BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472890
Length=453
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24575.1 | Symbols: | unknown protein; Has 7 Blast hits to ... 667 0.0
> AT1G24575.1 | Symbols: | unknown protein; Has 7 Blast hits to
7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:8711036-8711528 REVERSE LENGTH=493
Length=493
Score = 667 bits (361), Expect = 0.0
Identities = 429/459 (93%), Gaps = 16/459 (3%)
Strand=Plus/Plus
Query 1 TCCAAATAAGAAAGAGCTAGTTTAAGAATGGTACTTGGAAACTCCTCCAGTTCTGGTCAC 60
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 25 TCCAAACAAGAAAGAGCTAGTTTAAGAATGGTACTTGGAAACTCCTCCA------GTCAC 78
Query 61 AAATCtcatcatcatc-ac--cataatcatcatcatcGGGACTCGATGAAGGAGTTCCAA 117
||||||||||| |||| || |||||||||||||| |||||||||||||||||||||| |
Sbjct 79 AAATCTCATCACCATCAACATCATAATCATCATCACCGGGACTCGATGAAGGAGTTCCGA 138
Query 118 GCTGTCTTTGCAGCCGAAGAACCTATCCAGGGCTTCGAGTATGCAGATATGAGGAGGTCA 177
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 139 GCTGTCTTTGCAGCCGAAGAACCAATCCAGGGCTTCGAGTATGCAGATATGAGGAGGTCA 198
Query 178 AAGAGCGAGAATATGGGCACGAGAGAGGTTGCAAAAGCAGAGGATGTTGACAAAGAAGCT 237
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 199 AAGAGCGAGAATATGGGCACTAGAGAGGTTGCAAAAGCAGAGGATGTTGACAAAGAAGCT 258
Query 238 GAGCAATTCATCAAGTTTGAGCATACGAAGTTCAGTAAGTGGATGACTAAGAGCGCCTAG 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 GAGCAATTCATCAAGTTTGAGCATACGAAGTTCAGTAAGTGGATGACTAAGAGCGCCTAG 318
Query 298 -CGTATGTGGACGAAGAATAAGAAA-TAATAAGTGACATACCATAATATATAGATTGTAT 355
| |||||||||||||||||| ||| |||||| ||||| |||||||||||||||||||||
Sbjct 319 TC-TATGTGGACGAAGAATAA-AAAGTAATAAATGACAAACCATAATATATAGATTGTAT 376
Query 356 TAAATGATTTGTGTTCTGTTCTTCCTG-TATTTATTTTGGTTATGTAACAAAATGGGTGT 414
| |||||||||||| | |||||| || | |||||||| ||||||||||||||||||||
Sbjct 377 TGTATGATTTGTGTT-TCTTCTTC-TGGTTTTTATTTTTGTTATGTAACAAAATGGGTGC 434
Query 415 TGTTTCCTTTGTCTAGAAAGGTGCATGGAAATAAAGACT 453
|||||||||||||||||||||||||||||||||||||||
Sbjct 435 TGTTTCCTTTGTCTAGAAAGGTGCATGGAAATAAAGACT 473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21564864321
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5