BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472912
Length=2298
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24330.1 | Symbols: | ARM repeat superfamily protein | chr1... 3134 0.0
AT1G67530.1 | Symbols: | ARM repeat superfamily protein | chr1... 1469 0.0
AT1G15165.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 265 2e-69
AT1G15175.1 | Symbols: | other RNA | chr1:5222913-5224121 REVE... 233 5e-60
> AT1G24330.1 | Symbols: | ARM repeat superfamily protein | chr1:8631440-8635055
FORWARD LENGTH=2701
Length=2701
Score = 3134 bits (1697), Expect = 0.0
Identities = 1943/2061 (94%), Gaps = 20/2061 (1%)
Strand=Plus/Plus
Query 237 GAAAGCAAAATCTGCACTTATCAATAGTCTTAGACGCGTGGAGGACATTGTTCCTAGCTC 296
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct 438 GAAAGCAAAATCTGCACTTATCGATAGTCTTAGACGTGTGGAGGACATTGTTCCTAGTTC 497
Query 297 AATTGGGTCTCAGATTTTGGACATTGTTGGTGAACTAGAGCACACCAAGTTCTTACTTGA 356
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 498 AATTGGGTCTCAGATTTTGGACATTGTTGGTGAACTAGAGCACACCAAGTTCCTACTTGA 557
Query 357 TCTATCAGAGAAGGAAGTTGGTGATAGGATAATTGCACTATTGCAACAAGGGAAGAAATT 416
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 558 TCCATCAGAGAAGGAAGTTGGTGATAGGATAATTGCACTATTACAACAAGGGAAGAAATT 617
Query 417 TGACAACGGCAATGACAGCACCGAACTTGAAATTTTTCACCAGGCAGCTACTAGATTAAG 476
||||||||||| |||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 618 TGACAACGGCAGTGACAGTACCGAACTTGAAATTTTTCACCAGGCAGCTACTAGACTCAG 677
Query 477 TATAACTTCTTCTAGATCAGCTCTGGCGGAGCGGCGTGCTTTAAAGAAACTCATTGACAG 536
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 678 TATAACTTCTTCTAGATCAGCTCTGGCGGAGCGGCGTGCTTTAAAGAAAGTCATTGACAG 737
Query 537 GGCACGTGTGGAAGAAGATAAACGGAAGGAGTCAATTGTGGCTTACCTCTTGCATCTCAT 596
|||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||
Sbjct 738 GGCACGTGTGGAAGAAGACAAGCGGAAGGAGTCAATTGTGGCTTATCTGTTGCATCTCAT 797
Query 597 GAGAAAATACTCCAAGCTATTCAGAAGTGAGATGTTGGATGAGAATGATTCTCCGTGTTC 656
||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| |||||
Sbjct 798 GAGAAAATACTCCAAGCTATTTAGAAGTGAGATGATGGATGAGAATGACTCTCCTTGTTC 857
Query 657 AACACCATGTTCCCCCACTGGTCAAGGTTCTAATGAAGATCGTGTTAATGCGTTTGGGCG 716
|||||| |||||||| |||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 858 AACACCGTGTTCCCCTACTGGTCAAGGTCCTAACGAAGATCGTGTTAATGCGTTTGGGCG 917
Query 717 TCAACTATCCAAGTTTGGTTCTATTAACTATAAGCCTATGAACAGTAGGAAACCAGGACA 776
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 918 ACAACTATCCAAGTTTGGTTCTATTAACTATAAGCCTATGAACAGTAGGAAATCAGGACA 977
Query 777 GATGCCCATCCCACCAGAAGAACTTAGGTGTCCCATATCTTTGCAGCTTATGTGTGATCC 836
|||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 978 GATGCCTATTCCACCAGAAGAACTTAGGTGTCCCATATCTTTGCAGCTTATGTATGATCC 1037
Query 837 TGTCATTATTGCTTCTGGACAGACTTATGAACGGGTCTGTATCGAGAAATGGTTCAGTGA 896
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1038 TGTCATCATTGCTTCTGGACAGACTTATGAACGGGTCTGTATTGAGAAATGGTTTAGTGA 1097
Query 897 TGGACATAACTCTTGCCCCAAGACTCAGCAGCAGCTCCCACATCTTTCCCTAACTCCCAA 956
||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1098 TGGACATAACTCTTGTCCCAAGACTCAGCAGCAACTCCCACATCTTTCCCTGACTCCCAA 1157
Query 957 TTACTGTGTTAAAGGTCTGATTGCGAGCTGGTGTGAGCAGAATGGAATCTCAGTCCCCAA 1016
|||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| |
Sbjct 1158 TTACTGTGTTAAAGGTTTGATTGCGAGCTGGTGTGAACAGAATGGAATCACAGTCCCTAC 1217
Query 1017 TGGACCACCAGAATCTCTTGACCTCAACTACTGGAGACTAGCCATGTCTGACTCTGAATC 1076
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1218 TGGACCACCAGAATCTCTTGACCTCAATTACTGGAGATTAGCCATGTCTGACTCTGAATC 1277
Query 1077 CCCCAATTCAAAGTCAGTTGATAGTGTAGGATCGTGCACACCGAAGGTTGTTAAAATCGT 1136
|||||||||||||||||||||||||||||||| |||||||||||||| | | | | ||||
Sbjct 1278 CCCCAATTCAAAGTCAGTTGATAGTGTAGGATTGTGCACACCGAAGGATATCAGAGTCGT 1337
Query 1137 TCCTTTGGAGGAGAGTAGTACTATTGAATCTGAACGACAACAAAAAGAAGAAAACAATGA 1196
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1338 TCCTTTGGAGGAGAGTAGTACTATTGAATCTGAACGACAACAAAAAGAAAAAAACAATG- 1396
Query 1197 TCTTGTTGTCAATGATGAGGTGGATTCTGAAATCAATGTTCTAGAGGGGTATCATGATAT 1256
| || |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1397 -C------TC-CTGATGAGGTGGATTCTGAAATCAATGTTCTAGAGGGGTATCAGGATAT 1448
Query 1257 ATTGGCAATCTTGGACAAAGAGGAGGACTTGGCTAAAAAGTGCAAAGTAGTAGAAAATGT 1316
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1449 ATTGGCAATCGTGGACAAAGAGGAGGACTTAGCTAAAAAGTGCAAAGTAGTAGAAAATGT 1508
Query 1317 CAGGCTATTGCTAAAGGATAATGAAGAGGCCAGGATCCTCATGGGAGCCAATGGGTTCGT 1376
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 CAGGATATTGCTAAAGGATAATGAAGAGGCCAGGATCCTCATGGGAGCCAATGGGTTCGT 1568
Query 1377 CGAAGCATTTTTACAGTTTCTAGAGTCAGCTGTTCATGAAAACAATGCAGCCGCACAGGA 1436
||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1569 GGAAGCGTTTTTGCAGTTTCTAGAATCAGCTGTTCATGATAACAATGCAGCCGCACAGGA 1628
Query 1437 AACCGGAGCTATGGCTCTATTTAACTTAGCAGTGAACAATAACAGGAACAAAGGGTTGAT 1496
||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct 1629 AACCGGAGCTATGGCTCTATTTAACTTAGCAGTCAACAATAACAGGAACAAAGAGCTGAT 1688
Query 1497 GCTGACTTCAGGGGTCATCCCACTGCTGGAGAAAATGATTTCTTGTTCCCAATCCCAAGG 1556
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1689 GCTGACTTCAGGGGTCATCCCACTGCTAGAGAAAATGATTTCTTGTTCCCAATCCCAAGG 1748
Query 1557 GCCAGCAACTGCATTATATCTAAACCTCTCATGCCTCGAGGAAGCCAAGCCTGTGATTGG 1616
|||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||||||
Sbjct 1749 GCCAGCAACTGCGTTATATCTAAACCTCTCTTGCCTCGAGAAAGCCAAGCCCGTGATTGG 1808
Query 1617 CTCAAGCCAAGCAGTTCCCGTTTTCGTGAATCTTCTTCTTCAGGAAACCG-AAACCCAAT 1675
|||||| ||||||||| || ||||||||||||||||||||||||| | || |||||||||
Sbjct 1809 CTCAAGTCAAGCAGTTTCCTTTTTCGTGAATCTTCTTCTTCAGGATA-CGAAAACCCAAT 1867
Query 1676 GCAAGCTGGACGCCCTTCACGCCCTCCACGCCCTCTACAACCTCTCCACCTACTCTCCAA 1735
||||||||||||||| | | |||||||||||||||||||||||||||||||| |
Sbjct 1868 GCAAGCTGGACGCCC-T-------T-CACGCCCTCTACAACCTCTCCACCTACTCTCCCA 1918
Query 1736 ATATTCCCACTCTTCTTTCATCAAATATTATCAAAAGCCTCCAAGTGCTTGCATCAACAG 1795
||||||||||||| ||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 1919 ATATTCCCACTCTCCTTTCATCAAACATAATCAAAAGCCTCCAAGTCCTTGCATCAACAG 1978
Query 1796 GTAACCACTTGTGGATAGAGAAGTCATTAGCCGTTTTACTAAACCTAGCCTCTAGCCGGG 1855
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1979 GTAACCACTTGTGGATAGAGAAGTCATTAGCCGTATTACTAAATCTAGCCTCTAGCCGGG 2038
Query 1856 AAGGGAAAGAAGAGATGATATCAACACAAGGCATGATCAGTACTCTTGCAACGGTGCTAG 1915
|||| ||||||||||||||| |||||||||| ||||||||||| |||||||||||| |||
Sbjct 2039 AAGGAAAAGAAGAGATGATAACAACACAAGGAATGATCAGTACACTTGCAACGGTGTTAG 2098
Query 1916 ACACCGGTGACACGGTCGAACAAGAGCAAGCAGTTTCTTGCCTTGTGATCCTATGTACGG 1975
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2099 ACACCGGTGACACAGTCGAACAAGAGCAAGCAGTTTCTTGCCTAGTGATCCTATGTACGG 2158
Query 1976 GAAGTGAGTTGTGTATCCAGATGGTGCTACAAGAAGGAGTGATTCCATCTCTGGTTTCGA 2035
|||| |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2159 GAAGCGAGTCGTGTATCCAGATGGTGCTACAAGAAGGAGTGATTCCGTCTCTGGTGTCGA 2218
Query 2036 TCTCAGTGAACGGAAGTCCCCGAGGAAGAGACAAGTCTCAGAAGCTTCTGATGCTGTTCA 2095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 TCTCAGTGAACGGAAGTCCCCGAGGAAGAGACAAGTCTCAGAAGCTTCTGATGCTGTTCA 2278
Query 2096 GGGAACAAAGGCAAAGAGATCAGCCATCACCAAAGAGAGATGAAGCTCCCAGGAAAACCG 2155
||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 2279 GGGAACAAAGGCATAGAGATCAGCCATCACCAAACAAAGAAGAAGCTCCCAGGAAAACCG 2338
Query 2156 TATCGGCACCAATGGCTATACCTGCGCCAGTTTTAGCTCCAGATTCAGAAGTAAAACCTT 2215
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 2339 TATCGGCACCAATGGCTATACCTGCGCCAGTTTCAGCTCCAGAGTCAGAAGTAAAACCTT 2398
Query 2216 TGACTAAATCAATCTCCAGAAGGAAGACAATGACAAAACCATTCAGTTTCCTCTGGAAGA 2275
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 2399 TGACTAAATCAATCTCCAGAAGAAAGACAATGACAAGACCATTCAGTTTCCTCTGGAAGA 2458
Query 2276 AAAGCTACTCGATCCACCATT 2296
||||| |||||||||| ||||
Sbjct 2459 AAAGCCACTCGATCCATCATT 2479
Score = 405 bits (219), Expect = 1e-111
Identities = 231/237 (97%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 1 ATGGATGTAAGCGAGCTCGAGGAGAATTTGTTCGCTGCTAGCGATGCCAAGTTACATAGA 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 166 ATGGATGTTAGCGAGCTCGAGGAGAATTTGTTCGCTGCTAGCGATGCCAAGTTACATGGA 225
Query 61 GATATGTGCAAGGAACTATCTGCAGTTTATTGCAAGGTATTGTCCATCTTCCCGTCGTTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 226 GATATGTGCAAGGAACTATCTGCAGTTTATTGCAAGGTATTGTCCATCTTCCCTTCGTTG 285
Query 121 GAAGAAGCAAGACCTCGGAGTAAATCAGGGATTCAAGCCTTGTGTTCGTTACATATTGCA 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 286 GAAGAAGCAAGACCTCGGAGTAAATCAGGGATTCAAACCTTGTGTTCGTTACATATTGCA 345
Query 181 CTTGAAAAGGCTAAGAACATTCTTCAACACTGTTCTGAGTGTAGCAAACTTTATTTG 237
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 CTTGAGAAGGCAAAGAACATTCTTCAACACTGTTCTGAGTGTAGCAAACTTTATTTG 402
> AT1G67530.1 | Symbols: | ARM repeat superfamily protein | chr1:25307658-25311308
FORWARD LENGTH=2755
Length=2755
Score = 1469 bits (795), Expect = 0.0
Identities = 1573/1940 (81%), Gaps = 88/1940 (5%)
Strand=Plus/Plus
Query 237 GAAAGC-AAAATCTGCACTTATCAATAGTCTTAGACGCGTGGAGGACATTGTTCCTAGCT 295
|||||| ||||| ||| || || || |||||| ||| || || ||||||||||||||||
Sbjct 452 GAAAGCAAAAAT-TGCTCTCATTGATGGTCTTAAACGTGTAGAAGACATTGTTCCTAGCT 510
Query 296 CAATTGGGTCTCAGATTTTGGACATTGTTGGTGAACTAGAGCACACCAAGTTCTTACTTG 355
|||||||||| ||||||||||| |||||||||||||||||| |||||| |||| | ||||
Sbjct 511 CAATTGGGTCACAGATTTTGGAAATTGTTGGTGAACTAGAGAACACCAGGTTCATGCTTG 570
Query 356 ATCTATCAGAGAAGGAAGTTGGTGAT-AGGATAATTGCACT-ATTGCAACAAGGGAAGAA 413
||| ||| ||||||||||| |||||| | ||| |||||| | || ||||||||||||||
Sbjct 571 ATCCATCGGAGAAGGAAGTCGGTGATCA-GATTATTGCATTGCTT-CAACAAGGGAAGAA 628
Query 414 ATTTGACAACGGCAATGACAGCACCGAACTTGAAATTTTTCACCAG-GCAGCTACTAGAT 472
|||||||||| | ||||||| |||||| ||||||||||| |||| | || |||||||||
Sbjct 629 ATTTGACAACTGTAATGACAACACCGAGCTTGAAATTTTCCACC-GTGCTGCTACTAGAC 687
Query 473 TAAGTATAACTTCTTCTAGA-TCAGCTCTGGCGGAGCGGCGTGCTTTAAAGAAACTCATT 531
||||||| |||||||||||| | |||||||| || || | ||||||||||||||||||
Sbjct 688 TAAGTATCACTTCTTCTAGAGT-GGCTCTGGCAGAACGAAGGGCTTTAAAGAAACTCATT 746
Query 532 GACAGGGCACGTGTGGAAGAAGATAAACGGAAGGAGTCAATTGTGGCTTACCT-CTTGCA 590
||||||||||| | |||||||| || || ||||| |||||||||||||| || || |||
Sbjct 747 GACAGGGCACGCGCCGAAGAAGACAAGCGTAAGGAATCAATTGTGGCTTATCTTCT-GCA 805
Query 591 TCTCATGAGAAAATACTCCAAGCTATTCAGAAGTGAGATGTTGGATGAGAATGATTCTCC 650
||| |||||||||| |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 806 TCTTATGAGAAAATGCTCCAAGCTATTCAGAAGTGAGATCTTGGATGAGAATGACTCTCC 865
Query 651 GTGTTCA-ACACCATGTTCCCCCACTGGTCAAGGTTCTAATGAAGATCGTGTTAATGCGT 709
| |||| | |||||||| || | || ||| | | | || || ||||| ||| ||
Sbjct 866 GGGTTCCTAT-CCATGTTCTCCTAATG---AAGAT-C-A-TGG-GA--GTGTTCATGGGT 915
Query 710 TTGGGCGTCAACTATCCAAG-TTTGGTTCTATTAA-CTATAAGCCTATGAACAGTAGGAA 767
|||| ||||| ||||| ||| ||||||||| |||| | | ||||| |||||||| | ||
Sbjct 916 TTGGTCGTCAGCTATC-AAGGTTTGGTTCT-TTAAACGACAAGCCCATGAACAGCAT-AA 972
Query 768 AC-CAGGACAGATGCCCATCCCACCAGAAGAACTTAGGTGTCCCATATCTTTGCAGCTTA 826
| ||||||||||||| | ||||| |||||||| || ||||||||||||||||| ||||
Sbjct 973 ATTCAGGACAGATGCCTGTTCCACCCGAAGAACTGAGATGTCCCATATCTTTGCAACTTA 1032
Query 827 TGTGTGATCCTGTCATTATTGCTTCTGGACAGACTTATGAACGGGTCTGTATCGAGAAAT 886
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 1033 TGTGTGATCCTGTCATTATTGCTTCAGGGCAGACTTATGAACGGGTCTGTATTGAGAAAT 1092
Query 887 GGTTCAGTGATGGACATAACT-CTTGCCCCAAGACTCAGCAGCAGCTCCCACATCTTTCC 945
||||||||||||| ||||| | ||||||| |||||||| || |||||||||||| | ||
Sbjct 1093 GGTTCAGTGATGGGCATAA-TACTTGCCCAAAGACTCAACAACAGCTCCCACATATCTCT 1151
Query 946 CTAACTCCCAATTACTGTGTTAAAGGTCTGATTGCGAGCTGGTGTGAGCAGAATGGAATC 1005
| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 1152 TTGACTCCCAATAACTGTGTTAAAGGTCTTATTGCGAGCTGGTGTGAACAGAATGGAA-C 1210
Query 1006 TCAG-TCCCCAATGGACCACCAGAATCTCTTGACCTCAACTACTGGAGACTAGC-CATGT 1063
||| | || | ||| || || ||||||| |||||| |||||||||||||||| | | |
Sbjct 1211 TCAAATTCCTAGTGGGCCGCCGGAATCTCAAGACCTCGACTACTGGAGACTAGCTC-TCT 1269
Query 1064 CTGACTCTGAATCCCCCAATTCAAAGTCAGTTGATAGTGTAGGATCGTGCACACCGAAGG 1123
||||||| || ||| |||| ||| ||||||| | ||| |||| |||| | | |||||
Sbjct 1270 CTGACTCCGAGTCCACCAAATCACAGTCAGTCAACAGTATAGGGTCGTATAAATTGAAGG 1329
Query 1124 TTGTTAAAATCGTTCCTTTGGAGGAGAGTAGTACTATTGAATCT-GAACGACAACAAAA- 1181
|| ||||| ||||| |||||||||| | |||||| || | | ||||||||| || |
Sbjct 1330 GCGTAAAAATTGTTCCGTTGGAGGAGAATGGTACTACTGT-TGTTGAACGACAA-AACAC 1387
Query 1182 AGAAGAAAACAATGA-TCTTGTTG-TCAATGATGAGGTGGATTCTGAAATCAATGTTCTA 1239
|||||||| || ||| | || | | |||||||| ||||||||| || ||||| ||
Sbjct 1388 AGAAGAAAGTTTTGTGTCT-GATGATGA-TGATGAGGAGGATTCTGATATAAATGTACTT 1445
Query 1240 GAGGGGTATCATGATATATTGGCAATCTTGGACAAAGAGGAGGACTTGGCTAAAAAGTGC 1299
||| ||||||| ||| ||||||| |||| || ||||||||| |||| ||||| |||
Sbjct 1446 GAGAGGTATCAAGATTTATTGGCTGTCTTAAACGAAGAGGAGGGTTTGGAGAAAAAATGC 1505
Query 1300 AAAGTAGTAGAAAATGTCAGGCTATTGCTAAAGGATAATGAAGAGGCCAGGATCCTCATG 1359
|| || |||||||| ||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 1506 AAGGTTGTAGAAAAAATCAGGCTATTGCTGAAGGATGATGAAGAGGCCAGGATCTTCATG 1565
Query 1360 GGAGCCAATGGGTTCGTCGAAGCATTTTTACAGTTTCT-AG-AGTCAGCTGTTCATGAAA 1417
|||||||| ||||| || ||||| || || | | |||| || | |||||||| |||| |
Sbjct 1566 GGAGCCAACGGGTTTGTTGAAGCCTTGTTGC-GATTCTTAGGA-TCAGCTGTAGATGATA 1623
Query 1418 ACAATGCAGCCGCACAGGAAACCGGAGCTATGGCTCTATTTAACTTAGCAGTGAACAATA 1477
||||||| || || ||||| | |||||||||||||| || || ||||| || ||||| |
Sbjct 1624 ACAATGCTGCAGCTCAGGATAGTGGAGCTATGGCTCTGTTCAATTTAGCCGTCAACAACA 1683
Query 1478 ACAGGAACAAAGGGTTGATGCTGACTTCAGGGGTCATCCCACTGCTGGAGAAAATGATTT 1537
|||||||||||| ||||||| | ||||| ||||| || | |||||||||||||||||||
Sbjct 1684 ACAGGAACAAAGAGTTGATGTTAACTTCTGGGGTGATTCGGCTGCTGGAGAAAATGATTT 1743
Query 1538 CTTGTTCCCAATCCCAAGGGCCAGCAACTGCA-TTATATCTAAACCTCTCATGCCTCGAG 1596
||| | | | ||||| || ||||||| || || ||||| ||||| || || |||||
Sbjct 1744 CTTCTGCTGAGTCCCATGGTTCAGCAACCGCGCTT-TATCTGAACCTTTCCTGTCTCGAT 1802
Query 1597 GAAGCCAAG-CCTGTGATTGGCTCAAGCCAAGCAGTTCCCGTTTTCGTG---AATCTTCT 1652
||||| ||| || ||||| || |||||||||||||| || ||| | || || |||||
Sbjct 1803 GAAGCAAAGTCC-GTGATAGGTTCAAGCCAAGCAGTACC--TTTCCTTGTCCAA-CTTCT 1858
Query 1653 TCTTCAGGAAACCGAAACCCAATGCAAGCTGGACGCCCTTCACGCCCTCCACGCCCTCTA 1712
|| |||||| |||||||||||||||||| || || |||||||||||| | |
Sbjct 1859 TCAGAAGGAAATCGAAACCCAATGCAAGCTCGATGCTCTTCACGCCCTC-------T--A 1909
Query 1713 CAACCTCTCCACCTACTCTCCAAATATTCCCA-CTCTTCTTTCATCAAATATTATCAAAA 1771
|||||| ||||| || || || ||||| ||| |||| |||||||| || || ||||| |
Sbjct 1910 CAACCTTTCCACATATTCCCCCAATAT-CCCTGCTCTCCTTTCATCTAACATCATCAAGA 1968
Query 1772 GCCTCCAAGTGC-TT---GCATCAACAGGT-AACCACTTGTGGATAGAGAAGTCATTAGC 1826
||||||||| || || |||||||||||| || | |||||||||||||||||| ||||
Sbjct 1969 GCCTCCAAG-GCCTTCTCGCATCAACAGGTGAAA-ATTTGTGGATAGAGAAGTCACTAGC 2026
Query 1827 CGTTTTACTAAACCTAGCCTCTAGCCGGGAAGGG-AAAGAAGA-GATGATATCAACACAA 1884
||| || ||||| ||||| || |||| ||| ||| ||||| || | | ||||| ||||
Sbjct 2027 CGTATTGCTAAATCTAGCTTCAAGCCAGGA-GGGCAAAGATGAAGCGG-TATCATCACAG 2084
Query 1885 GGCATGATCAGTACTCTTGCAACGGTGCTAGACACCGGTGACACGGTC-GAACAAGAGCA 1943
||||||||||| | ||| ||||| |||||||||| |||||||| | || || |||||
Sbjct 2085 GGCATGATCAGCAGTCTAGCAACAGTGCTAGACATGGGTGACACAA-CAGAGCAGGAGCA 2143
Query 1944 AGCAGTTTCTTGCCTTGTGATCCTATGTACGGGAAGTGAGT-TGTGTATCCAGATGGTGC 2002
||| ||||| |||||| |||| ||||| | ||||| |||| | |||||||| |||||||
Sbjct 2144 AGCTGTTTCATGCCTTTTGATTCTATGCAATGGAAGAGAGTCT-TGTATCCAAATGGTGC 2202
Query 2003 TACAAGAAGGAGTGATTCCATC-TCTGGTTTCGATCTCAGTGAACGGAAGTCCCCGAGGA 2061
|||||||||| ||||| ||||| | | || || ||||| || ||||||| || |||||
Sbjct 2203 TACAAGAAGGTGTGATACCATCAT-TAGTGTCAATCTCTGTAAACGGAACACCTCGAGGC 2261
Query 2062 AGAGACAAGTCTCAGAAGCTTCTGATGCTGTTCAGGGAACAAAGGCA--AA-GAGATCAG 2118
||||| ||||||||||||||||| |||||||| |||||| |||| || || | || |||
Sbjct 2262 AGAGAGAAGTCTCAGAAGCTTCTAATGCTGTTTAGGGAAGAAAGACAGCAACGGGACCAG 2321
Query 2119 CCATCACCAAAGAGAGATGA 2138
||||| |||| ||||||||
Sbjct 2322 CCATCTTCAAACAGAGATGA 2341
> AT1G15165.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily
protein | chr1:5217719-5220113 REVERSE LENGTH=1036
Length=1036
Score = 265 bits (143), Expect = 2e-69
Identities = 179/196 (91%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 811 ATATCTTTGCAGCTTATGTGTGATCCTGTCATTATTGCTTCTGGACAGACTTATGAACGG 870
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 812 ATATCTTTGCAGCTTATGCGTGATCCTGTCATTGTTGCTTCTGGACAGACTTATGAACGG 871
Query 871 GTCTGTATCGAGAAATGGTTCAGTGATGGACATAACTCTTGCCCCAAGACTCAGCAGCAG 930
|||||| |||||||||||||| |||||||| | |||||||||||||| |||||| |||||
Sbjct 872 GTCTGTGTCGAGAAATGGTTCTGTGATGGA-A-AACTCTTGCCCCAATACTCAGAAGCAG 929
Query 931 CTCCCACATCTTTCCCTAACTCCCAATTACTGTGTTA-AAGGTCTGATTGCGAGCTGGTG 989
||||||||||||||||| |||| ||| |||||||||| ||| |||||||||||| ||||
Sbjct 930 CTCCCACATCTTTCCCTGACTCGCAACTACTGTGTTACAAG-TCTGATTGCGAGTTGGTA 988
Query 990 TGAGCAGAATGGAATC 1005
| |||||||||| |||
Sbjct 989 TCAGCAGAATGGGATC 1004
Score = 243 bits (131), Expect = 8e-63
Identities = 257/313 (82%), Gaps = 27/313 (9%)
Strand=Plus/Plus
Query 20 AGGAGAATTTGTTCGCTGCTAGCGATG-CCAAGTTACATAGAGA--TATGTGCAAGGAAC 76
|||||||||||| |||||||||||||| |||||||||||||||| | |||||||| ||
Sbjct 323 AGGAGAATTTGTCCGCTGCTAGCGATGCCCAAGTTACATAGAGATGTGTGTGCAAGAAAT 382
Query 77 TATCTGCAGTTTATTGCAAGGTATTGTCCATCTTCCCGTCGTTGGAAGA-AGCAAGACCT 135
|||||||| |||||| |||||| | ||| ||||||| |||||||||| | |||||||||
Sbjct 383 TATCTGCACTTTATTACAAGGTGTGGTCGATCTTCCTGTCGTTGGAA-ATTGCAAGACCT 441
Query 136 CGGAGTAAATCAGGGATTCAAGCCTTGTGTTCGTTACATA-TTGCACTTGAA-AAGGCTA 193
||||||||| | |||||||||||||||||||||||||||| || ||||||| ||| | |
Sbjct 442 CGGAGTAAACCCGGGATTCAAGCCTTGTGTTCGTTACATAATT-CACTTGAGGAAG-CAA 499
Query 194 AGAACATTCTTCAACACTGTTCTGAG---TG--T----A-GCAA-ACTTTAT---TTGA- 238
||||||||||||||||||||| |||| | | | || | || || ||||
Sbjct 500 AGAACATTCTTCAACACTGTTTTGAGCCATCACTGGGGATGCTATACCGTAGAAATTGAG 559
Query 239 AAGC-AAAATCTGCACT-TATCAATAGTCTTAGACGCGTGGAGGACATTGTTCCTAGCTC 296
|| | ||||| |||| | ||| || |||||||||||| ||||||||||||||||||| ||
Sbjct 560 AAACCAAAATATGCA-TGTATGAAAAGTCTTAGACGCATGGAGGACATTGTTCCTAGATC 618
Query 297 AATTGGGTCTCAG 309
|| ||||| ||||
Sbjct 619 AAGTGGGTTTCAG 631
> AT1G15175.1 | Symbols: | other RNA | chr1:5222913-5224121 REVERSE
LENGTH=829
Length=829
Score = 233 bits (126), Expect = 5e-60
Identities = 217/259 (84%), Gaps = 14/259 (5%)
Strand=Plus/Plus
Query 511 CGTGCTTTAAAGAAACTCATTGACAGGGCACGTGTGGAAGAAGATAAACGGAAGGAGTCA 570
|||||||||||| |||||||| ||| ||||||||||| |||||| || |||||||| |||
Sbjct 194 CGTGCTTTAAAG-AACTCATTCACAAGGCACGTGTGGGAGAAGACAACCGGAAGGAATCA 252
Query 571 ATTGTGGCTTACCTCTTGCATCTCATGAGAAAATACTCCAAGCTATTCAGAAGT-GAGAT 629
||| | || || | | ||||||||||||||||||| |||||| ||||| || ||
Sbjct 253 ATTAT---TT--GTCAT--ACCTCATGAGAAAATACTCCATTCTATTCTGAAGTGGA-AT 304
Query 630 GTTGGATGAGA-ATGATTCTCCGTGTTCAACACCATGTTCCCCCACTGGTCAAGGTTCTA 688
|||||||| | |||| ||| |||| ||||||||||||||| |||||||||||||||||
Sbjct 305 TTTGGATGATATATGACTCTTAGTGTCCAACACCATGTTCCCTCACTGGTCAAGGTTCTA 364
Query 689 ATGAAGATCGTGTTAATGCGTTTGGGCGTCAACTATCCAAGTTTGGTTCTATTAACTATA 748
|||||||||||||| |||| ||||| |||||||||| |||||| |||||||||||||||
Sbjct 365 ATGAAGATCGTGTTCATGCATTTGGT-GTCAACTATCAAAGTTTAGTTCTATTAACTATA 423
Query 749 -A-GCCTATGAACAGTAGG 765
| ||| ||| | ||||||
Sbjct 424 TAAGCCCATGGAGAGTAGG 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114055638240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5