BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472909
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24360.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1759 0.0
> AT1G24360.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr1:8640582-8643478 FORWARD LENGTH=1393
Length=1393
Score = 1759 bits (952), Expect = 0.0
Identities = 1112/1184 (94%), Gaps = 31/1184 (3%)
Strand=Plus/Plus
Query 1 TTTTTGAAAATCTATATATTACTATTGTTT-TGCAGAAA-T-AGACAAAATTAAGAC--T 55
||||||||| ||||||||||| |||||||| ||||||| | ||||||||||||||| |
Sbjct 103 TTTTTGAAATTCTATATATTATTATTGTTTGAGCAGAAACTAAGACAAAATTAAGACTTT 162
Query 56 T-T-TC-TC-TCTTCTCCACTGGGTCGATCTCTACGAGGTTCAC-T-T---GA---AC-- 101
| | || || ||||||||||||||||||||| |||||||||||| | | || ||
Sbjct 163 TCTCTCTTCTTCTTCTCCACTGGGTCGATCTTTACGAGGTTCACTTGTACGGATTCACTT 222
Query 102 -AAC--C-GATTCGCCATGGCCACCGCCGTCGCAGCACCGAGACTCATCTCCTTGAAAGC 157
||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 223 TAACAACAGATTCGCCATGGCCGCCGCCGTCGCAGCACCGAGACTCATCTCCTTGAAAGC 282
Query 158 CGCCGCGAAGCTAGGTTACCGTGAGATCTCTCAGGTCCGACAATGGGCTCCGCTTCACTC 217
|| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||
Sbjct 283 CGTCGCGAAGCTAGGTTTCCGTGAGATCTCTCAAATCCGACAATTGGCTCCGCTTCACTC 342
Query 218 TGCGATACCGCATTTCGGAATGCTACGATGTGGATCCCGACAGCCGTTTTCAACCTCTGT 277
||||||||| |||||||||||||| |||||| |||| || ||||||||||| ||||||||
Sbjct 343 TGCGATACCTCATTTCGGAATGCTGCGATGTAGATCGCGGCAGCCGTTTTCTACCTCTGT 402
Query 278 TGTGAAAGCTCAAGCGACTGCTACTGAGCAATCACCAGGCGAAGTTGTTCAAAAAGTGGA 337
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 403 TGTGAAAGCTCAAGCTACTGCTACTGAGCAATCACCAGGGGAAGTTGTTCAAAAAGTGGA 462
Query 338 ATCTCCAGTGGTCGTTATCACTGGTGCCTCTAGAGGGATTGGTAAAGCAATTGCTCTAGC 397
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 463 ATCTCCAGTGGTCGTTATCACTGGTGCCTCGAGAGGGATTGGTAAAGCAATTGCTCTAGC 522
Query 398 CTTGGGGAAAGCTGGCTGCAAGGTCCTGGTGAATTATGCTAGGTCAGCAAAGGAGGCTGA 457
|||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 523 CTTGGGTAAAGCTGGCTGCAAGGTCTTGGTGAATTATGCTAGGTCAGCAAAAGAGGCTGA 582
Query 458 AGAAGTTTCTAAACAGATTGAAGAATATGGTGGCCAGGCTATCACTTTTGGGGGTGATGT 517
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 AGAAGTTGCTAAACAGATTGAAGAATATGGTGGCCAGGCTATCACTTTTGGGGGTGATGT 642
Query 518 CTCGAAAGCGGCTGATGTGGATGCAATGATGAAAACAGCTCTTGATAAATGGGGAACCAT 577
|||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||
Sbjct 643 CTCGAAAGCGACTGATGTGGATGCGATGATGAAAACCGCTCTTGACAAATGGGGAACCAT 702
Query 578 TGATGTTGTGGTTAACAATGCAGGAATTACTCGGGATACCTTGTTAATACGAATGAAGCA 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TGATGTTGTGGTTAACAATGCAGGAATTACTCGGGATACCTTGTTAATACGAATGAAGCA 762
Query 638 ATCGCAATGGGACGAAGTAATTGCTTTGAATCTCACTGGTGTATTTCTCTGTACTCAGGC 697
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 763 ATCACAATGGGACGAAGTGATTGCTTTGAATCTCACTGGTGTATTTCTCTGTACTCAGGC 822
Query 698 AGCAGTAAAGATCATGATGAAGAAGAAAAA-GGGAAGAATCATCAATATCTCGTCAGTTG 756
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 823 AGCAGTAAAGATCATGATGAAGAA-AAAAAGGGGAAGAATCATCAATATCTCGTCAGTTG 881
Query 757 TTGGTCTCATTGGTAATATTGGTCAAGCAAACTACGCTGCAGCTAAAGGTGGAGTTATTG 816
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 882 TTGGTCTCATTGGTAATATTGGTCAAGCAAACTACGCAGCGGCTAAAGGTGGAGTTATTT 941
Query 817 CGTTTTCCAAGACT-ATAGCCAGAGAAGGTGCGAGCAGGAATATAAATGTCAATGCGGTT 875
|||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 942 CGTTTTCCAAGACTGCT-GCCAGAGAAGGTGCGAGCAGGAATATAAATGTCAATGTGGTT 1000
Query 876 TGCCCCGGATTCATTGCATCTGACATGACTGCCGAGCTTGGAGAAGACATGGAAAAGAAA 935
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1001 TGCCCCGGATTCATTGCATCTGACATGACTGCAGAGCTTGGAGAAGACATGGAAAAGAAA 1060
Query 936 ATCCTGGGAACAATCCCATTAGGACGGTATGGAAAACCGGAAGAAGTGGCTGGCTTGGTA 995
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1061 ATCCTGGGAACAATCCCATTAGGACGGTATGGAAAAGCTGAAGAAGTGGCTGGCTTGGTA 1120
Query 996 GAATTCTTGGCACTCAGTCCTGCAGCCAGTTACATAACCGGACAGGCATTCACCATTGAT 1055
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 GAATTCTTGGCTCTCAGTCCTGCAGCCAGTTACATAACCGGACAGGCATTCACCATTGAT 1180
Query 1056 GGAGGTATTGCTATCTAGACATTTGGTATGAGTCGGCTTTTGTTTAGTTAAAACAATTTG 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 GGAGGTATTGCTATCTAGACATTTGGTATGAGTCGGCTTTTGTTTAGTTAAAACAATTTG 1240
Query 1116 GTTAAACAGACAA-G---AGTTCTTTCTAGCACTTGGTCGGATT 1155
|| ||| |||||| | |||||||| |||||||||||||||||
Sbjct 1241 GTAAAAGAGACAAAGTTGAGTTCTTTTTAGCACTTGGTCGGATT 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5