BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472924
Length=892
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27290.1 | Symbols: | unknown protein; Has 44 Blast hits to... 907 0.0
> AT1G27290.1 | Symbols: | unknown protein; Has 44 Blast hits
to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:9481532-9482912 FORWARD
LENGTH=1021
Length=1021
Score = 907 bits (491), Expect = 0.0
Identities = 843/991 (85%), Gaps = 111/991 (11%)
Strand=Plus/Plus
Query 1 TTGCAGAAATTTCAATCG-TTTTGTTGTGTGTACAGAGAGATTATCGTGTTTTGTTGGCA 59
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 43 TTGCAGAAATTTCGATCGTTTTTGTTGTGTGTACAGAGAGATTATCGTGTTTTGTTGGCA 102
Query 60 ATCGCCATTAAACCTTCTTCTTCTTCT-ACCCAATC-AATTTGCGGCTCTTTCCTTTATC 117
|||||||||||||||||||| | ||| |||||||| |||||||||||||||| ||||||
Sbjct 103 ATCGCCATTAAACCTTCTTC--CCTCTAACCCAATCAAATTTGCGGCTCTTTCTTTTATC 160
Query 118 TTCTCTCCTCGGTTTTAGCAAACCAtttttttCCTTTCGTTATCTTCTTCCTCAAGCAAT 177
||||| |||||||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 161 TTCTCGCCTCGGTTTTAGCAAA-C--------CCTTTAGTTATCTTCTTCCTCAAGCAAT 211
Query 178 TTTCCTTTTGGATT--A----------C----AG--TG-GTGGTGATGATGAGAAGGCAA 218
||| |||||||||| | | | || |||||||||||||||||||||
Sbjct 212 TTTTCTTTTGGATTAGATTGGTGTTTTCTTTTGGTTTGTGTGGTGATGATGAGAAGGCAA 271
Query 219 CGAGATGAACAACAATCTAGGGTTTTCTACGATCTATCAGCTCTTGTTTTGAATCTTCTC 278
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 272 CGAGATGAACAACAATCTAGGGTTTTCTACGATCTATCATCTCTTGTTTTGAATCTTCTC 331
Query 279 CGTTCTCCTCCTATGCCGATTTCTTTACCTGATCATTTTCCCGATCCACCGGCTAGAATT 338
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 332 CGTTCTCCTCCTATGCCGATTTCTTTACCTGATCATTTCCCCGATCCGCCCGCTAGAATT 391
Query 339 CGTCCTCCC---TCTTCG--TC----TTCG-C--CTT---C--C-ATGGCTCATATTTCA 380
||||||||| |||||| || |||| | ||| | | |||||||||||||
Sbjct 392 CGTCCTCCCTTTTCTTCGCATCGTTTTTCGTCTTCTTCGCCTTCTTTGGCTCATATTTCT 451
Query 381 CCATCGGGGTTCGCGTCGTTGCTTCTTGGTATATCTGTGGCTCTTATGCTCTGTGGATCT 440
|| || || |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 452 CCGTCTGGATTCGCGTCGTTGCTGCTTGGTATATCTGTGGCTCTTATGCTATGTGGATCT 511
Query 441 GTGACTTTCTTCATCGGGTTTCTTC-TGATGCCTTGGGTTATTGCTCTGATTATGGTTTT 499
|||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||
Sbjct 512 GTGACTTTCTTCATCGGGTTTC-TCTTGATGCCTTGGGTTCTTGCTCTGATTTTGGTTTT 570
Query 500 CTATGTCGCTGGCATCGTTTCCGCCATTTCTATGGTTGGGAGGTCGATTCTCTGTTACGT 559
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 571 CTATGTCGCTGGCATCGTTTCTGCCATTTCTATGGTCGGGAGGTCGATTCTCTGTTACGT 630
Query 560 CTTGACGCCACCTTCTCCCTCCGGAAAAGAGATTTCTGATTGGAAGCTTCTGTGAA--G- 616
|||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| |
Sbjct 631 CTTGACGCCACCTTCTCCTTCCGGAAAGGAGATTTCTGAATGGAAGCTTCTGTGAAATGA 690
Query 617 T---------GAG---AAG---CTATACATCATCCGGAA-C-GA--AG--C-A-G-A-AC 651
| ||| ||| ||||||||||||||||| | || || | | | | |
Sbjct 691 TTAAACAACAGAGGTGAAGAATCTATACATCATCCGGAAGCAGAGCAGAGCGAAGCAGAA 750
Query 652 CAAAAAA--GA-GAAG--G-ATTGATtatataaatatatatatCCAATAGAGTTTTTCTA 705
||||||| || |||| | |||||||||||||| | |||||||| ||||||||||||||
Sbjct 751 CAAAAAAAAGAAGAAGAAGGATTGATTATATAAACACATATATCCGATAGAGTTTTTCTA 810
Query 706 TGTTCGTTATCTGTATTTTGTTGGGGGG-TTTGGGAAAATCATGTGGATATCAGGGAGTT 764
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 811 TGTTCTTTATCTGTATTTTGTTGGGGGGGTTTGGGAAAATCATGTGGATATCAGGGAGTT 870
Query 765 T-A-A-------A-A----G------GAATTTTTCTATTTTACTACTGTTAGAAATAGAG 804
| | | | | | |||||||||||||| |||||||||||||||||||
Sbjct 871 TTATATTTCTTTACATTTCGAAAAAAGAATTTTTCTATTTAACTACTGTTAGAAATAGAG 930
Query 805 AAGCCTTCATATTTGTGCTTTCATGGATGTCGTTATTATGTAACATGAT--TT-CTCAAA 861
||||||| |||||||||||||||| |||||||| |||||||||||||| || || |||
Sbjct 931 AAGCCTTGTTATTTGTGCTTTCATGTATGTCGTTTTTATGTAACATGATCATTTCTTAAA 990
Query 862 GCATACCAAAAGATTTTAGGATTTCTGTTGC 892
|||||| ||||||||||||||||||||||||
Sbjct 991 GCATACAAAAAGATTTTAGGATTTCTGTTGC 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43553005449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5