGATTGAACATGGGAACTCAA 238
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 219 TCAGATTCCCCCCAATTGAGAGATTCTAGGGTTTTAAGATGATTGAACATGGGAACTCTA 278
Query 239 CCTTTGATTACCGGAGTATTAGAGAGGTCGCCGCAAACGCCGGTGCCGGAGCCACCGCTG 298
||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |
Sbjct 279 CCTTTGATTACCGGAGTATTAGAGAAGTCGCTGCAAACGCCGGCGCCGGAGCCACCGCAG 338
Query 299 GGGCTATCGCGGCGACTTTCGTTTGTCCATTAGATGTGATCAAAACAAGGTTACAGGTTC 358
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GGGCTATCGCGGCGACTTTTGTTTGTCCATTAGATGTGATCAAAACAAGGTTACAGGTTC 398
Query 359 TTGGTCTCCCTGAAACTCCAGCCTCTGGTCAAAGAGGTGGTGTAATCATTACAAGTTTGA 418
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 399 TTGGTCTCCCTGAAGCTCCAGCCTCTGGTCAAAGAGGTGGTGTAATCATTACAAGTCTGA 458
Query 419 AGAATAT-AGTACAGAAAGAAGGTTATAGGGGAATGTATCGAGGGCTTTCACCAACTATT 477
||||||| | || || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 459 AGAATATAATTA-AGGAAGAAGGTTATAGGGGAATGTATCGAGGGCTTTCACCAACCATC 517
Query 478 ATAGCTCTCCTCCCTAATTGGGCTGTCTACTTCTCAGTTTATGGGAAGCTAAAGGATGTG 537
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 ATAGCTCTCCTTCCAAATTGGGCTGTCTACTTCTCAGTTTATGGGAAGCTAAAGGATGTG 577
Query 538 CTGCAGTCAAGTGATGGCAAGCTTAGTATTGGGTCAAACATGGTAGCTGCTGCTGGTGCT 597
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 578 CTGCAGTCAAGTGATGGCAAGCTTAGTATTGGGTCAAACATGATAGCTGCAGCTGGTGCT 637
Query 598 GGAGCTGCTACATCTATTGCAACTAATCCGCTTTGGGTTGTCAAGACAAGATTAATGGTA 657
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 638 GGAGCTGCCACATCTATTGCAACTAATCCGCTTTGGGTTGTCAAGACAAGATTAATG--A 695
Query 658 ACACAAGGAATTAGACC-GGATGTGGTACCTTACAAAAGTGTAATGTCTGCATTTAGTAG 716
| ||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 696 -CGCAAGGAATTAGGCCTGG-TGTGGTACCTTACAAAAGTGTAATGTCTGCATTTAGTAG 753
Query 717 GATTTGTCATGAAGAAGGATTGAGAGGGCTGTACAGTGGCATTTTACCTTCTTTGGCGGG 776
||||||||||||||||||| || ||||| ||||||||||||| || ||||||||||||||
Sbjct 754 GATTTGTCATGAAGAAGGAGTGCGAGGGTTGTACAGTGGCATATTGCCTTCTTTGGCGGG 813
Query 777 AGTAAGCCATGTCGCGATCCAGTTTCCAGCTTATGAAAAGATCAAGCAATACATGGCAAA 836
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 814 AGTAAGCCATGTCGCGATCCAGTTTCCAGCTTATGAAAAAATTAAGCAATACATGGCAAA 873
Query 837 CATGGATAATACATCAGTCGAGAATCTGAGTCCTGGGAATGTTGCTATTGCCTCTTCAAT 896
|||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||
Sbjct 874 GATGGATAATACATCCGTGGAGAATCTGAGTCCTGGGAATGTTGCTATTGCCTCCTCCAT 933
Query 897 CGCGAAAGTGATCGCCTCTGTTTTGACTTACCCACACGAGGTAATTAGGGCCAAGCTTCA 956
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 934 CGCGAAAGTGATCGCCTCTATTTTGACTTACCCACACGAGGTAATTAGGGCGAAGCTTCA 993
Query 957 AGAACAAGGGCAAATGAAAAACGCTGAGACTAAGTATTCGGGAGTCATTGATTGCATCAC 1016
|||||||||||| || | ||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 994 AGAACAAGGGCAGATTAGAAATGCTGAGACTAAGTATTCAGGAGTCATTGATTGCATCAC 1053
Query 1017 GAAGGTGTTTAGAAGCGAAGGGATACCTGGGTTGTACCGTGGATGTGCCACTAATCT-CT 1075
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1054 AAAGGTGTTCAGAAGCGAAGGGATTCCTGGGTTGTACCGTGGATGTGCCACTAATCTACT 1113
Query 1076 TGAGGACAACTCCATCAGCAGTTATTACATTTACAACCTATGAGATGATGCTTAGATTTT 1135
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1114 -GAGGACAACTCCATCAGCAGTTATTACATTTACAACCTATGAGATGATGCTTAGGTTTT 1172
Query 1136 TCCGACAAATTATGCCACCAGAGACTAATAAATCagaagatcacaggagagatgaagaaa 1195
|||||||| || |||||||||||||||||| || || |||| ||| ||||| |||||||
Sbjct 1173 TCCGACAAGTTGTGCCACCAGAGACTAATAGGTCGGATGATCGCAGAAGAGAAGAAGAAA 1232
Query 1196 gaaagagtttagttagtcgacgaggagaagaagaagaaaaagaTTTGGGTTTGAGAGAAT 1255
|||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1233 GAAAGAATTTAGTTAGCCGACGAGGAGAAGAAGAAGATAAAGATTTGGGTTTGAGAGAAT 1292
Query 1256 CACAAACTCAATCTAATAAGATCAGCACTCCCCCTATCCCTCTTGGAAGCAAATAAAG-T 1314
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1293 CACAAACTCAATCTAATAAGATCAGCACTCCCCATATCCCTCTTGGAAGCAAATAAAACT 1352
Query 1315 TTTTCAGACTCAAGCCATGCTTCATAGGTTTTCtttttttCAATGCCATGCATGTTCCAG 1374
||||||||||||||||||||||||||||||||||||||||| |||||||| | | |||
Sbjct 1353 TTTTCAGACTCAAGCCATGCTTCATAGGTTTTCTTTTTTTCGATGCCATG--T-T-CCAA 1408
Query 1375 TTACGTAATTTTTTCCCTTGCGGTGATCGAGTTGTAACCTTTTCTCGTCGTTCTAACAAA 1434
|||||||||||| ||| ||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1409 CTACGTAATTTTTCCCCATGCGGTGATTGAGTTGTAACCTTTTCTCGTGGTTCTAACAAA 1468
Query 1435 TGTGTAAACTATCAATAAACTACTTTTTTGGCCCTTTTGATGATCAGCGAGTCATT-GAA 1493
|||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| |||
Sbjct 1469 TGTGTAAACTATCAATAAACTACTTTTT-GGCCCTTTTGATGATCAGTGAGT-ATTTGAA 1526
Query 1494 GATC 1497
||||
Sbjct 1527 GATC 1530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73845001695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5