BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472917
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24290.1 | Symbols: | AAA-type ATPase family protein | chr1... 2525 0.0
> AT1G24290.1 | Symbols: | AAA-type ATPase family protein | chr1:8612505-8614277
REVERSE LENGTH=1773
Length=1773
Score = 2525 bits (1367), Expect = 0.0
Identities = 1587/1691 (94%), Gaps = 23/1691 (1%)
Strand=Plus/Plus
Query 1 TTTTCCACAGTAGAAGTAGAAGATGGAGCAGCTAGTGAGCATGGGTTTCTCCAGCGATTT 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 29 TTTTTCACAGTAGAAGTAGAAGATGGAGCAGCTAGTGAGCATGGGTTTCTCCAGCGATTT 88
Query 61 GGCCGCCGAGGCTTTAACGGCCACCGGCGGAGATTCCATTCAGAAAGCCACCGACTGGAT 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 89 GGCCGCCGAGGCTTTAACGGCCACCGGCGGAGATTCCATCCAGAAAGCCACCGACTGGAT 148
Query 121 TCTCTCCCACCGCTCTTCCCCCCAATCCACCGCCACGTTACAGCCCAAACTCGACCGCTT 180
|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 149 TCTCTCCCACCGTTCTTCCCCTCAATCCACGGCCACGTTACAGCCCAAACTCGACCGCTT 208
Query 181 CCTCCGCCTCAATCCCAAAACCCTAAGCCCC-GTCGTGGGTGACGATTCCAGCAAGCGCC 239
|||||| ||| |||||||| ||||| ||||| | | ||||||||||||||||||||||||
Sbjct 209 CCTCCGTCTCCATCCCAAAGCCCTA-GCCCCCGCCATGGGTGACGATTCCAGCAAGCGCC 267
Query 240 CTAATCCGGAAACCCAAATCCCCGGCGCGGCTGATGATTCCAACAAGCGCCCCAAGCTCT 299
| ||||| |||||||||||| || |||||||||||||||||||||||| | ||||||||
Sbjct 268 CCAATCCCAAAACCCAAATCCACGTCGCGGCTGATGATTCCAACAAGCGTCACAAGCTCT 327
Query 300 CATCATCCCGCCACCGCCAACACCAGCCATTGTCGGAGCGTATGCGTCCTCGCACACTCG 359
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 328 CATCATCCAGCCACCGCCAACACCAGCCATTGTCGGAGCGTATGCGTCCTCGCACTCTAG 387
Query 360 ACGATGTTGTAGGTCAAGACCATCTCCTCTCACCC-GCTTCTCTCCTCCGTTCCGCCATC 418
| || |||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||
Sbjct 388 ATGACGTTGTAGGTCAAGACCATCTCCTCTCTCCCAGCT-CTCTCCTCCGTTCCGCCGTC 446
Query 419 AAATCCAATCGCCTCCCTTCTATTGTCTTCTGGGGTCCTCCTGGCACCGGAAAGACCTCA 478
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 447 GAATCCAATCGCCTCCCTTCCATTGTCTTCTGGGGTCCTCCTGGCACTGGAAAGACCTCA 506
Query 479 ATCGCCAAGTCTCTCATCAATTCATCTAAGGACCCGTCTCTGTATCGCTTCGTCTCCTTG 538
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 507 ATCGCAAAGTCTCTCATCAATTCCTCTAAGGACCCGTCTCTGTATCGCTTCGTTTCCTTG 566
Query 539 TCTGCTGTTACTAGCGGGGTTAAGGATGTTAGAGACGCCGTTGAGAGTGCCAAAAGGCTT 598
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 567 TCTGCTGTTACGAGCGGAGTTAAAGATGTTAGAGACGCCGTTGAGAGTGCCAAAAGGCTT 626
Query 599 AATCTTGAAGGTAAAAAGAGGACTGTGTTGTTTATGGATGAGGTTCATAGGTTTAACAAG 658
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 AATCTTGAAGGTAGAAAGAGGACTGTGTTGTTTATGGATGAGGTTCATAGGTTTAACAAG 686
Query 659 TCACAGCAAGACT-CATTCTTGCCTGTTATTGAAGATGGTACTATCCTCTTCATTGGAGC 717
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 687 TCACAGCAAGA-TACATTCTTGCCTGTTATTGAAGATGGTAGTATCCTCTTCATTGGAGC 745
Query 718 CACCACTGAGAACCCATCTTTCCATTTGATCACTCCTTTGCTCTCACGTTGTAGAGTTCT 777
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 CACCACTGAGAACCCTTCTTTCCATTTGATCACTCCTTTGCTCTCACGTTGTAGAGTTCT 805
Query 778 TACTCTTAATCCCTTGAAACCCAACCATGTTGAGACCCTTCTTAGACGAGCTGTAGATGA 837
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 806 AACTCTTAATCCCTTGAAACCCAATCATGTTGAGACCCTTCTTAGACGAGCTGTAGATGA 865
Query 838 TTCCGAGAGAGGACTCTCCAATAGCGTTGAGGTTGATGATTCTGTCATTGAGTTCTTGGC 897
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 866 TTCCGAGAGAGGACTCCCCAATAGCGTTGAGGTTGATGATTCTGTCATAGAGTTCTTGGC 925
Query 898 TTATAACTGCGATGGTGATGCACGCGTCGCGTTGAATGCTTTGGAAATATCAGCTACTAT 957
| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 926 TAATAACTGCGATGGTGATGCTCGCGTCGCGTTGAATGCTTTGGAAATCTCAGCTACCAT 985
Query 958 GGCTACCGCTCGAGCCGGATCTGAGGCTGTTGTGTCTATTGATGATGCAAAGGAGGCTCT 1017
||||||| ||||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct 986 GGCTACCACTCGAGCCGGAACTGATGCTGTTGTGTCTATTGATGATGCGAAGGAGGCTCT 1045
Query 1018 TCAGTGCAAACATTTGGCCTATGACAAGGCAGGGGATCAACATTACAACCTCATAAGCGC 1077
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1046 TCAGTGCAAACATTTGGCATATGACAAGGCAGGGGAACAACATTACAACCTCATAAGCGC 1105
Query 1078 ACTTCACAAGTCTATGCGAGGAGGAGATGCTAATGCTGCAATCTACTGGCTGGCTAGAAT 1137
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1106 ACTTCACAAGTCTATGCGAGGCGGAGATGCTAATGCTGCAATCTACTGGTTGGCTAGAAT 1165
Query 1138 GCTCGAGGGTGGTGAAGAGCCGCTTTACATTGCGAGGAGACTTATAAGGTTTGCAAGCGA 1197
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1166 GCTCGAGGGTGGTGAAGAGCCGCTTTACATTGCAAGGAGACTTATAAGGTTTGCAAGCGA 1225
Query 1198 GGACATTGGGCTTGCTGACCCTTCAGCTCTTACCCAGGCAGTTGCGTGCTATCAAGCTTC 1257
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1226 GGACATTGGACTTGCTGACCCTTCAGCTCTTACTCAGGCAGTTGCGTGCTATCAAGCTTC 1285
Query 1258 GCATTTCTTGGGTATGCCTGAATGCAATGTGATTCTCGCCCAATGCACCGCTTACTTGGC 1317
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1286 ACATTTCTTGGGTATGCCTGAATGCAATGTCATTCTCGCCCAATGCACTGCTTACTTGGC 1345
Query 1318 ACTGGCTCCTAAATCTGTTGCAGTTTACCGAGCAATAGGAGCTGCACAGAAGGTTGTGAA 1377
||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1346 ACTGGCTCCTAAATCCATTGCAGTTTACCGAGCAATCGGAGCTGCACAGAAGGTTGTGAA 1405
Query 1378 GGACTCGGTTGGACAGAATGAAGGAGTCCCTCTACACCTGAGGAACGCTCCAACCAAGTT 1437
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1406 AGACTCGGTTGGACAGAATGAAGGGGTGCCTCTACACCTGAGGAACGCTCCAACCAAGTT 1465
Query 1438 AATGAAGGAACTCGGCTATGGAAAAGAGTATATATATCCTCCG-GATGATCCTTCTTCTG 1496
|||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1466 AATGAAGGAACTTGGCTATGGAAAAGAGTATATATATCCTCCCAG-TGATCCTTCTTCTG 1524
Query 1497 CGGCAGCTCAGAAATATTTACCTCCGTCTCTTCTGCATTATAAGTTCCTGGAATGGCCAC 1556
| |||| ||||| |||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1525 CTGCAGGTCAGACATATCTACCTCCGTCTCTTCTGCATCATAAGTTCCTGGAATGGCCAG 1584
Query 1557 ATGGTGCTTCAGGTGATCTCCAAGATCAGGAACACAAGTTCTAACC--T-------CT-T 1606
| || |||||||| ||| |||||||||| ||||||| | ||||||| | || |
Sbjct 1585 AAGGGGCTTCAGGCGATTTCCAAGATCAAGAACACAGGCTCTAACCAGTATTTTTTCTCT 1644
Query 1607 -TTT--GGTATGTGATGTATAGAGAGAATCATGTTGTTCAAGTCTTTGAAGAGGCTACAC 1663
||| |||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 1645 CTTTTTGGTATGTGATGTATAGAG-GA-TCATGTTGTTCAAGTCTTTGCAGAGGCTACAC 1702
Query 1664 TTTAATTTGTG 1674
|| ||||||||
Sbjct 1703 TTAAATTTGTG 1713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83885110695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5