BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472886 Length=1703 Score E Sequences producing significant alignments: (Bits) Value AT1G24610.1 | Symbols: | Rubisco methyltransferase family prot... 2601 0.0 AT1G24600.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 104 3e-21 > AT1G24610.1 | Symbols: | Rubisco methyltransferase family protein | chr1:8720651-8722746 REVERSE LENGTH=1721 Length=1721 Score = 2601 bits (1408), Expect = 0.0 Identities = 1609/1707 (94%), Gaps = 9/1707 (1%) Strand=Plus/Plus Query 1 CGCTTCGTCGGAACTCATGGCCAATTCGAAAATGGCGATGGCTTCTCTGGCAGCTCAAAT 60 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 20 CGCTTCGTCGGAACTCATGGCCAATTCGAAAATGGCGATAGCTTCTCTAGCAGCTCAAAT 79 Query 61 TCGTCCCTTCACATGTTTGGCCGCGTCTCAGCCGTCGCGGTTGACGCCTCATCCACCAGA 120 |||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||| Sbjct 80 CCGTCCCTTCACATGTTTGGCCGCGTCTCTGCCGTCACGGTTGGCGCCTCATCCACCAGA 139 Query 121 CCTCATCCGGTGGATCAAACGAGAAGGTGGTTTCGTTCACCACGCCGTCAAGCTCTCTCA 180 |||||||||||||||||| |||||||| || |||||||||||||| || ||||||||||| Sbjct 140 CCTCATCCGGTGGATCAAGCGAGAAGGCGGCTTCGTTCACCACGCGGTTAAGCTCTCTCA 199 Query 181 GGAGACTCAATTTGGTATCGGACTCATTTCCACAGAGCAAATCTCTCCAGGCACCGACCT 240 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 200 GGAGACTCAATTTGGTATCGGACTCATTTCCACCGAGCAAATCTCTCCAGGCACCGACCT 259 Query 241 AATCTCTCTCCCTCCTCACGTTCCCTTACGCTTCGAATCAGATGATGCGTCATCGTCATC 300 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct 260 AATCTCTCTCCCTCCTCACGTTCCCTTACGCTTCGAATCAGATGATTCGTCATCTTCATC 319 Query 301 GTCCTCTCTCCTCTCCGCATTGGCCCGTCGTGTTCCCGAAGAACTGTGGGCAATGAAATT 360 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 320 GTCCTCTCTCCTCTCCGCATTGGCCCGTCGTGTTCCTGAAGAACTGTGGGCAATGAAATT 379 Query 361 GGGATTGAGATTGTTACAAGAAAGAGCCAATGCAGATTCTTTCTGGTGGCCATACATCAG 420 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 380 GGGATTGAGGTTGTTACAAGAAAGAGCCAATGCAGATTCTTTCTGGTGGCCATACATTAG 439 Query 421 CAATCTCCCGGAAACTTTTACTGTTCCTATATTCTTTCCCGGAGAAGATATCAAGAACTT 480 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| Sbjct 440 CAATCTCCCGGAAACTTATACTGTTCCCATATTCTTTCCCGGAGAAGATATCAAAAACTT 499 Query 481 GCAATATGCCCCTCTTCTTTACCAGGTCAATAAAAGATGCCGTTTTCTTCTTGAGTTTGA 540 ||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 500 GCAATATGCTCCTCTTCTCCACCAGGTCAACAAAAGATGCCGTTTTCTTCTTGAGTTTGA 559 Query 541 GCAAGAGATTAGACGCACTCTTGAAGATGTTAAGGCTAGTGATCATCCTTTCAGTGGCCA 600 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 560 GCAAGAGATTAGACGTACTCTTGAAGATGTTAAGGCTAGTGATCATCCTTTCAGTGGCCA 619 Query 601 AGATGTAAATGCATCCGCTCTCGGGTGGACTATGTCAGCTGTTTCCACTAGAGCGTTTCG 660 ||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||| Sbjct 620 AGATGTAAATGCATCTGCCCTAGGGTGGACTATGTCAGCTGTTTCAACTAGAGCGTTTCG 679 Query 661 CTTACATGGTAATAAAAAGCTTCAAGGTGGATCTTCTGATGATGTTCCCATGATGCTTCC 720 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 680 TTTACATGGTAATAAAAAGCTTCAAGGTGGATCTTCTGATGATGTTCCCATGATGCTTCC 739 Query 721 TCTGATAGATATGTGCAACCACAGCTTTAAACCAAATG-TCAGGATCATTCAAGAACAGA 779 | ||||||||||||||||||||||||| ||||| |||| || |||||||||||||||||| Sbjct 740 TTTGATAGATATGTGCAACCACAGCTTCAAACCTAATGCTC-GGATCATTCAAGAACAGA 798 Query 780 ACGGAGCTGACTCAAATACTCTAGTTAAGGTTGTTGCAGAGACTGAAGTCAAAGTAAACG 839 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 799 ACGGAGCTGACTCTAATACTCTTGTTAAGGTTGTTGCAGAGACTGAAGTCAAAGAAAACG 858 Query 840 ATCCTTTGCTACTCAACTATGGCTGCCTTAGCAATGAtttttttCTTTTGGACTATGGAT 899 ||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| |||| Sbjct 859 ATCCTTTGCTACTTAACTATGGTTGCCTTAGTAATGATTTTTTCCTTTTGGACTACGGAT 918 Query 900 TTGTGATTGAATCAAATCCATACGACACCATTGAGCTTAAATACGATGAACAGCTCATGG 959 ||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||| Sbjct 919 TTGTGATCGAATCAAATCCATACGATACAATTGAGCTTAAATACGATGAACAGCTTATGG 978 Query 960 ACGCTGCAAGCATGGCGGCTGGTGTTTCTTCCCCAAAGTTCTCTTCACCGGCTCCATGGC 1019 | || || ||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 979 ATGCGGCTAGCATGGCGGCTGGTGTTTCTTCCCCAAAATTCTCTTCACCAGCTCCATGGC 1038 Query 1020 AACATCAGCTGCTTTCCCAGTTAAATTTAGCCGGAGAAATGCCAAATCTGAAGGTAACCA 1079 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1039 AACATCAGCTGCTTTCCCAGTTAAATTTAGCCGGGGAAATGCCAAATCTGAAGGTAACCA 1098 Query 1080 TAGGAGGCCCAGAGCCAGTAGAGAGACGACTATTGGCAGCCATAAGGATACTGCTTTGTG 1139 | ||||||||||||||||||||| ||||||||||||| || |||||||||||||||||| Sbjct 1099 TTGGAGGCCCAGAGCCAGTAGAGGGACGACTATTGGCGGCGTTAAGGATACTGCTTTGTG 1158 Query 1140 GTGAATTGGTGAAAGTTGAGAAGCATGACTTAGACACACTGAAATCTTTATCGGCCATAG 1199 ||||| ||||| |||| ||||||||||||| |||||| |||||||||||||| ||| ||| Sbjct 1159 GTGAACTGGTGGAAGTAGAGAAGCATGACTCAGACACGCTGAAATCTTTATCCGCCGTAG 1218 Query 1200 CCCCTCTTGGAATTGCAAACGAGATTGCGGTTTTCCGCACTGTAATCGCCCTTTGTGTGA 1259 ||||| |||||||||||||||||||||| |||||||| ||||||||||| || ||||||| Sbjct 1219 CCCCTTTTGGAATTGCAAACGAGATTGCCGTTTTCCGTACTGTAATCGCTCTGTGTGTGA 1278 Query 1260 TTGCATTGAGCCACTTTCCGACAAAGATAATGGAAGATGAGGCTATAATCAAACAAGGTG 1319 ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1279 TTGCATTGAGCCATTTTCCGACAAAAATAATGGAAGATGAGGCTATAATCAAACAAGGTG 1338 Query 1320 TTTCAGCCACATCAGAATTGAGTATCAAGTACCGAATCCAGAAGAAATCAGTGATCATAG 1379 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1339 TTTCAGCCACAGCAGAATTGAGTATCAAGTACCGAATCCAGAAGAAATCAGTGATCATAG 1398 Query 1380 ATGTCATGAAAGACCTCACCAGAAGGGTTAAGTTGCTATCGTCTAAGGAGACACCAACTG 1439 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1399 ATGTCATGAAAGACCTCACCAGAAGGGTTAAGTTGCTATCTTCTAAGGAGACACCAACTG 1458 Query 1440 CTGCATAAGAACCATCTCCTGTAAGTTCTCTAGGCTTGGCTTGTTTCAAACGTCAATTTT 1499 |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1459 CTGCATAAGAACCACCTCCTGTAAGTTCTCTAAGCTTGGCTTGTTTCAAACGTCAATTTC 1518 Query 1500 CAAGATGACT-TGTTTAAGGTTAATAATTCTGAAAAACATATAGCGATCGA-TATTTCTC 1557 |||||||| | |||||||||||| | ||| ||||||||||||| ||| | | |||||||| Sbjct 1519 CAAGATGAGTATGTTTAAGGTTATTCATTTTGAAAAACATATACCGACC-ACTATTTCTC 1577 Query 1558 TATGAACTAGC-TGGTTTCCCTCCTCAAGGATTAGATTACATGAATCTATGAACTAGAGA 1616 ||| ||||||| | |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1578 TATTAACTAGCAT--TTTCA-TCCTCAAGGATTAGATTACATGAATCTATGAACTAGAGA 1634 Query 1617 AGGGTGATTAAAATGAGAGGCAAAAGATATGTTGTTTGAGGATATTAAACCGAAGACTCA 1676 |||| ||||||||||||||| |||||| ||||||||| |||||||||||| | ||||||| Sbjct 1635 AGGGAGATTAAAATGAGAGGTAAAAGAGATGTTGTTTCAGGATATTAAACAGGAGACTCA 1694 Query 1677 TCATATTAACCAAAGATATTTACATTG 1703 ||||||||||||||||||||||||||| Sbjct 1695 TCATATTAACCAAAGATATTTACATTG 1721 > AT1G24600.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67920.1); Has 18 Blast hits to 18 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8720309-8720721 FORWARD LENGTH=413 Length=413 Score = 104 bits (56), Expect = 3e-21 Identities = 66/71 (93%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 1633 GAGGCAAAAGATATGTTGTTTGAGGATATTAAACCGAAGACTCATCATATTAACCAAAGA 1692 |||| |||||| ||||||||| |||||||||||| | ||||||||||||||||||||||| Sbjct 413 GAGGTAAAAGAGATGTTGTTTCAGGATATTAAACAGGAGACTCATCATATTAACCAAAGA 354 Query 1693 TATTTACATTG 1703 ||||||||||| Sbjct 353 TATTTACATTG 343 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84186313965 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5