BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472906
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24420.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1917 0.0
> AT1G24420.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr1:8656687-8657997 FORWARD LENGTH=1311
Length=1311
Score = 1917 bits (1038), Expect = 0.0
Identities = 1225/1316 (93%), Gaps = 10/1316 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAAGAAAGTTGAGATCCTATCAAGAGAAATAATCAAACCGTCTTCTCCAACTCCA 60
||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGAGAAGAACGTTGAGATCTTATCAAGAGAAATAGTCAAACCGTCTTCTCCAACTCCA 60
Query 61 AATGATAAGAGAATTCTCAATCTCTCTCTTCTTGATGTACTCAGCTCACCGATGTACACA 120
||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 61 GATGATAAGAGAATTCTCAATCTCTCTCTTCTTGATATCCTCAGCTCACCAATGTACACA 120
Query 121 GGAGCACTTCTCTTTTACGCAGCGGATCCTCAAAACCTTTTAGG-TTTTGAATCAGAGGA 179
||||| ||||||||||||||||| |||||||| |||||| |||| |||| || |||||||
Sbjct 121 GGAGCTCTTCTCTTTTACGCAGCTGATCCTCAGAACCTTCTAGGTTTTTCAA-CAGAGGA 179
Query 180 GACATCCTTGAAGCTCAAGAAATCTCTGTCTGAAACTTTACCAATCTTCTACCCTCTTGC 239
||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 180 GACTTCCTTGAAGCTCAAGAAATCTCTGTCTAAAACCTTACCAATCTTCTACCCTCTTGC 239
Query 240 CGGAAGAATCATAGGAAGTTTCGTCGAATGTAATGATGAAGGAGCTGTGTTTATAGAAGC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CGGAAGAATCATAGGAAGTTTCGTCGAATGTAATGATGAAGGAGCTGTGTTTATAGAAGC 299
Query 300 TCGAGTTGACCATCTTCTCTCGGAGTTTCTCAAGTGCCCTGTTCCTGAATCATTGGAACT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 TCGAGTTGACCATCTTCTCTCGGAGTTTCTCAAGTGCCCTGTTCCTGAATCATTGGAATT 359
Query 360 ACTCATTCCTGTTGAAGCCAAGTCAAGAGAGGCAGTGACATGGCCTGTCTTGCTAATCCA 419
|||||||||||||||||| ||||||||||| || || ||||||||||| ||| |||||||
Sbjct 360 ACTCATTCCTGTTGAAGCTAAGTCAAGAGAAGCTGTTACATGGCCTGTGTTGTTAATCCA 419
Query 420 AGCCAGTTTCTTCAGCTGCGGAGGATTAGTTATCACAATTTGCATTTCTCATAAGATCAC 479
||| | |||||||||||| |||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 420 AGCTAATTTCTTCAGCTGTGGAGGATTGGTTATCACAATCTGCGTTTCTCATAAGATCAC 479
Query 480 TGATGCAACCTCTTTAGCCATGTTCATCAGAGGATGGTCTGAGTCCTCAAGAGGTTTGGG 539
|||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 TGATGCTACCTCTTTAGCAATGTTCATCAGAGGATGGGCTGAGTCCTCAAGAGGTTTGGG 539
Query 540 GATTACTTTGATTCCTAGTTTCACTGCTGCGGA-GTTCTTTCCTCTACCTA-TTGATGAG 597
|||||||||||||||||||||||| ||| | || || ||||||| ||| | ||||||||
Sbjct 540 GATTACTTTGATTCCTAGTTTCACCGCTTCTGAAGT-CTTTCCTAAACC-ACTTGATGAG 597
Query 598 CTTCCCTCAAAACCGATGGATCGCAAAGTCGAGGTTGAAGAGATGAGTTGTGTGACAAAG 657
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 CTTCCTTCAAAACCGATGGATCGCAAAGAAGAGGTTGAAGAGATGAGTTGTGTGACAAAG 657
Query 658 AGGTTTGTGTTTGATGCTTCAAAAATCAAGAAACTCAGAGCCGAAGTTTCAAGCAACCTT 717
|||||||||||||||||||| || ||||||||||| |||||| ||| |||||| ||||||
Sbjct 658 AGGTTTGTGTTTGATGCTTCGAAGATCAAGAAACTTAGAGCCAAAGCTTCAAGAAACCTT 717
Query 718 GTCAAGAATCCTACCCGTGTTGAAGCCGTCACAGCTCTGTATTGGAGATGCGTTACTAAG 777
|| |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 718 GTGAAGAATCCAACACGTGTTGAAGCCGTCACAGCTCTGTTTTGGAGATGCGTTACTAAG 777
Query 778 GCTTCAAGATCGAGTTCTCCAACACCAAGAACTTCGGTGCTGCAGATACTAGTGAGCCTA 837
| |||||||| |||||||| ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 778 GTTTCAAGATTGAGTTCTCTAACACCAAGAACTTCAGTGCTGCAGATACTAGTGAACCTA 837
Query 838 CGAGGAAAGGTAGATTCTTTGTGTGAAAACACAATTGGGAATATGCTTTCCCTCATAATT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 838 AGAGGAAAGGTAGATTCTTTGTGTGAAAACACAATTGGGAATATGCTTTCCCTCATGATT 897
Query 898 CTCAAGAACGAAGAAGCTAAGATAGATAGAATTCAAGATGTGGTTGATGAGCTAAG-ACG 956
|||||||||||||||||| ||| || |||||||||||||||||||||||| |||| | |
Sbjct 898 CTCAAGAACGAAGAAGCTGCGATTGAAAGAATTCAAGATGTGGTTGATGAGATAAGGA-G 956
Query 957 GGCAAAGGAAATCTTCAGCTTGAATTGCAAGGAGAAGTCGAAATCCTCGTCGAGAATTTT 1016
|||||||||||| ||||||||||| |||||||||| ||||||||| ||||| ||||||||
Sbjct 957 GGCAAAGGAAATATTCAGCTTGAACTGCAAGGAGATGTCGAAATCTTCGTCTAGAATTTT 1016
Query 1017 TGAGCTTTTGGAAGAGATTAGGAAAGTACATGGAAGAG-AAACTGAGGTGGACTTGTGGA 1075
||||||||||||||||||| |||||||| ||||||||| ||| |||| |||| |||||||
Sbjct 1017 TGAGCTTTTGGAAGAGATTGGGAAAGTATATGGAAGAGGAAA-TGAGATGGATTTGTGGA 1075
Query 1076 TGAGTAATAGCTGGTGTAAGCTCGGCATGTACGAGGCCGATTTCGGATGGGGAAAGCCGG 1135
|||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 1076 TGAGTAATAGCTGGTGTAAGCTCGGCTTGTACGATGCTGATTTCGGATGGGGAAAGCCGG 1135
Query 1136 TTTGGGTGACCGGAAGAGGCACTTCCAATTTCAAGAACTTGATGTTGTTGATTGATACCA 1195
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1136 TTTGGGTGACCGGAAGAGGCACTTCCCATTTCAAGAACTTGATGTTATTGATTGATACCA 1195
Query 1196 AAGATGGAGAAGGAATTGAAGCTTGGATCACTCTTACAGAAGAACACATGTCGCTGTTCG 1255
||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |
Sbjct 1196 AAGATGGAGAAGGAATTGAAGCTTGGATCACTCTTACGGAAGAACAAATGTCACTGTTTG 1255
Query 1256 AATGTGATCAAGAACTTCTTGAATCAGCTTCCCTGAATCCCCCTGTTTTAATCTAG 1311
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1256 AATGTGATCAAGAGCTTCTTGAATCAGCTTCCCTAAATCCCCCTGTTTTAATCTAG 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64507700325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5