BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472858
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25230.1 | Symbols: | Calcineurin-like metallo-phosphoester... 1698 0.0
> AT1G25230.1 | Symbols: | Calcineurin-like metallo-phosphoesterase
superfamily protein | chr1:8840402-8842317 REVERSE LENGTH=1111
Length=1111
Score = 1698 bits (919), Expect = 0.0
Identities = 1001/1042 (96%), Gaps = 0/1042 (0%)
Strand=Plus/Plus
Query 1 GAACAGAATGTGTTCTAAGTTTGATATCGGCTCCTTGAGCATAGTAATGACTCTGCTTCT 60
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 13 GAACAGAATGAGTTCTAAGTTTGATATCGGCTCCTTAAGCATAGTAATGACTCTGCTTAT 72
Query 61 CTGCTTCTTATTATTATCTTTGGCACCAAAACTTGAGGCCAAGCTCGCAACGGTCGAACA 120
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 73 TTGCTTCTTATTATTATCTTTGGCTCCAAAACTTGAGGCTGAGCTCGCAACGGTCCAACA 132
Query 121 TGCTCCAAACCCTGATGGCTCTATCAGTTTTCTGGTGATTGGAGATTGGGGTAGGCGTGG 180
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 133 TGCTCCAAACCCCGATGGCTCTATCAGTTTTCTGGTGATTGGAGATTGGGGTAGGCATGG 192
Query 181 ACTCTATAACCAATCCCAAGTTGCCCTCCAGATGGGGATAATCGGGGAGGAGATGGATAT 240
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 193 ACTCTACAACCAATCCCAAGTTGCCCTCCAGATGGGGAGAATCGGGGAGGAGATGGATAT 252
Query 241 CGATTTTGTGGTATCGACGGGTGATAACATCTACGATAACGGGATGAAAAGCATCGATGA 300
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 253 CAATTTTGTGGTATCGACGGGTGATAACATCTACGATAACGGGATGAAAAGTATCGATGA 312
Query 301 TCCCGCCTTTCAACTCTCCTTCAGTAATATCTACACTTCTCCTAGCCTGCAAAAGCCTTG 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 313 TCCCGCCTTTCAACTCTCCTTTAGTAATATCTACACTTCTCCTAGCCTGCAAAAGCCTTG 372
Query 361 GTACCTTGTATTGGGGAATCACGACTATAGAGGAGATGTTGAGGCACAATTGAGTCCTAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 GTACCTTGTATTGGGGAATCACGACTATAGAGGAGATGTTGAGGCACAATTGAGTCCTAT 432
Query 421 CCTCAGATCTATGGACAGCCGTTGGATTTGCATGAGATCTTTCATCGTTGACGCTGAGAT 480
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 433 CCTCAGATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTGAGAT 492
Query 481 CGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATTTCCTCAATCCACA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 493 CGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATTTCCTCAGTCCACA 552
Query 541 AGACCAAACTTATGACTGGAGTGGCGTATCACCGCGAGAATCCTATCTTCAGACCATCTT 600
|||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||||||||
Sbjct 553 AGACCAAACTTACGACTGGAGCGGCGTATCACCGCGAAAATCCTACCTTCAGACCATCTT 612
Query 601 AACGGAGTTGGAGATGGGTCTAAGAGAATCAAGAGCAAAATGGAAAATTGTGGTGGGTCA 660
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 613 AACGGAGTTGGAGATGGGTCTAAGAGAATCAAGTGCAAAATGGAAAATTGTGGTGGGTCA 672
Query 661 CCATGCTATAAAGAGTGCTTCCATTCATGGGAATACCAAAGAACTTGAATCTCTCCTCTT 720
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 673 CCATGCTATAAAGAGTGCTTCCATTCATGGGAATACCAAAGAGCTTGAATCTCTCCTCTT 732
Query 721 ACCCATCCTTGAGGCGAATAAAGTCGATCTCTATATGAATGGTCATGATCATTGCTTGCA 780
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 733 ACCCATCCTTGAGGCGAATAAAGTTGATCTCTATATGAACGGTCATGATCATTGCTTGCA 792
Query 781 ACAGATAAGCACATCTCAAAGTCCAATTCAGTTTTTAACGAGTGGTGGTGGGTCAAAGGC 840
||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 793 ACATATAAGCACATCACAAAGCCCAATTCAGTTTCTAACGAGTGGTGGTGGGTCAAAGGC 852
Query 841 ATGGAGAGGCTATTACAATTGGACAACACCAGAGGATATGAAATTTTTCTACGATGGACA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ATGGAGAGGCTATTACAATTGGACAACACCAGAGGATATGAAATTTTTCTACGATGGACA 912
Query 901 AGGTTTCATGTCAGTTAAAATCACTAGATCAGAAATGAGTGTCGTTTTTTATGATGTCTT 960
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 913 AGGTTTCATGTCAGTTAAGATCACTAGATCAGAATTGAGTGTCGTTTTTTATGATGTCTC 972
Query 961 CGGCAACATTTTGCACAAATGGGACACATCAAAAATGTTAGACACAGATTTTTATTTCCC 1020
|||||| | |||||| || ||||||||||| |||||||||||| | ||||||||||||||
Sbjct 973 CGGCAATAGTTTGCATAAGTGGGACACATCGAAAATGTTAGACTCGGATTTTTATTTCCC 1032
Query 1021 ATTGTAATTCACATGGAAATCA 1042
||||||||||||||| ||||||
Sbjct 1033 ATTGTAATTCACATGAAAATCA 1054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5