BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472903
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24450.1 | Symbols: NFD2 | Ribonuclease III family protein |... 937 0.0
> AT1G24450.1 | Symbols: NFD2 | Ribonuclease III family protein
| chr1:8664153-8665289 FORWARD LENGTH=836
Length=836
Score = 937 bits (507), Expect = 0.0
Identities = 619/671 (92%), Gaps = 15/671 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACTCTTCGTTTCACTCTACTTCTTCTTGTCGTT-GCCATCGGGATCTTCTCCTC 59
|||||||||||||||||||||||||||||||||||| || | | |||||||||||| |||
Sbjct 49 ATGGCGACTCTTCGTTTCACTCTACTTCTTCTTGTC-TTCGTCGTCGGGATCTTCTTCTC 107
Query 60 CTT-TTCTCAG-GT-TCAAGTTCAAGCAACAAGTGAAATCAATCTCAGGATCGAACCATT 116
||| | ||| | | ||| || | |||||||||||||||||||||||||||||||||||
Sbjct 108 CTTCTCCTCCGTTTCTCATGTACGTGCAACAAGTGAAATCAATCTCAGGATCGAACCATT 167
Query 117 TTCCTCGCCGTTCGCGACGGATCTTGCAACGCTGCAAACTCAAATTGGCTACAAGTTTAA 176
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 168 TTCCTCGCCGTTCGCGACGGATCTTGCAAAGCTGCAAACTCAAATTGGCTACAAGTTTAA 227
Query 177 CAACACCAACCTTCTTCGCCGTGCTATGACTCATGGTTCTTTTTCTCAAGAGAACAACAA 236
||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 228 CAACATCAACCTTCTTCGCCGTGCAATGACTCATGCTTCTTTTTCTCAAGAGAACAACAA 287
Query 237 AGCCTTGAGTATCTTTGGAACCAATATCATTGAAACCTCGGTCTCTCTTCAGTTACTCGC 296
|||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||
Sbjct 288 AGCCTTGAGTATCTTTGGAACCCATATCATTGAAACCGCGGTCTCTCTTCAGTTTCTCGC 347
Query 297 TAAAGATATCGATATCTCCTCGAAAGCTTTGAGCCGTTTGATAGCACAGGTTTCAAATGT 356
||||||||||||||| ||||||||||| || ||||||||||| || |||||||||||||
Sbjct 348 TAAAGATATCGATATTTCCTCGAAAGCACTGGGCCGTTTGATATCAGAGGTTTCAAATGT 407
Query 357 GGAGTCCTCTTGTGCTCTTGACGGAGACCGGTTGGGTTTGGGGAAGATAATTAGAGTTTC 416
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 408 GGAGTCCTCATGTGCTCTTGACGGAGACCGGTTGGGTTTGGGGAAGATAATCAGAGTTTC 467
Query 417 TACTAAGACAGATGCATCGAACTCGGCCATTCTTTGTGCTGGCTTCAGGGCAATCTTTGG 476
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 468 TACTAAGACAGATGCATCGAACTCGGCCATTCTTTGTACTGGCTTTAGGGCAATCTTTGG 527
Query 477 AGCTATTGCTATTGATGCTGGAATGGTTGATGAAGCCATCAAGGTTTTCTGGAAGGTACA 536
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 528 AGCTATAGCTATTGATGCTGGAACGGTTGATGAAGCCATCAAGGTTTTCTGGAAGGTACA 587
Query 537 TGGAGATAGAGCTGGAAGACTAGTGTCTATGTTGTAATTTAGAGCTGTAT---GT--T-A 590
||||| | |||||||||||||||| |||||||||||| |||||||| ||| || | |
Sbjct 588 TGGAGCTCGAGCTGGAAGACTAGTCTCTATGTTGTAAATTAGAGCTTTATTAAGTCATTA 647
Query 591 AAGTCTTGTTTTTTCGGATGCCAAGTTCTAAGAGACTCTTTCTTCTCCAAGGCTTAGAAT 650
||||| |||||||||||||||||||||||||||||||||| || | | || |||||||||
Sbjct 648 AAGTCATGTTTTTTCGGATGCCAAGTTCTAAGAGACTCTT-CT-C-C-AATGCTTAGAAT 703
Query 651 TATATGGTTGA 661
| |||||||||
Sbjct 704 TTTATGGTTGA 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5