BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472886
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24610.1 | Symbols: | Rubisco methyltransferase family prot... 2601 0.0
AT1G24600.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 104 3e-21
> AT1G24610.1 | Symbols: | Rubisco methyltransferase family protein
| chr1:8720651-8722746 REVERSE LENGTH=1721
Length=1721
Score = 2601 bits (1408), Expect = 0.0
Identities = 1609/1707 (94%), Gaps = 9/1707 (1%)
Strand=Plus/Plus
Query 1 CGCTTCGTCGGAACTCATGGCCAATTCGAAAATGGCGATGGCTTCTCTGGCAGCTCAAAT 60
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 20 CGCTTCGTCGGAACTCATGGCCAATTCGAAAATGGCGATAGCTTCTCTAGCAGCTCAAAT 79
Query 61 TCGTCCCTTCACATGTTTGGCCGCGTCTCAGCCGTCGCGGTTGACGCCTCATCCACCAGA 120
|||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||
Sbjct 80 CCGTCCCTTCACATGTTTGGCCGCGTCTCTGCCGTCACGGTTGGCGCCTCATCCACCAGA 139
Query 121 CCTCATCCGGTGGATCAAACGAGAAGGTGGTTTCGTTCACCACGCCGTCAAGCTCTCTCA 180
|||||||||||||||||| |||||||| || |||||||||||||| || |||||||||||
Sbjct 140 CCTCATCCGGTGGATCAAGCGAGAAGGCGGCTTCGTTCACCACGCGGTTAAGCTCTCTCA 199
Query 181 GGAGACTCAATTTGGTATCGGACTCATTTCCACAGAGCAAATCTCTCCAGGCACCGACCT 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 200 GGAGACTCAATTTGGTATCGGACTCATTTCCACCGAGCAAATCTCTCCAGGCACCGACCT 259
Query 241 AATCTCTCTCCCTCCTCACGTTCCCTTACGCTTCGAATCAGATGATGCGTCATCGTCATC 300
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 260 AATCTCTCTCCCTCCTCACGTTCCCTTACGCTTCGAATCAGATGATTCGTCATCTTCATC 319
Query 301 GTCCTCTCTCCTCTCCGCATTGGCCCGTCGTGTTCCCGAAGAACTGTGGGCAATGAAATT 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 320 GTCCTCTCTCCTCTCCGCATTGGCCCGTCGTGTTCCTGAAGAACTGTGGGCAATGAAATT 379
Query 361 GGGATTGAGATTGTTACAAGAAAGAGCCAATGCAGATTCTTTCTGGTGGCCATACATCAG 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 380 GGGATTGAGGTTGTTACAAGAAAGAGCCAATGCAGATTCTTTCTGGTGGCCATACATTAG 439
Query 421 CAATCTCCCGGAAACTTTTACTGTTCCTATATTCTTTCCCGGAGAAGATATCAAGAACTT 480
||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 440 CAATCTCCCGGAAACTTATACTGTTCCCATATTCTTTCCCGGAGAAGATATCAAAAACTT 499
Query 481 GCAATATGCCCCTCTTCTTTACCAGGTCAATAAAAGATGCCGTTTTCTTCTTGAGTTTGA 540
||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 500 GCAATATGCTCCTCTTCTCCACCAGGTCAACAAAAGATGCCGTTTTCTTCTTGAGTTTGA 559
Query 541 GCAAGAGATTAGACGCACTCTTGAAGATGTTAAGGCTAGTGATCATCCTTTCAGTGGCCA 600
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 GCAAGAGATTAGACGTACTCTTGAAGATGTTAAGGCTAGTGATCATCCTTTCAGTGGCCA 619
Query 601 AGATGTAAATGCATCCGCTCTCGGGTGGACTATGTCAGCTGTTTCCACTAGAGCGTTTCG 660
||||||||||||||| || || ||||||||||||||||||||||| ||||||||||||||
Sbjct 620 AGATGTAAATGCATCTGCCCTAGGGTGGACTATGTCAGCTGTTTCAACTAGAGCGTTTCG 679
Query 661 CTTACATGGTAATAAAAAGCTTCAAGGTGGATCTTCTGATGATGTTCCCATGATGCTTCC 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 TTTACATGGTAATAAAAAGCTTCAAGGTGGATCTTCTGATGATGTTCCCATGATGCTTCC 739
Query 721 TCTGATAGATATGTGCAACCACAGCTTTAAACCAAATG-TCAGGATCATTCAAGAACAGA 779
| ||||||||||||||||||||||||| ||||| |||| || ||||||||||||||||||
Sbjct 740 TTTGATAGATATGTGCAACCACAGCTTCAAACCTAATGCTC-GGATCATTCAAGAACAGA 798
Query 780 ACGGAGCTGACTCAAATACTCTAGTTAAGGTTGTTGCAGAGACTGAAGTCAAAGTAAACG 839
||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 799 ACGGAGCTGACTCTAATACTCTTGTTAAGGTTGTTGCAGAGACTGAAGTCAAAGAAAACG 858
Query 840 ATCCTTTGCTACTCAACTATGGCTGCCTTAGCAATGAtttttttCTTTTGGACTATGGAT 899
||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| ||||
Sbjct 859 ATCCTTTGCTACTTAACTATGGTTGCCTTAGTAATGATTTTTTCCTTTTGGACTACGGAT 918
Query 900 TTGTGATTGAATCAAATCCATACGACACCATTGAGCTTAAATACGATGAACAGCTCATGG 959
||||||| ||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 919 TTGTGATCGAATCAAATCCATACGATACAATTGAGCTTAAATACGATGAACAGCTTATGG 978
Query 960 ACGCTGCAAGCATGGCGGCTGGTGTTTCTTCCCCAAAGTTCTCTTCACCGGCTCCATGGC 1019
| || || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 979 ATGCGGCTAGCATGGCGGCTGGTGTTTCTTCCCCAAAATTCTCTTCACCAGCTCCATGGC 1038
Query 1020 AACATCAGCTGCTTTCCCAGTTAAATTTAGCCGGAGAAATGCCAAATCTGAAGGTAACCA 1079
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1039 AACATCAGCTGCTTTCCCAGTTAAATTTAGCCGGGGAAATGCCAAATCTGAAGGTAACCA 1098
Query 1080 TAGGAGGCCCAGAGCCAGTAGAGAGACGACTATTGGCAGCCATAAGGATACTGCTTTGTG 1139
| ||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 1099 TTGGAGGCCCAGAGCCAGTAGAGGGACGACTATTGGCGGCGTTAAGGATACTGCTTTGTG 1158
Query 1140 GTGAATTGGTGAAAGTTGAGAAGCATGACTTAGACACACTGAAATCTTTATCGGCCATAG 1199
||||| ||||| |||| ||||||||||||| |||||| |||||||||||||| ||| |||
Sbjct 1159 GTGAACTGGTGGAAGTAGAGAAGCATGACTCAGACACGCTGAAATCTTTATCCGCCGTAG 1218
Query 1200 CCCCTCTTGGAATTGCAAACGAGATTGCGGTTTTCCGCACTGTAATCGCCCTTTGTGTGA 1259
||||| |||||||||||||||||||||| |||||||| ||||||||||| || |||||||
Sbjct 1219 CCCCTTTTGGAATTGCAAACGAGATTGCCGTTTTCCGTACTGTAATCGCTCTGTGTGTGA 1278
Query 1260 TTGCATTGAGCCACTTTCCGACAAAGATAATGGAAGATGAGGCTATAATCAAACAAGGTG 1319
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1279 TTGCATTGAGCCATTTTCCGACAAAAATAATGGAAGATGAGGCTATAATCAAACAAGGTG 1338
Query 1320 TTTCAGCCACATCAGAATTGAGTATCAAGTACCGAATCCAGAAGAAATCAGTGATCATAG 1379
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 TTTCAGCCACAGCAGAATTGAGTATCAAGTACCGAATCCAGAAGAAATCAGTGATCATAG 1398
Query 1380 ATGTCATGAAAGACCTCACCAGAAGGGTTAAGTTGCTATCGTCTAAGGAGACACCAACTG 1439
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1399 ATGTCATGAAAGACCTCACCAGAAGGGTTAAGTTGCTATCTTCTAAGGAGACACCAACTG 1458
Query 1440 CTGCATAAGAACCATCTCCTGTAAGTTCTCTAGGCTTGGCTTGTTTCAAACGTCAATTTT 1499
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1459 CTGCATAAGAACCACCTCCTGTAAGTTCTCTAAGCTTGGCTTGTTTCAAACGTCAATTTC 1518
Query 1500 CAAGATGACT-TGTTTAAGGTTAATAATTCTGAAAAACATATAGCGATCGA-TATTTCTC 1557
|||||||| | |||||||||||| | ||| ||||||||||||| ||| | | ||||||||
Sbjct 1519 CAAGATGAGTATGTTTAAGGTTATTCATTTTGAAAAACATATACCGACC-ACTATTTCTC 1577
Query 1558 TATGAACTAGC-TGGTTTCCCTCCTCAAGGATTAGATTACATGAATCTATGAACTAGAGA 1616
||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1578 TATTAACTAGCAT--TTTCA-TCCTCAAGGATTAGATTACATGAATCTATGAACTAGAGA 1634
Query 1617 AGGGTGATTAAAATGAGAGGCAAAAGATATGTTGTTTGAGGATATTAAACCGAAGACTCA 1676
|||| ||||||||||||||| |||||| ||||||||| |||||||||||| | |||||||
Sbjct 1635 AGGGAGATTAAAATGAGAGGTAAAAGAGATGTTGTTTCAGGATATTAAACAGGAGACTCA 1694
Query 1677 TCATATTAACCAAAGATATTTACATTG 1703
|||||||||||||||||||||||||||
Sbjct 1695 TCATATTAACCAAAGATATTTACATTG 1721
> AT1G24600.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G67920.1);
Has 18 Blast hits to 18 proteins in 5 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8720309-8720721
FORWARD LENGTH=413
Length=413
Score = 104 bits (56), Expect = 3e-21
Identities = 66/71 (93%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 1633 GAGGCAAAAGATATGTTGTTTGAGGATATTAAACCGAAGACTCATCATATTAACCAAAGA 1692
|||| |||||| ||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 413 GAGGTAAAAGAGATGTTGTTTCAGGATATTAAACAGGAGACTCATCATATTAACCAAAGA 354
Query 1693 TATTTACATTG 1703
|||||||||||
Sbjct 353 TATTTACATTG 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84186313965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5