BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg472907

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G24405.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   582    7e-166


> AT1G24405.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G67670.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr1:8655246-8655650 FORWARD LENGTH=405
Length=405

 Score =  582 bits (315),  Expect = 7e-166
 Identities = 378/406 (93%), Gaps = 13/406 (3%)
 Strand=Plus/Plus

Query  1    GAAGATGGATTCGGGACTATCATGGGCTGATCAATGGGATTACAACTCTGATCCTCCTCC  60
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  4    GAAGATGGATTCTGGACTATCATGGGCTGATCAATGGGATTACAACTCTGATCCTCCTCC  63

Query  61   AAATTCAAGTAACgaagacgat------aag-a-aa-aagaagaagaaggaagatggaag  111
            ||||||||||||||||||||||      ||| | || |||||||||||||||||||||||
Sbjct  64   AAATTCAAGTAACGAAGACGATAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAGATGGAAG  123

Query  112  caaaagCGGTATCGGGAAGGCCATACTTGGCTTCAAATGGATGAAACTTCGCAAGAAATC  171
            |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct  124  CAAAAGCGGTATCGGGAAGGCCATACTTGGATTCAAATGGATGAAACTTGGCAAGAAATC  183

Query  172  TGATAAGTGATCATTAGGTTATTTGTTTAGTTACGAAAGAGTTATTGATTCATCTGTTCC  231
            |||||||| |||| |||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct  184  TGATAAGTAATCAATAGGTTATTTGTTTAGTTACAAAAGGGTTATTGATTCATCTGTTCC  243

Query  232  TTGTGATTAATCCATTAAGTTATGCTTCTCTCTTTTACCCATTCTTCTGATTGTAATTGT  291
            ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct  244  TTGTGATTAATCCATTAAGTTCTGCTTCTCTCTTTTAACCATTCTTCTGATTGTAATTGT  303

Query  292  TAAATCTTTAACATTTAGAAAGTTTGTTGATTGCGGTTGATTGTGTCTTTATCTTTTTTG  351
            |||||||||||||||||||||||| |||| |||||||||||||||| ||||| ||||| |
Sbjct  304  TAAATCTTTAACATTTAGAAAGTTCGTTGGTTGCGGTTGATTGTGTATTTATATTTTT-G  362

Query  352  CTGGTGAGAATTTAATAGCAACCTGCAGGAATTGTGTTTTTGTTTT  397
             |||||||||||||||||| |||   ||||||||||||||||||||
Sbjct  363  TTGGTGAGAATTTAATAGCGACC---AGGAATTGTGTTTTTGTTTT  405



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18749870377


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5