BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472901
Length=1042
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24470.1 | Symbols: KCR2, ATKCR2 | beta-ketoacyl reductase 2... 1600 0.0
> AT1G24470.1 | Symbols: KCR2, ATKCR2 | beta-ketoacyl reductase
2 | chr1:8674056-8676408 FORWARD LENGTH=1070
Length=1070
Score = 1600 bits (866), Expect = 0.0
Identities = 974/1024 (95%), Gaps = 16/1024 (2%)
Strand=Plus/Plus
Query 1 ATGCAGAGAGCATGCATCTCCGAGAGTCAGCCATGGCATCTCCATGTCGTATGCTTCATA 60
|||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1 ATGCAGGGAGCATGCATCTCCGAGAGTCAGCCATGGTATCTCCATTTCGTATGCTTCATA 60
Query 61 GGCTTTCTCTCTCTCCTTAGATTACTATTCATTCCTCTCCTAAAATGGTTCATCACCAGA 120
|||||||||| |||||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 61 GGCTTTCTCTTTCTCCTTAGAGTACTATTCATTCCTCTCCTAAAATGGTTCACCACAAGA 120
Query 121 TTCCTCCTCACAAACCCCAAGCGGCTCAAGCGGTACGGCTCATGGGCTATGGTCACTGGA 180
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCCTCCTCAC--A-CCCAAGCGGCTCAAGCGGTACGGCTCATGGGCTATGGTCACTGGA 177
Query 181 GCCACCGAGGGGATCGGACGTGCCTTTGCTTACGAGCTGGCCAAACACGGCCTTAACCTC 240
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 178 GCCACCGAGGGGATCGGACGCGCCTTTGCTCACGAGCTGGCCAAACACGGCCTTAACCTC 237
Query 241 ATCCTAGTCAGCAGAAACCTTTCGAAGCTCGAATATGTCTCTGATGATTTCCAACAAGAG 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 238 ATCCTAGTCAGCAGAAACCTTTCGAAGCTCGAATCTGTCTCTGATGATTTCCAACAAGAG 297
Query 301 TTTCCCCATATCAAGATCAAGATCATTCCATTTGACTTCTCCTCTGAAGGAGGATATGGA 360
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 298 TTTCCCCACATCAAGATCAAGATCATTCCATTTGACTTCTCCTCTGAAGGAGGATACGGA 357
Query 361 GCAATCGAGGAAGGGATAAAAGGCCTTGAAGTTGGGATTTTGATAAACAACGTCGGTATT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 GCAATCGAGGAAGGGATAAAAGGCCTTGAAGTTGGGATTTTGATAAACAACGTTGGTATT 417
Query 421 ACTTATCCACGGGCCATGTTCTTCCACGAGGTTGACCAACTTACATGGACCAAAATCCTG 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACTTATCCACGCGCCATGTTCTTCCACGAGGTTGACCAACTTACATGGACCAAAATCCTG 477
Query 481 AGGGTTAATCTTGAAGCCACCACTTGGGTCACACGATCACTCATCGGGCCAATGCTTCAC 540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 AGGGTTAATCTTGAAGCCACCACTTGGGTCACACGATCACTCATCGGACCAATGCTTCAC 537
Query 541 CGCCGCCGAGGAGCCATCGTCAATATTAGCTCCGGTGCTGCCGTTGTTGTCCCTTCTCAT 600
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 538 CGCCGCCGTGGAGCCATCGTCAATATTAGCTCCGGCGCTGCCGTTGTTGTCCCTTCTCAT 597
Query 601 CCTCTCTACGCCATCTACGCCGCCACCAAAGCTTATGTTGATGCACTATCAAGATCTCTA 660
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 598 CCCCTCTACGCCATCTACGCTGCCACCAAAGCTTATGTGGATGCACTATCAAGATCTCTA 657
Query 661 CATGTGGAATATAAGCAGTTTGGTATTGATGTCCAGTGCCAGGTGCCCTTATACGTAG-C 719
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 658 CATGTGGAATATAAGCAGTTTGGTATTGATGTCCAGTGCCAGGTTCCCTTATACGT-GTC 716
Query 720 AACAAGGATGGTGTCAGAAGTGGCAGCTATAGACAAACCAAGCTTCTTTGTACCGTCGCC 779
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 717 AACAAGGATGGTGTCAGAAGTGGCAGCTATAGACAAACCTAGCTTATTTGTACCGTCGCC 776
Query 780 TGAAGTCTACGCAAAAGCGGCGGTGGAACAGATCGGAATTGGATCTCGTTGCTCGCCGTT 839
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 777 TGAAGTCTACGCAAAAGCGGCGGTGGCGCAGATCGGAATTGGATCACGTTGCTCGCCGTT 836
Query 840 TTGGGCTCATTCCCTTCAGTGGTTTCTTGTCGGATTTGTGCCGGATAGCCTCGTTGATAC 899
|||||||||||| ||||||||||||||||| ||| |||| ||||||| ||| ||||||||
Sbjct 837 TTGGGCTCATTCTCTTCAGTGGTTTCTTGTTGGACTTGTACCGGATAACCTTGTTGATAC 896
Query 900 TTGGCGTCTCTCTATCGGACTTCGCAGAAGAAGTTAATTATCTTAAAATGCTTATGATCA 959
||||||||||||||||||||||||||||||||||| | ||||||| || || || |
Sbjct 897 TTGGCGTCTCTCTATCGGACTTCGCAGAAGAAGTT--T-ATCTTAA--TG---ATCAT-A 947
Query 960 TATTTCAAGTTTTTATTTGCTCCTCCACCTTTCGTGGGATAAATATATGGCCCATTGGGC 1019
| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 948 T-TTTCAAGTTTGTATTTGCTCCTCCACCTTTCGTGG-ATAAATATATGGCCCATTGGGC 1005
Query 1020 CTGA 1023
||||
Sbjct 1006 CTGA 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51088127499
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5