BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472884
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24625.1 | Symbols: ZFP7 | zinc finger protein 7 | chr1:8725... 1448 0.0
> AT1G24625.1 | Symbols: ZFP7 | zinc finger protein 7 | chr1:8725883-8727212
REVERSE LENGTH=1031
Length=1031
Score = 1448 bits (784), Expect = 0.0
Identities = 965/1046 (92%), Gaps = 38/1046 (4%)
Strand=Plus/Plus
Query 1 TTGCGTTTCCACATTTGTTTAAACATAActctctctctctctctctctctctctcttttc 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1 TTGCGTTTCCACATTTGTTTAAACATAA----CTCTCTCTCTCTCTCTCTCTCTC---TC 53
Query 61 tctctccctcaatacctcttattcttatgctcttcttcACCAATCCTATATCTTCTATCT 120
||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 54 TCTCT--CTCAGTACCTCTTATTCTTATGCTCTTCTTCACCAATCCTATCTCTTCTATCT 111
Query 121 GTCttttttttCTCAACATGTGAATTGACCCATTTCTGGTAAACTCAAAGAGTACCACTT 180
|||||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 112 GTCTTTATTTTCTCTACATGTGAATTGACCCATTTCTGGTAAACACATAGAGTACCACTT 171
Query 181 TTCTTATTTAGATTCTCTTCTTCCTCTTCATAGCTTCCAAGTCAACTACTTCAGCTTCTG 240
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 TTCTTATTTAGA-T-TCTTCTTCCTCTTCATAGCTTCCAAGTCAACTACTTCAGCTTCTG 229
Query 241 TCGGCTGTCTCT-CCTCAGATCTCGTTAAGACCGAAAGTTCGAATAAATGACGGAATCTG 299
|||||||||||| || ||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 230 TCGGCTGTCTCTTCC-CAGATCTCGTTAAGACCAAAACTTGGAATAAATGACGGAATCTG 288
Query 300 ATGATGCCTCGCGAGAAACACCACCCAGCAGAGAAGGAGAAGCCTCTTCAAATCAAGATC 359
|||||||||| |||||||||||| ||||||||| |||||||||||| |||||||||||||
Sbjct 289 ATGATGCCTCACGAGAAACACCAGCCAGCAGAGGAGGAGAAGCCTCGTCAAATCAAGATC 348
Query 360 TGTCCAAACCAGAATCAAACCCTGTCTCACTCGATCTCAAGCTCAACGATAGTTTCAACG 419
||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 349 TGTCCAAACCAGAATCAAACCATGTTTCACTCGATCTCAAGCTCAACGATACTTTCAACG 408
Query 420 ATGAGACAAAGAGCACAAAGTGTGAAGCAAACCCGAGAGTCTTCTCTTGCAACTACTGCA 479
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 409 ATGACACAAAGAGCACAAAGTGTGAAGCAAACCCAAGAGTCTTCTCTTGCAACTACTGCA 468
Query 480 GACGCAAGTTCTATAGCTCTCAGGCACTTGGAGGTCACCAGAACGCTCACAAGCGTGAAC 539
|||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||
Sbjct 469 GACGCAAGTTCTATAGCTCTCAAGCTCTTGGAGGTCACCAGAACGCACACAAGCGAGAAA 528
Query 540 GAACAATGGCCAAGCGAGCAATGCACATGGGAAGAATGTTTGGTCACCATCACAGGCCTT 599
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 GAACAATGGCCAAACGAGCAATGCACATGGGAAGAATGTTTGGTCACCATCACAGGCCTT 588
Query 600 ATACATACACTTCTTCTTCCCTTGGGATGCAAGCTCACTCCGGTTTACTTCACCACACCT 659
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 589 ACACATACACTTCTTCTTCCCTTGGGATGCAAGCTCACTCCGGTTTACTTCATCACACCT 648
Query 660 TATCTCAGCCTCAGCCTCTTGTTTCTAGGTTTCATCATCAAGGCTATTTTGGTAACACCG 719
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 649 TATCTCAGCCTCAGCCTCTTGTTTCTAGGTTTCATCATCAAGGGTATTTTGGTAACACCG 708
Query 720 TGCCATTGTTCTTTGACTATGACGATGGCGGCAGCGACTTCTTCTGGCCTGGGAGCTTCC 779
|||| ||||||||||||||||||||||| || ||||||||||||||||| || |||||||
Sbjct 709 TGCCGTTGTTCTTTGACTATGACGATGGTGGTAGCGACTTCTTCTGGCCCGGCAGCTTCC 768
Query 780 GTCAGGTGGTTGAGGAAGCTGAGGCTCCGGTGGT-G-G-TGGCT-GTTACTGAGCCAGGT 835
|||||||||||||||||||||||||||||||||| | | ||||| || |||||| ||||
Sbjct 769 GTCAGGTGGTTGAGGAAGCTGAGGCTCCGGTGGTTGTGGTGGCTAGT-ACTGAGTCAGGC 827
Query 836 CTTGATCTGAACTCGGTTGCGGCGAATGGAGGTGTAGATAATAATAATTCAAAGCCTGAT 895
|||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 828 CTTGATTTGAACTCGGTTGCGGCAAATGGAGGTGTAGATAATAATAGCTCAAAGCCTGAT 887
Query 896 CTTACCTTAAGACTCTAA-----T-A------TC-TCTCTT----GTTCTTTTTATATTG 938
|||||||||||||||||| | | | | |||| ||| ||||| |||||
Sbjct 888 CTTACCTTAAGACTCTAAAAGGATTAAGGAGATTATATCTTTATTGTTATTTTTCTATTG 947
Query 939 TTAGACATATAGCAGAAGATAAGTTGGAGACAGTTGATAGAAATTGATGAAAAACGTTGT 998
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 948 TTAGACATA---CAGAAGATAAGTTGGAGACAGTTGATAGAAATTGATGAAAAACTTTGT 1004
Query 999 TGTTATATTAAATGAGGTTGTTCATT 1024
||||||||||||||||||||||||||
Sbjct 1005 TGTTATATTAAATGAGGTTGTTCATT 1030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50183912853
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5