BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472923
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24260.2 | Symbols: SEP3, AGL9 | K-box region and MADS-box t... 1491 0.0
> AT1G24260.2 | Symbols: SEP3, AGL9 | K-box region and MADS-box
transcription factor family protein | chr1:8593642-8596098
REVERSE LENGTH=1140
Length=1140
Score = 1491 bits (807), Expect = 0.0
Identities = 906/949 (95%), Gaps = 26/949 (3%)
Strand=Plus/Plus
Query 1 gagagagagaaggagagatcttttgggaga-g-g--ag---aa-aaaatgggaagaggga 52
|||||||||| |||| ||||||||||||| | | || || ||||||||||||||||
Sbjct 190 GAGAGAGAGATTGAGATATCTTTTGGGAGAGGAGAAAGAAAAAGAAAATGGGAAGAGGGA 249
Query 53 gagtagaattgaagaggatagagaACAAGATCAATAGGCAAGTGACGTTTGCAAAGAGAA 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GAGTAGAATTGAAGAGGATAGAGAACAAGATCAATAGGCAAGTGACGTTTGCAAAGAGAA 309
Query 113 GGAATGGTCTTTTGAAGAAAGCATACGAGCTTTCAGTTCTATGTGATGCAGAAGTTGCTC 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 GGAATGGTCTTTTGAAGAAAGCATACGAGCTTTCAGTTCTATGTGATGCAGAAGTTGCTC 369
Query 173 TCATCATCTTCTCAAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCGAGCATGCTTC 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TCATCATCTTCTCAAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCGAGCATGCTTC 429
Query 233 GGACACTGGAGAGGTACCAAAAGTGTAACTATGGAGCACCAGAACCCAATGTGCCTTCAA 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GGACACTGGAGAGGTACCAAAAGTGTAACTATGGAGCACCAGAACCCAATGTGCCTTCAA 489
Query 293 GAGAGGCCTTAGCAGTTGAACTTAGTAGCCAGCAGGAGTATCTCAAGCTTAAGGACCGTT 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 490 GAGAGGCCTTAGCAGTTGAACTTAGTAGCCAGCAGGAGTATCTCAAGCTTAAGGAGCGTT 549
Query 353 ACGACGCCTTACAGAGAACCCAAAGGAATCTACTGGGAGAAGATCTTGGGCCTCTAAGTA 412
| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 550 ATGACGCCTTACAGAGAACCCAAAGGAATCTGTTGGGAGAAGATCTTGGACCTCTAAGTA 609
Query 413 CAAAGGAGCTTGAGTCACTTGAGAGACAGCTTGATTCTTCCTTGAAGCAGATCAGAGCTC 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 CAAAGGAGCTTGAGTCACTTGAGAGACAGCTTGATTCTTCCTTGAAGCAGATCAGAGCTC 669
Query 473 TCCGGACACAGTTTATGCTCGACCAGCTCAACGATCTTCAGAGTAAGGAACGCATGCTGA 532
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TCAGGACACAGTTTATGCTTGACCAGCTCAACGATCTTCAGAGTAAGGAACGCATGCTGA 729
Query 533 CTGAGACAAATAAAACTCTAAGACTAAGGTTAGCTGATGGGTATCAGATGCCACTCCAGC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CTGAGACAAATAAAACTCTAAGACTAAGGTTAGCTGATGGGTATCAGATGCCACTCCAGC 789
Query 593 TGAACCCTAACCAAGAAGAGGTTGATCACTACGGTCGTCATCATCA--A-CA-C------ 642
|||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 790 TGAACCCTAACCAAGAAGAGGTTGATCACTACGGTCGTCATCATCATCAACAACAACAAC 849
Query 643 --TCCCAAGCTTTCTTCCAGCCTTTGGAGTGTGAACCCATTCTTCAGATCGGGTATCAGG 700
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 850 ACTCCCAAGCTTTCTTCCAGCCTTTGGAATGTGAACCCATTCTTCAGATCGGGTATCAGG 909
Query 701 GGCAGCAAGATGGAATGGGAGCAGGACCAAGTCTGAATAATTACATGTTGGGTTGGTTAC 760
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 910 GGCAACAAGATGGAATGGGAGCAGGACCAAGTGTGAATAATTACATGTTGGGTTGGTTAC 969
Query 761 CTTATGACACCAACTCTATTTGAATCTTTCTTACTTAATTAATCTCTC-Ctttttttt-- 817
||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||||||
Sbjct 970 CTTATGACACCAACTCTATTTGAATCTTTCTCACTTAATCAATCCCTCTCTTTTTTTTTT 1029
Query 818 GACATTTTTAAGATGATGTTTCTATTTTATTACCTCTCTCATGTTTTCTGTCTTGTGTGC 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GACATTTTTAAGATGATGTTTCTATTTTATTACCTCTCTCATGTTTTCTGTCTTGTGTGC 1089
Query 878 ATGTGTGTGT--AATGTTTATGCCCTATCTATAATTCAATAATTTTTTC 924
|||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 1090 ATGTGTGTGTGTAATGTTTATGCCCT-TCTATTATTCAATAATTTTTTC 1137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5