BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472896
Length=1804
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24510.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 2940 0.0
AT1G67760.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 195 2e-48
> AT1G24510.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr1:8685271-8688227 REVERSE LENGTH=1967
Length=1967
Score = 2940 bits (1592), Expect = 0.0
Identities = 1740/1811 (96%), Gaps = 11/1811 (1%)
Strand=Plus/Plus
Query 1 AAATCTTCCAGACATTCTTCTTCTCGtttttttCCCCATTTCTACttttttttttCCTCT 60
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1 AAATCTTCCAGACATTCTTCTTCTCGCTTTTTTCCCCATTTCAACTTTTTTTTTTCCTCT 60
Query 61 CTAGTGTAGTAGG--a-aaaaaaaaCCCAAGATCTGTAGTTCGATCGGATCGAGAAG-AG 116
| |||| | |||| | |||||||||||||||||| |||||||||||||||||| || ||
Sbjct 61 CCAGTGCACTAGGAAACAAAAAAAACCCAAGATCTATAGTTCGATCGGATCGAG-AGAAG 119
Query 117 CTCGAAAATGGCGCTGGCGTTCGATGAGTTCGGGCGTCCGTTCATTATACTAAGAGAGCA 176
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 CTCGAAAATGGCGCTGGCGTTCGATGAGTTCGGGCGTCCGTTCATTATACTGAGAGAGCA 179
Query 177 AGATCAAAAGACGCGTCTTAGAGGAATCGATGCTCAGAAAGCCAATATCGCCGCCGGGAA 236
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 180 AGATCAAAAGACTCGTCTTAGAGGAATCGATGCTCAGAAAGCCAATATCGCCGCTGGTAA 239
Query 237 AGCCGTGGCTCGGATCCTTCGATCTTCTCTTGGACCCAAAGGAATGGACAAGATGCTTCA 296
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 240 AGCCGTGGCTCGGATCCTTCGATCCTCTCTTGGACCCAAAGGAATGGATAAGATGCTTCA 299
Query 297 AGGACCTGACGGAGACATCACCATCACAAACGATGGTGCTACCATCTTGGAGCAAATGGA 356
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 300 AGGACCTGACGGAGACATCACCATCACAAACGATGGTGCTACGATATTGGAGCAAATGGA 359
Query 357 TGTTGACAACCAGATTGCTAAACTTATGGTGGAACTGTCGCGGAGTCAGGATTATGAAAT 416
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 TGTTGACAACCAGATTGCGAAACTAATGGTGGAACTGTCGCGGAGTCAGGATTATGAAAT 419
Query 417 TGGTGATGGAACAACAGGTGTTGTTGTTATGGCTGGTGCACTTCTGGAGCAAGCTGAACG 476
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 TGGTGATGGAACAACAGGTGTTGTTGTTATGGCTGGTGCACTTCTTGAGCAAGCTGAACG 479
Query 477 TCAGTTAGATAGAGGAATTCATCCCATCCGTATTGCTGAAGGGTATGAGATGGCTTCTAG 536
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 480 TCAGTTAGATAGAGGAATTCATCCCATTCGTATTGCTGAAGGATATGAGATGGCTTCTAG 539
Query 537 GGTGGCTGTTGACCATTTGGAGCGTATTGCTCAAAAGTTTGAATTCGACGTTAATAATT- 595
|||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 540 GGTGGCTGTTGAGCATTTGGAGCGTATTGCCCAAAAGTTTGAATTCGATGTTAATAATTA 599
Query 596 TCGAGCCCCTGGTTCAGACATGCATGACTACTCTCTCCTCTAAGATTGTGAATCGATGCA 655
| ||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct 600 T-GAGCCTCTGGTTCAGACTTGCATGACTACTCTGTCCTCGAAGATTGTGAATCGATGCA 658
Query 656 AGCGTAGCTTAGCTGAGATTGCTGTTAAAGCGGTTCTTGCTGTTGCTGATTTAGAGAGGA 715
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGCGCAGCTTAGCTGAGATTGCTGTTAAAGCGGTTCTTGCTGTTGCTGATTTAGAGAGGA 718
Query 716 GGGATGTTAATTTAGATCTGATCAAAGTAGAAGGGAAAGTTGGGGGAAAGTTGGAGGACA 775
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 719 GGGATGTTAACTTAGATCTGATCAAAGTAGAGGGGAAAGTTGGGGGAAAGTTGGAGGACA 778
Query 776 CTGAGCTTATTTATGGAATACTGATTGACAAAGACATGAGTCATCCGCAAATGCCAAAGC 835
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 779 CTGAGCTTATTTATGGAATACTGATTGACAAAGATATGAGTCATCCGCAAATGCCAAAGC 838
Query 836 AGATTGAAGATGCCCACATTGCCATTTTGACTTGTCCCTTTGAGCCACCGAAGCCGAAGA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 AGATTGAAGATGCCCACATTGCCATTTTGACTTGTCCCTTTGAGCCACCGAAGCCGAAGA 898
Query 896 CTAAGCATAAGGTGGACATTGACACAGTGGAGAAGTTTGAGACATTGCGCAAGCAAGAGC 955
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 899 CTAAGCATAAGGTGGACATTGATACAGTGGAAAAGTTTGAGACATTGCGCAAGCAAGAGC 958
Query 956 AGCAATATTTCGATGAGATGGTTCAAAAGTGCAAGGATGTTGGTGCTACACTGGTTATTT 1015
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 959 AGCAATATTTCGATGAGATGGTACAAAAGTGCAAGGATGTTGGTGCTACGCTGGTTATTT 1018
Query 1016 GCCAATGGGGATTTGATGATGAGGCAAACCATCTATTGATGCACAGGAATTTGCCTGCTG 1075
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GCCAATGGGGATTCGATGATGAGGCAAACCATCTATTGATGCACAGGAATTTGCCTGCTG 1078
Query 1076 TCAGATGGGTCGGGGGTGTTGAATTAGAACTTATTGCAATAGCCACAGGCGGTAGAATTG 1135
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1079 TCAGATGGGTAGGGGGTGTTGAATTAGAACTTATCGCAATAGCCACAGGCGGTAGAATTG 1138
Query 1136 TTCCAAGATTCCAGGAGTTGACTCCAGAGAAGTTAGGCAAGGCTGGCGTGGTTCGTGAGA 1195
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1139 TTCCAAGATTCCAGGAGTTGACCCCAGAGAAGTTAGGGAAGGCTGGCGTGGTTCGTGAGA 1198
Query 1196 AATCATTTGGCACTACAAAAGAACGAATGCTGTATATTGAGCACTGTGCGAATTCGAAAG 1255
|||| |||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1199 AATCTTTTGGCACAACAAAAGAACGAATGCTGTATATTGAGCACTGTGCGAACTCAAAAG 1258
Query 1256 CTGTCACTGTTTTCATCCGTGGAGGTAACAAAATGATGATAGAAGAGACGAAGCGTAGTA 1315
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1259 CTGTCACTGTTTTCATCCGTGGAGGTAACAAAATGATGATAGAAGAGACGAAACGTAGTA 1318
Query 1316 TCCACGATGCCCTGTGTGTGGCTAGGAATCTAATCCGCAACAAATCAATTGTATATGGAG 1375
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1319 TCCACGATGCTCTGTGTGTGGCTAGGAATCTCATCCGCAACAAATCAATTGTTTATGGAG 1378
Query 1376 GTGGTGCAGCTGAAATCGCTTGCTCCCTTGCGGTTGATGCAGCTGCTGATAAATACCCTG 1435
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1379 GTGGGGCAGCTGAAATCGCTTGCTCACTTGCGGTTGATGCAGCTGCTGATAAATACCCTG 1438
Query 1436 GCGTTGAGCAGTATGCAATTAGGGCGTTTGCAGAAGCTTTGGACTCTGTCCCTATGGCTC 1495
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GCGTGGAGCAGTATGCAATTAGGGCGTTTGCAGAAGCTTTGGACTCTGTCCCTATGGCTC 1498
Query 1496 TTGCAGAGAACAGTGGATTGCAGCCCATTGAGACACTCTCTGCGGTTAAATCTCAGCAAA 1555
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TTGCAGAGAACAGTGGATTACAGCCCATTGAGACACTCTCTGCGGTTAAATCTCAGCAAA 1558
Query 1556 TTAAGGAGAATATTCCCTTCTATGGGATAGATTGCAATGACGTGGGAACAAACGATATGA 1615
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1559 TTAAGGAGAATATTCCCTTCTATGGAATAGATTGCAATGACGTGGGAACAAACGATATGA 1618
Query 1616 GGGAGCAAAATGTGTTTGAAACATTGATTGGGAAACAGCAGCAAATTTTGCTAGCTACGC 1675
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1619 GGGAGCAAAATGTGTTTGAAACATTGATCGGGAAACAGCAACAAATTTTGCTAGCTACGC 1678
Query 1676 AAGTCGTTAAGATGATTCTAAAGATCGACGATGTCATCTCCAATTCTGAATACTGATGTG 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1679 AAGTCGTTAAGATGATTCTAAAGATCGACGATGTCATCTCCAATTCTGAATACTGATTTG 1738
Query 1736 TTGCTACCTCTGTA--AACTCTTTGGCTTCTTGGGTGTTTTTTAGTTTGCTTTCTGTTAG 1793
||||||||| ||| ||| |||||||||||| |||||||||| ||||||||||| ||||
Sbjct 1739 TTGCTACCTTTGTCCTAAC-CTTTGGCTTCTTCGGTGTTTTTT-GTTTGCTTTCTATTAG 1796
Query 1794 CTTTTGGTACC 1804
|||||| ||||
Sbjct 1797 CTTTTGATACC 1807
> AT1G67760.1 | Symbols: | TCP-1/cpn60 chaperonin family protein
| chr1:25405580-25406372 REVERSE LENGTH=697
Length=697
Score = 195 bits (105), Expect = 2e-48
Identities = 170/201 (85%), Gaps = 6/201 (3%)
Strand=Plus/Plus
Query 124 ATGGCGCTGGCGTTCGATGAGTTCGGGCGTCCGTTCATTATACTAAGAGAGCAAGATCAA 183
||||| |||| ||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 101 ATGGCTTTGGCTTTCGATGAGTTTGGCCGGCCGTTCATTATACTAAGAGAGCAAGATCAA 160
Query 184 AAGACGCGTCTTAGAGGA-ATCGATGCTCAGAAAG-CCAATATCGCCGCCGGGAAAGCCG 241
||||| ||||||| ||| ||||||||||| |||| |||| || |||| || ||||| |
Sbjct 161 AAGACTCGTCTTA-AGGGCATCGATGCTCA-AAAGGCCAACATTTCCGCTGGTAAAGCAG 218
Query 242 TGGCTCGGATCCTTCGATCTTCTCTTGGACCCAAAGGAATGGACAAGA--TGCTTCAAGG 299
|||||||||| || ||||| ||||| || ||||| || ||||| || | ||||||||||
Sbjct 219 TGGCTCGGATTCTCCGATCCTCTCTCGGTCCCAAGGGCATGGAAAAAAAATGCTTCAAGG 278
Query 300 ACCTGACGGAGACATCACCAT 320
|||||||||||| |||||||
Sbjct 279 ACCTGACGGAGATGTCACCAT 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89256569010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5