BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472905
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24430.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1962 0.0
> AT1G24430.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr1:8658003-8659506 REVERSE LENGTH=1504
Length=1504
Score = 1962 bits (1062), Expect = 0.0
Identities = 1253/1344 (93%), Gaps = 17/1344 (1%)
Strand=Plus/Plus
Query 1 CATCATCTCTCTTTCCTTGATCAGCTTGCTCCACCTATCTTCATGCCTTTCCTTTTCTTT 60
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 88 CATCATCTCTCTTTCCTTGATCAGCTTGCTCCTCCCATTTTCATGCCTTTCCTTTTCTTT 147
Query 61 TACCATAACAAGACAAATCTCTCAGACAAAGAACGAAGTGATCACTTCAAGAGTTCCTTG 120
|||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| |||
Sbjct 148 TACCATAACAAGACTAATCTATCAGACAAAGAACGAAGTGATCACATCAAGAGTTCTTTG 207
Query 121 TCAGAAATATTGAATCTCTATTACCCCTTGGCAGGACGCATCAAGAACCCGGGTGATGTT 180
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 208 TCTGAAATATTGAATCTCTATTACCCCTTGGCAGGACGCATCAAGAACTCGGGTGATGTT 267
Query 181 GTTGTATGTAACGATATGGGTGTGTCTTTTGTCGAAGCCAAAGCCGATTGCAACATGTCA 240
||||| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 268 GTTGTGTGCAACGATGTGGGTGTGTCTTTCGTCGAAGCCAAAGCCGATTGCAACATGTCA 327
Query 241 CAGATTCTAGTAAACCCTAATCCCAATGAACTCAACAAGTTTCTTCCATTC-AAGTTTCA 299
|||||||||| |||||| ||||| || ||||| |||||| ||| ||||||| || || ||
Sbjct 328 CAGATTCTAGAAAACCCAAATCCTAACGAACTTAACAAGCTTCATCCATTCGAA-TTCCA 386
Query 300 TGAAGCGAGTGACGTGCCTCTAAGGGTACAGGTCACTTTCTTTGAATGTGGCGGCTTAGC 359
||||| ||||||||||||||| | ||||||| ||||||||||||||||||||||||||||
Sbjct 387 TGAAGTGAGTGACGTGCCTCTCACGGTACAGCTCACTTTCTTTGAATGTGGCGGCTTAGC 446
Query 360 ACTCGGAGTAGGCCTTTCTCATAAACTCTGTGATGC-CTTGTCCGGCCTCATCTTCATCA 418
||||||| |||||||||||||||||||||||||||| | |||| || ||||||||| |||
Sbjct 447 ACTCGGAATAGGCCTTTCTCATAAACTCTGTGATGCAC-TGTCTGGTCTCATCTTCGTCA 505
Query 419 AAAGTTGGGCAGCTTTTGCTCGTGGTGACACTAATGAAATCATTACTCCTTCTTTCGATC 478
| ||||||||||||||||||||||| | ||| |||||||||||||||||||||| ||||
Sbjct 506 ACAGTTGGGCAGCTTTTGCTCGTGGCCAGACTGATGAAATCATTACTCCTTCTTTTGATC 565
Query 479 TCGCCAAGATGTTTCCGTCC-TGTGATATGGAAAATC-TAAACATGGCTACAGGTATCAC 536
|||||||||||||||| ||| || || || ||||| | ||||||||||||||||||||||
Sbjct 566 TCGCCAAGATGTTTCC-TCCGTGCGACATAGAAAA-CTTAAACATGGCTACAGGTATCAC 623
Query 537 AAAGGAGAACGTAGTAACCAAACGCTTTGTGTTCTTGAAATCCTCTGTTGAGTCTTTAAG 596
||||||||| ||||||||| |||||| |||||||||| ||| |||||||||||||||||
Sbjct 624 GAAGGAGAACATAGTAACCAGACGCTTCGTGTTCTTGAGATCTTCTGTTGAGTCTTTAAG 683
Query 597 AGAAAGATTCAGCGGAAACAAGAAGATTCGCGCCACACGTGTTGAGGCCTTATCGGTATT 656
||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||
Sbjct 684 AGAAAGATTCAGCGGAAACAAGAAGATCCGCGCGACACGTGTTGAGGTCTTATCGGTATT 743
Query 657 CATATGGAGCCGTTTCATGGCTTCAACAAACCAAGATGATAAACCCGGAAAGATCTATAC 716
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 744 CATATGGAGCCGTTTCATGGCTTCAACAAACCATGATGATAAAACCGGAAAGATCTATAC 803
Query 717 ATTGATTCATCCAGTGAACTTGCGTAGACAAGCAGATCC-GTATATACCAGACAACATGT 775
| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 804 ACTGATTCATCCAGTGAACTTGCGTAGACAAGCAGATCCAG-ATATACCAGACAACATGT 862
Query 776 TCGGGAACATCATGAGGTTCTCTGTTACTGTCCCTAAGACGATAATCAATGAACATGATG 835
|||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 863 TCGGGAACATCATGAGGTTCTCTGTTACTGTCCCTATGATGATAATCAATGAAAATGATG 922
Query 836 AAGAAAAAGCTTCTCTTGTGGAGCAGATGAGAGAGGAGATTAGAAAGATTGATGCAGTGT 895
||||||| |||||||||||||| |||||||||||||||||||||||||| || ||||| |
Sbjct 923 AAGAAAAGGCTTCTCTTGTGGATCAGATGAGAGAGGAGATTAGAAAGATAGACGCAGT-T 981
Query 896 T-CGTGAAGAAACTTCAAGAAGATAACAGAGGACACCTAGAGTTTCTTAGCAAACAAGCT 954
| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 982 TACGTGAAGAAACTTCAAGAAGATAACAGAGGACACCTAGAGTTTCTAAACAAACAAGCT 1041
Query 955 TCAGGTTTTGTCAATGGAGAGATTGTGTCGTTCAGCTTCACGAGCCTCTGCAAATTTCCG 1014
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1042 TCAGGTTTTGTCAATGGAGAGATTGTATCGTTTAGCTTCACGAGCCTCTGCAAATTTCCG 1101
Query 1015 GTTTATGAAGCAGATTTCGGATGGGGGAAACCTTTGTGGGTTGCCTCTGCAAGAATGAGC 1074
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 GTGTATGAAGCAGATTTCGGATGGGGGAAACCTTTGTGGGTTGCCTCTGCAAGAATGAGC 1161
Query 1075 TACAAAAATCTTGTAGCGTTCATTGATACTAAGGAAGGTGATGGCATTGAGGCTTGGATC 1134
||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1162 TACAAAAATCTTGTAGCTTTCATTGATACTAAGGAAGGTGATGGAATTGAAGCTTGGATC 1221
Query 1135 AACCTTGACCAGAACGATATGTCTAGATTCGAAGCCGATGAGGAGTTGCTTCGCTATGTC 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 AACCTTGACCAGAACGATATGTCTAGATTCGAAGCCGATGAGGAGTTGCTTCGCTATGTC 1281
Query 1195 TCCTCAAACCCAAGTGTGATTGG-CTCTGCATCTTGAGAAACAAGTAATCTATAAGTCGT 1253
|| ||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct 1282 TCTTCAAACCCAAGTGTGAT-GGTCTCTGTATCTTGAGAAACAAGTAATCTATTAGTCGT 1340
Query 1254 TTCTAATGAGTTTGAGTTTGTTTTCCTTTTAACTTTGTCAATCAGATTTCATTCTCTTCT 1313
|||||||||||||||| ||||||||||||||| |||||| ||||||||||||| | ||
Sbjct 1341 TTCTAATGAGTTTGAGCTTGTTTTCCTTTTAAGTTTGTCTTTCAGATTTCATTC-C--CT 1397
Query 1314 TGTGCTTAATGCATTATTTTATAC 1337
||| ||||||||||| ||||||||
Sbjct 1398 TGTACTTAATGCATTCTTTTATAC 1421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65812914495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5