BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472900
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24480.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1146 0.0
> AT1G24480.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr1:8676360-8677159
REVERSE LENGTH=800
Length=800
Score = 1146 bits (620), Expect = 0.0
Identities = 708/751 (94%), Gaps = 4/751 (1%)
Strand=Plus/Plus
Query 1 ATGAAGCAACCAAAGCCGATTCTGAAATACGtcttggtctctatcttcctcagtctccct 60
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1 ATGAAGCAACCAAAGCCGATTCTGAAATACGTCTTAGTCTCTATCTTCCTCACTCTCCCT 60
Query 61 ctcattctcttcttctctATACAAGTACGTAAACCCGAAAAAGAACTCATCAGGATCCGA 120
||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 CTCATCCTGTTCTTCTCTATACAACTACGTAAACCCGAAAAAGAACTCATCAGGATCCGA 120
Query 121 CCCGGTTACACGTCTTACGATTACTACATCCAACGACAGCTCAACAAAACACTTAACCCC 180
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 CCAGGTTACACGTCTTACGATTACTACATCCAACGACAGCTCAACAAAACGCTTAACCCT 180
Query 181 AGGCTACGTACAATATGGATGACACGAGATTGGGACCGTAAGATCAAAGTGTTCTCAAGA 240
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 AGGCTTCGTACGATATGGATGACACGAGACTGGGACCGTAAGATCAAAGTGTTCTCAAGA 240
Query 241 TTCTTCCAAGATCTGAAACGTCAAGGCCTCTTATCCAACGACTCTAAATGTCTCTGTGTC 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 241 TTCTTCCAAGATCTGAAACGTCAAGGCCTCTTATCCAAAGACTCTAAATGTCTCTGCCTC 300
Query 301 GGAGCTCGAGTCGGGCAAGAAGTGGAGGCCCTGAAACGTGTAGGCGTAAACGACTCGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAGCTCGAGTCGGGCAAGAAGTGGAGGCCCTGAAACGTGTAGGCGTAAACGACTCGGTG 360
Query 361 GGAATGGATCTGGTGCCGTATCCCCCGTTGGTGGTCAAAGGAGACTTTCATCACCAGCCG 420
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 361 GGAATGGATCTGGTGCCATATCCGCCGTTGGTGGTCAAAGGTGACTTTCATCACCAGCCG 420
Query 421 TTCGATGATGAGACTTTTGATTTTGAATTCTCCAACGTGTTTGATCATGCACTTTATCCG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCGATGATGAGACTTTTGATTTTGAATTCTCCAACGTGTTTGATCATGCACTTTATCCG 480
Query 481 GACAAGTTTGTTGGAGAGATCGAACGGACACTGAGACATGGAGGTTTATGTGTTTTACAC 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 GACAAGTTTGTTGGAGAGATCGAACGGACACTGAGACCTGGAGGTTTATGTGTTTTACAC 540
Query 541 GTGGCTCTTTCTACACGGTCGGATAAGTATTCAGCCAATGATCTGTACAGTGTGGAGGCA 600
|||||||| |||||||| |||||||||||||||||||||||||| | |||||||||||||
Sbjct 541 GTGGCTCTCTCTACACGATCGGATAAGTATTCAGCCAATGATCTCTTCAGTGTGGAGGCA 600
Query 601 TTGGTGAAGCTGTTTCGACGATCGGAGGTCGTTCATGTCAGAAATGTCGACGGCTTCGGG 660
|||||||| || || |||| ||||||||| |||||||| |||||||| |||||||| |||
Sbjct 601 TTGGTGAAACTATTCCGACAATCGGAGGTGGTTCATGTAAGAAATGTGGACGGCTTTGGG 660
Query 661 TTGGATACGGAGGTCGTGTTTAGGAAGAAAAGGGAGTCATCCATACTAGTCCGGTCTTGA 720
|||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 661 TTGGATACAGAGGTCGTGTTTAGGAAGAAAAGGGATTCATCCATCCTAGTTCGGTCTTGA 720
Query 721 TTTTTTATGTCACGTACATCGAAATATTATT 751
|| || ||| ||||| | |||||| |||
Sbjct 721 ATTATT-TGTTTCGTACTT--AAATAT-ATT 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5