BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472942
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27385.4 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 935 0.0
> AT1G27385.4 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown
function DUF493 (InterPro:IPR007454); Has 79 Blast hits to
79 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa
- 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr1:9510475-9512820 REVERSE LENGTH=765
Length=765
Score = 935 bits (506), Expect = 0.0
Identities = 575/608 (95%), Gaps = 5/608 (1%)
Strand=Plus/Plus
Query 17 ATGGCTTGCAAAACGATTTTGCGTTCCGTTTTCGTATCGGAATCACGTCGAACTTCCAGC 76
||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct 1 ATGGCTTGCAAAACGATTTTGCGTTCCGTTTTCGTATCGGAATCACGACGGACTTCCGGC 60
Query 77 GCAAGTAGATGCTTCTTTCTCCCTCCTTCTCCAGTATCAGTTCCGGTCCATGGTTTGTTC 136
||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 61 GCACGTAGATGCTTCTTTCTCCCTCCTTCTCCAGCATCAGTTCCAGTCCATGGTTTGTTC 120
Query 137 CCGGCGCCAAAGAGTCTCTGTTTCAGTGGTTTTGCATCTGTTCCCGAGCGGGTC-ACTCG 195
||||||||||||||||| ||||||| |||||||||||||||||||||||||| | |||||
Sbjct 121 CCGGCGCCAAAGAGTCTATGTTTCAATGGTTTTGCATCTGTTCCCGAGCGGG-CTACTCG 179
Query 196 GCTTAATTGCAGCCATAACGATCAATCTGATCAAGGCCCGCCCCAAGAAGCTGTTCTCAA 255
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 180 GCTTAATTGCAGCCATAACGATCAATCCGATCAAGGTCCGCCTCAAGAAGCTGTTCTCAA 239
Query 256 GGCAATTTCAGAAGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAATATGATTAT 315
|||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 GGCAATCTC---AGTGTCAAAGACTGATGGGAGGGTTGGGAAAACTACTAACATGATTAT 296
Query 316 TGGTGGCACCGTGGCTGATGATTCTGCTAAAGATTGGCTCGAACTTGACCAAAAGGTCAA 375
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGGAGGCACTGTGGCTGATGATTCTGCTAAAGATTGGCTCGAACTTGACCAAAAGGTCAA 356
Query 376 TACATACCCAACAGAAAGAGGGTTTACTGCAATTGGGACTGGTGGCGATGACTTTGTGCA 435
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 357 TACATACCCAACAGAAAGAGGGTTTACTGCAATTGGGACTGGTGGCAATGACTTTGTGCA 416
Query 436 TGCTATGGTTGTTGCAGTTGAATCCGTTATTGAACGACATATTCCAGAGGATTGTGTAAA 495
||||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 417 TGCTATGGTTGTTGCTGTTGAATCTGTTATTGACCGACAAATTCCAGAGGACTGTGTAAA 476
Query 496 GCAGACGTTATCAAGCAAAGGAAAATATGTGTCGGTGAACATTGGCCCTATCCGAGTTAT 555
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 477 GCAGACTTTATCAAGCAAAGGAAAATATGTGTCGGTGAATATTGGCCCTATCCAAGTCGT 536
Query 556 CTCTAGCGAACAGGTTCAAGCTGTGTATAATGCAATGAGGAGAGACGAAAGAATGAAATA 615
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CTCTAGTGAGCAGGTTCAAGCTGTGTATAATGCAATGAGGAGAGACGAAAGAATGAAATA 596
Query 616 CTTCTTGT 623
||||||||
Sbjct 597 CTTCTTGT 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5