BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472839
Length=2373
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25360.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3784 0.0
> AT1G25360.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:8894428-8896800 FORWARD LENGTH=2373
Length=2373
Score = 3784 bits (2049), Expect = 0.0
Identities = 2268/2376 (95%), Gaps = 6/2376 (0%)
Strand=Plus/Plus
Query 1 ATGCAACCGAATCCAGACCTTGTCCGAGCCATCGCCAACCGCTACGCCGCGAATCTCCGC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAACCGAATCCAGACCTTGTCCGAGCCATCGCCAACCGCTACGCCGCGAATCTCCGC 60
Query 61 CTCTGTTTGCCGCTCCGACGAACGTCTCTGCAACTCGCGCGAGCTGTCCATGGAAATATC 120
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 61 CTCTGTTTGCCGCTCCGACGAACATCTCTGCAGCTCGCGCGAGCCGTCCATGGAAATATC 120
Query 121 ATTACTTTCGGGTTCCAGCCACATGCCCATATCCTGAACCGTTTGATTGATGTTTATTGT 180
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTACTTTCGGGTTTCAGCCACGTGCCCATATCCTGAACCGTTTGATTGATGTTTATTGT 180
Query 181 AAATCGTCAGAGCTTGATTATGCACGCCAACTGTTCGATGAAATATCTGAACCAGATAAA 240
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 AAATCGTCAGAGCTAAATTATGCACGCCAACTGTTCGATGAAATCTCTGAACCAGATAAA 240
Query 241 ATCGCTAGAACCACCATGGTTTCCGGGTATTGTGCTTCTGGGGACATCGCCCTCGCTCG- 299
|| ||||||||||||||||| || || ||||||||||| || || ||| ||||||||||
Sbjct 241 ATTGCTAGAACCACCATGGTCTCTGGCTATTGTGCTTCCGGTGATATCACCCTCGCTCGA 300
Query 300 GTCGGTTTTCGAGGAGA-CTCCTGTGAGTATGCGAGATACTGTGATGTACAATGCGATGA 358
| |||||| || || | |||||||| ||||||| |||||||| ||||||||||||||||
Sbjct 301 G-GGGTTTTTGA-GAAAGCTCCTGTGTGTATGCGTGATACTGTAATGTACAATGCGATGA 358
Query 359 TCACTGGCTTCTCACATAACAATGATGGCTACTCTGCTATTAACCTGTTTTGTAAGATGA 418
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 359 TCACTGGCTTTTCACATAACAATGATGGTTACTCTGCTATTAACCTCTTTTGTAAGATGA 418
Query 419 AGCATGAAGGATTTAAACCTGATGACTTCACTTACGCAAGTGTTCTTGCAGGTTTAGCGC 478
||||||||||||| |||||||| ||||||||| |||||||||||| || |||||||||
Sbjct 419 AGCATGAAGGATTCAAACCTGACAACTTCACTTTCGCAAGTGTTCTCGCGGGTTTAGCGT 478
Query 479 TAGTTGTCGATGATGAGAAGCAATGTGTGCAATTTCATGCCGCAGCTCTGAAATCTGGTG 538
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TAGTTGCCGATGACGAGAAGCAATGTGTGCAATTTCATGCCGCAGCTCTGAAATCTGGTG 538
Query 539 CTGGTTATGTTACTTCGGTATCGAACGCTCTGGTGTCTGTGTATTCGAGATGTGCTTCTT 598
|||||||| |||||||||| || ||||||||||||||||||||||||| |||||| ||||
Sbjct 539 CTGGTTATATTACTTCGGTTTCTAACGCTCTGGTGTCTGTGTATTCGAAATGTGCGTCTT 598
Query 599 CGCCGTCTCTGCTACATTCAGCTAGAAAAGTGTTTGATGAGATCCCTGAGAAAGATGAGA 658
| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 599 CTCCGTCTCTGCTACATTCAGCTAGAAAAGTGTTTGATGAGATTCTTGAGAAAGATGAGA 658
Query 659 GGTCGTGGACGACTATGATGACGGGTTATGTAAAGAATGGTTGTTTTGATTTAGGGAAAG 718
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 659 GGTCGTGGACGACTATGATGACGGGTTATGTAAAGAATGGTTATTTTGATTTAGGGGAAG 718
Query 719 AGTTGCTCAAGGGGATGGACGAAAATATGAAGCTGGTTGCTTATAATGCTATGATTTCTG 778
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 719 AGTTGCTTGAGGGGATGGACGACAATATGAAGCTGGTTGCTTATAATGCTATGATTTCTG 778
Query 779 GTTATGTTAATTGCGGTTTGTATCAGGAGGCATTGGAGATGGTTAGAAGGATGGTTTCAT 838
||||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 GTTATGTTAATCGTGGTTTTTATCAGGAGGCATTGGAGATGGTAAGAAGGATGGTTTCAT 838
Query 839 CAGGAATTGAGCTTGATGAGTTTACATATCCTAGCGTTATAAGGGCGTGTGCCACTGCTG 898
| ||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 839 CTGGAATTGAGCTCGATGAGTTTACATATCCTAGCGTTATTAGGGCGTGTGCCACAGCTG 898
Query 899 GATTGCTTCAGTTGGGAAAGCAAGTTCATGCTTATGTATTAAGAAGGGAGGATTTCTCGT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GATTGCTTCAGTTGGGAAAGCAAGTTCATGCTTATGTATTAAGAAGGGAGGATTTCTCGT 958
Query 959 TTCATTTTGACAATTCGTTAGTTTCGTTATACTACAAATGCGGTAAGTTTGATGAGGCAA 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 959 TTCATTTTGACAATTCGTTAGTTTCGTTATACTACAAATGCGGTAAGTTTGATGAGGCGA 1018
Query 1019 GAGCCATTTTCGAGAAAATGCCGGCAAAAGACTTGGTTTCTTGGAATGCGTTGTTATCAG 1078
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1019 GAGCCATTTTTGAGAAAATGCCGGCAAAAGACTTGGTTTCCTGGAATGCGTTGTTGTCAG 1078
Query 1079 GGTATGTTAGTTCTGGGCACATAGGTGAGGCGAAGTTGATTTTCAAAGAGATGAAAGAGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GGTATGTTAGTTCTGGGCACATAGGTGAGGCGAAGTTGATTTTCAAAGAGATGAAAGAGA 1138
Query 1139 AGAATATTCTGTCATGGATGATAATGATATCTGGGTTAGCTGAAAACGGGTTTGGAGAAG 1198
|||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1139 AGAATATTCTATCATGGATGATAATGATATCCGGGTTAGCTGAAAATGGGTTTGGAGAAG 1198
Query 1199 AAGGTTTGAAGCTGTTTTCTTGTATGAAGAGAGAAGGTTTCGAGCCTTGTGATTACGCGT 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1199 AAGGTTTGAAGCTGTTTTCTTGTATGAAGAGAGAAGGTTTCGAGCCTTGTGATTACGCTT 1258
Query 1259 TTTCTGGGGCAATCAAATCATGTGCTGTGTTGGGAGCGTATTGCAACGGGCAACAGTTCC 1318
|||| |||||||||||||||||||| ||| ||||||| |||||||| |||||||||| ||
Sbjct 1259 TTTCCGGGGCAATCAAATCATGTGCCGTGCTGGGAGCATATTGCAATGGGCAACAGTACC 1318
Query 1319 ATGCACAGTTAG-TTAAAATAGGGTTTGACTCTAGCCTCTCTGCTGGAAACGCTCTCATT 1377
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1319 ATGCACAGTT-GCTTAAAATAGGGTTTGACTCTAGCCTCTCTGCTGGAAACGCTCTGATT 1377
Query 1378 ACTATGTATGCGAAATGCGGGGTTGTGGAGGAAGCTCGACAGGTGTTTCGAACTATGCCT 1437
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 ACAATGTATGCGAAATGCGGGGTTGTGGAGGAAGCTCGACAGGTGTTTCGAACTATGCCT 1437
Query 1438 TGTCTGGATTCAGTTTCCTGGAATGCGTTGATTGCTGCACTGGGACAGCATGGCCATGGT 1497
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1438 TGTCTGGATTCGGTTTCCTGGAATGCGTTGATTGCTGCATTGGGACAGCATGGCCATGGT 1497
Query 1498 GTTGAAGCAGTAGATGTGTATGAGGAGATGTTAAAGAAAGGGATAAGACCCGATCGGATT 1557
| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1498 GCTGAAGCAGTAGATGTGTATGAGGAGATGCTAAAGAAAGGGATAAGACCGGATCGGATT 1557
Query 1558 ACGTTTCTTACAGTTTTGACAGCATGTAGCCACGCGGGTTTAGTGGACCAGGGACGGAAA 1617
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 ACGTTGCTTACAGTTTTGACAGCATGTAGCCACGCGGGTTTAGTGGACCAGGGACGGAAA 1617
Query 1618 TATTTCGATTATATGGAGACTGTTTACCGTATACCTCCAGGTGCAGATCATTACGCAAGG 1677
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TATTTTGATTCTATGGAGACTGTTTACCGTATACCTCCAGGTGCAGATCATTACGCAAGG 1677
Query 1678 CTGATCGATTTGCTTTGTCGTTCTGGGAAATTCTCTGATGCTGAAAGTATAATCGAATCA 1737
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1678 CTGATCGATTTGCTTTGTCGTTCTGGGAAATTCTCTGATGCGGAAAGTGTAATCGAATCA 1737
Query 1738 CTACCTTTCAAACCTACTGCAGAAATTTGGGAAGCTCTTCTTTCTGGTTGCAGAGTCCAT 1797
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1738 TTACCTTTCAAACCTACTGCAGAAATCTGGGAAGCTCTTCTTTCTGGTTGCAGAGTGCAT 1797
Query 1798 GGAAACATGGAACTAGGGATCATCGCTGCAGACAAACTCTTCGGTCTCATACCAGAACAT 1857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GGAAACATGGAACTAGGGATCATCGCTGCAGACAAACTCTTCGGTCTCATACCAGAACAT 1857
Query 1858 GATGGGACATACATGCTCTTATCAAACATGTACGCAGCTACTGGCCAGTGGGAGGAAGTG 1917
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1858 GATGGGACATACATGCTCTTATCAAACATGCACGCAGCTACTGGCCAGTGGGAGGAAGTG 1917
Query 1918 GCAAGGGTACGTAAACTAATGCGGGATCGAGGGGTAAAAAAGGAAGTGGCTTGTAGTTGG 1977
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 1918 GCAAGGGTACGTAAACTAATGCGGGATCGAGGTGTAAAAAAAGAAGTAGCTTGTAGTTGG 1977
Query 1978 ATTGAAATGGAGACACAAGTGCATACATTTCTGGTTGATGATACATCACATCCAGAAGCA 2037
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1978 ATTGAAATGGAGACACAAGTGCATACATTTCTAGTTGATGATACATCACATCCAGAAGCA 2037
Query 2038 GAAGCTGTTTACAACTATCTTCAAGACCTGGGTAAAGAGATGAGGAGACTCGGGTATGTA 2097
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 GAAGCTGTTTACATCTATCTTCAAGACCTGGGTAAAGAGATGAGGAGACTCGGGTATGTA 2097
Query 2098 CCAGACACGAGCTTCGTGTTGCACGACGTAGAGTCTGATGGTCACAAGGAAGACATGTTG 2157
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2098 CCAGACACGAGCTTCGTGTTGCACGACGTAGAGTCTGATGGTCACAAGGAAGATATGTTG 2157
Query 2158 ACAACTCATAGTGAGAAGATTGCGGTTGCTTTTGGGCTAATGAAACTTCCTCCTGGAACA 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2158 ACAACTCATAGTGAGAAGATTGCGGTTGCTTTTGGGCTAATGAAACTTCCTCCGGGAACA 2217
Query 2218 ACCATTAGGATTTTTAAGAACTTAAGGACTTGCGGAGATTGTCACAATTTCTTTAGGTTC 2277
|| ||||||||||| |||||||| |||||||| |||||||| || || ||||| ||||||
Sbjct 2218 ACTATTAGGATTTTCAAGAACTTGAGGACTTGTGGAGATTGCCATAACTTCTTCAGGTTC 2277
Query 2278 TTGTCGAAGGTGGTGCAGCGAGACATTATCTTGAGAGACAGGAAGAGGTTTCATCATTTC 2337
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 TTGTCGTGGGTGGTGCAGCGAGACATTATCTTGAGAGACAGGAAGAGGTTTCATCATTTC 2337
Query 2338 CGGAATGGCGAGTGTTCTTGTGGTAACTTCTGGTAG 2373
||||||||||||||||||||||||||||||||||||
Sbjct 2338 CGGAATGGCGAGTGTTCTTGTGGTAACTTCTGGTAG 2373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117820679115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5