BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472914
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2294 0.0
> AT1G24310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 13 growth stages; Has 2922 Blast hits to
2454 proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa
- 1043; Fungi - 654; Plants - 388; Viruses - 11; Other
Eukaryotes - 769 (source: NCBI BLink). | chr1:8624061-8626405
FORWARD LENGTH=1491
Length=1491
Score = 2294 bits (1242), Expect = 0.0
Identities = 1396/1469 (95%), Gaps = 15/1469 (1%)
Strand=Plus/Plus
Query 1 CCGAGAATTCCGTCGAACGCTTGAGCTGCGTTTTAAAGTTCTCCGAATGGCGCCTTTTGC 60
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 20 CCGAGAATTCCGTCGAACACTTGAGCTGCGTTTTAAAGTTCTCCAAATGGCGCCTTTTGC 79
Query 61 CTAAC-AAAAAACCTTTACCTTCTTCACAGAGATCTAACCTCTCCTTTTCCCAATGTTCG 119
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 CT-ACTAAAAAACCTTTACCTTCTTCACAGAGATCTAACCTCTCCTTTTCCCAATGTTCG 138
Query 120 GCACTCCGTCATCCTCGCCGTCCTTCGGCACTCCGTCGTCCACACCCGCCTTTGGTACGT 179
|||||||||| || |||||||| |||||||||||||| ||||||||||||||||| || |
Sbjct 139 GCACTCCGTCTTCATCGCCGTCATTCGGCACTCCGTCATCCACACCCGCCTTTGGCACAT 198
Query 180 CTTCACCGGCGTTCGGTACACCATCAGCCACGCCTGCGTTCGGAACGCCGTCGGTTCCTT 239
|||| ||||||||||||||||| ||||| |||||||||||||| ||||| ||| |||||
Sbjct 199 CTTCTCCGGCGTTCGGTACACCGTCAGCTACGCCTGCGTTCGGTACGCCATCGAATCCTT 258
Query 240 CCTTCTCCTCCGGCGGATTTGGCTCCTCACTCTTCTC-TACTCCCTTCTCATCTcaacag 298
||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 259 CCTTCTCCTCCGGCGGATTTGGCTCTTCACTCTTCTCGT-CTCCCTTCTCATCTCAACAG 317
Query 299 ccacagcaacaacagcaacagcagcaacaacagcagcagcCGAGTTCACTGTTTCAGCAA 358
|||||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 318 CCACAGCAACAACAACAACA--A-CAACAGCAGCAGCAGCCGAGTTCACTGTTTCAGCAA 374
Query 359 CAGCCATCTTCTAGTTTTGGTTTTCAGTCACCATTCAACAACACCGCT------CAGCAG 412
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 375 CAGCCATCTTCTAATTTTGGTTTTCAGTCACCATTCAACAACACCGCTCAGCAGCAGCAG 434
Query 413 CAAACGCCGTTT-CCAAATGCTCAATTGACTACTCAGATGGCTCCCGTTGCTCCAATTCC 471
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 CAAACGCC-TTTCCCAAATGCTCAATTGACTACTCAGATGGCTCCCGTTGCTCCAATTCC 493
Query 472 TTACTCTCTCGCCGATCGTGACGTCCAGGTTATCATTGAAGCGTATAAGGAAGGTCCGAC 531
||||||||||||||||||||| ||||||| |||||||||||| |||||||||| ||| ||
Sbjct 494 TTACTCTCTCGCCGATCGTGATGTCCAGGCTATCATTGAAGCTTATAAGGAAGATCCAAC 553
Query 532 GAATCCCAAGTATGCTTTTCAGCATCTTTTGTTTAGCGTGACTGAACCACAGTACCGGGT 591
|||||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 554 GAATCCCAAGTATGCTTTTCAGCATCTTTTATTCAGTGTGACTGAACCACAGTACCGGGT 613
Query 592 GAAGCCTGCAGCTGTTTCAGATATAATGTGGGCAGAGGCTATGAGCAAACTTGAAGGCAT 651
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 614 GAAGCCTGCAGCTGTATCAGATATAATGTGGGCAGAGGCCATGAGCAAACTTGAAGGTAT 673
Query 652 GGATTCAACAGAAAGAGAGCGCCTGTGGCCTCAGCTTGTGCAAGGTTTCAAAGATCTTTC 711
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 674 GGATTCAACAGAAAGAGAGCGCCTTTGGCCTCAGCTTGTGCAAGGTTTCAAAGATCTCTC 733
Query 712 TCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGCCTCAGATAGGGATAGAATAAAAACGAC 771
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 734 TCAGCGCCTTAAGCTTCAAGATGAAGTTCTCGTCTCAGATAGGGATAGAATAAAAACGAC 793
Query 772 TCAGAGCAATGTTAAAATGCTCCAGAGACATTTGCAAGCATCAACCTTTCCATCTATTGA 831
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 794 TCAGAGCAATGTTAAAATGCTTCAGAGACATTTGCAAGCATCAACCTTCCCATCTATTGA 853
Query 832 AAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCATGTTGAGGGTGATGAGGATAAT 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 854 AAGGTTGAGACAGAAGGAGCAGAGTCTTCAAAGACGCATGTTGAGGGTGATGAGGATTAT 913
Query 892 AGAGGGCTTAGAAGGGAAGGGTTTCCGGTTACCCTTGACAAAAGGAGAGGCCGAACTGTC 951
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 914 AGAAGGCTTAGAAGGGAAGGGTTTCCGGTTACCCTTGACGAAAGGAGAGGCCGAACTGTC 973
Query 952 TGAGAAGTTAACTGCAATAACAAGACAGGTGAAAGGTCCTGGAGCAGAGCTTTCTAGGAG 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 TGAGAAGTTAACTGCAATAACAAGACAGGTGAAAGGTCCTGGAGCAGAGCTTTCTAGGAG 1033
Query 1012 GGTGCAAAGTCTGCAGACAATATCTCGTGCTCAAGCAAATTCAATTGCTGCTGGTAGTTC 1071
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 GGTGCAAAGTCTGCAGACGATATCTCGTGCTCAAGCAAATTCAATTGCTGCTGGTAGTTC 1093
Query 1072 CCTTTATCTCCCTGGGTCAACTAAAATAGATGAGCAGAGCTTGATAGATATGCAGGAGGT 1131
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1094 CCTTTATCTCCCTGGGTCAACTAAAATAGACGAGCAGAGCTTGATAGATATGCAGGAGGT 1153
Query 1132 ATTGCAACAGGAGACAGAAGCCATAGGAAGGCTTGGGAACGTATTGAAGCGAGACATGAG 1191
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1154 ATTGCAACAAGAGACAGAAGCCATAGGAAGACTTGGGAACGTATTGAAGCGAGACATGAG 1213
Query 1192 AGATATGGAAATCATGGTGGCTGAAGATACAGAAATGGCTCAAGATTCATAGAAGTGGAT 1251
|||||||||||||||||||||||||||||||||||||| | ||| ||||||||| | ||
Sbjct 1214 GGATATGGAAATCATGGTGGCTGAAGATACAGAAATGGCACTAGACTCATAGAAGCGAAT 1273
Query 1252 CTGCAATTACTCTAGTTTCGAAGTTCTCCTATCCTTTACTATCTCCTGGATGCGCACGTT 1311
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||
Sbjct 1274 CTGCAATTACTCTAGTTTCGAAGTTCTCTTATCCTTTACCATCTCCTGGATGCGCACATT 1333
Query 1312 GTTATGCTCAGAAACGACAAGGCTAGCTTTGGACTTTAACGTGTACGTAGTAGCTGAGCT 1371
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1334 GTTATGCTCAGAAACGACAAGGCTAGCTTTGGACTTTAACATGTACGTAGTAGCTGAGCT 1393
Query 1372 ATAAATCTTGATGTATTGTGATATAATTTTCATTAAAGCCTTTGGAAGAGACTGCCTTAT 1431
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1394 ATAAATCTTGATGTATTGTGATATAGTTTTCATTAAAGCCTTTGAAAGAGACTGCCTTAT 1453
Query 1432 TTTGTTCTCAAACACGGGCAGATAGGTTT 1460
||||||| |||||||| || ||||| |||
Sbjct 1454 TTTGTTCACAAACACGAGCGGATAGTTTT 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72037782075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5