BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472943
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27400.1 | Symbols: | Ribosomal protein L22p/L17e family pr... 1022 0.0
AT1G67430.1 | Symbols: | Ribosomal protein L22p/L17e family pr... 601 3e-171
> AT1G27400.1 | Symbols: | Ribosomal protein L22p/L17e family
protein | chr1:9515135-9516940 FORWARD LENGTH=841
Length=841
Score = 1022 bits (553), Expect = 0.0
Identities = 633/670 (94%), Gaps = 12/670 (2%)
Strand=Plus/Plus
Query 6 GAAGTACTCTCAGGAGCCCGACAAT-TCCACCAAATCTTGCAAGGCAAGAGGAGCCGATC 64
|||||||||||| |||||||| ||| | |||||||||||||||||| |||||||||||||
Sbjct 101 GAAGTACTCTCAAGAGCCCGATAATAT-CACCAAATCTTGCAAGGCGAGAGGAGCCGATC 159
Query 65 TCAGGGTCCACTTCAAGAACACTAGGGAAACAGCGCACGCCATAAGGAAGCTACCATTGA 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 160 TCAGGGTCCACTTCAAGAACACTAGAGAAACAGCGCACGCCATAAGGAAGCTACCATTGA 219
Query 125 ACAAGGCCAAAAGGTACTTGGAAGATGTCATAGCTCACAAGCAAGCTATCCCCTTCACCC 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 ACAAGGCCAAAAGGTACTTGGAAGATGTCATAGCTCACAAGCAAGCTATCCCCTTCACCC 279
Query 185 GTTTCTGTCGTGGTGTTGGTCGTACTGCTCAGGCAAAGAACAGGCATTCTAACGGTCAGG 244
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |
Sbjct 280 GTTTCTGTCGTGGTGTTGGTCGTACCGCTCAGGCAAAGAACAGGCATTCGAACGGACAAG 339
Query 245 GTCGTTGGCCTGCTAAATCTGCTCAGTTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCA 304
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 340 GTCGCTGGCCTGCTAAATCTGCTCAATTCGTTCTTGATCTTCTCAAGAATGCTGAGAGCA 399
Query 305 ATGCTGAGGTCAAAGGTTTGGATGTTGATGCCCTTTTCATTTCTCACATCCAAGTGAACC 364
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 400 ATGCTGAGGTCAAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAACC 459
Query 365 AAGCAGCAAAACAGAGGAGAAGGACTTATCGGGCTCATGGAAGAATCAATCCTTACATGT 424
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 460 AAGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATCCTTACATGT 519
Query 425 CAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTGAAGAAAGAGC 484
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 520 CAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAAGAAGAGCCTGTGAAGAAAGAGC 579
Query 485 CGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCGTCTTGAGCTA-AT-ATAGA 542
|||||||||||||||||||||||||||||||||||||||| |||| ||||| | |||||
Sbjct 580 CGGAGACACAGTTGGCAGCAAAGTCAAAGAAAGGAGCCTCATCTTAAGCTATAACATAGA 639
Query 543 CAGTCTTTTTGTTGTGCTCACTTGTGTTGCCCCCTCAATACATTTTGTTAGCTTCTCTTT 602
|||||| ||||| | |||||||||||| ||| | ||||| ||||||||||||||||
Sbjct 640 CAGTCTATTTGT-G--CTCACTTGTGTTACCCT-T-AATACTTTTTGTTAGCTTCTCT-- 692
Query 603 CCTATAAGACCAAGACCCAATTTTTAAGTATGATGATTATCGGTTTTTGGATTGCTGGAA 662
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 693 C-TATAAGACCAATACTCAATTTTTAAGTATGATGATTATCGGTTTTTGGATTGCTGAAA 751
Query 663 GAACCTCTCT 672
||| ||||||
Sbjct 752 GAATCTCTCT 761
> AT1G67430.1 | Symbols: | Ribosomal protein L22p/L17e family
protein | chr1:25262159-25263789 FORWARD LENGTH=740
Length=740
Score = 601 bits (325), Expect = 3e-171
Identities = 453/515 (88%), Gaps = 8/515 (2%)
Strand=Plus/Plus
Query 6 GAAGTACTCTCAGGAGCCCGACAATTC-CACCAAATCTTGCAAGGCAAGAGGAGCCGATC 64
||||||||| || || |||||||| || ||||| ||||||||||| |||||| ||||||
Sbjct 56 GAAGTACTCGCAAGAACCCGACAA-TCAGACCAAGTCTTGCAAGGCTAGAGGATCCGATC 114
Query 65 TCAGGGTCCACTTCAAGAACACTAGGGAAACAGCGCACGCCATAAGGAAGCTACCATTGA 124
| ||||| ||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 115 TTAGGGTTCACTTCAAGAATACTAGGGAAACAGCGCACGCAATCAGGAAGCTACCATTGA 174
Query 125 ACAAGGCCAAAAGGTA-CTTGGAAGATGTCATAGCTCACAAGCAAGCTATCCCCTTCACC 183
|||||| || ||||| ||| || ||||| ||||||||||||||||| || ||||||||
Sbjct 175 TCAAGGCGAAGAGGTACCTT-GAGGATGTGATAGCTCACAAGCAAGCAATTCCCTTCACA 233
Query 184 CGTTTCTGTC-GTGGTGTTGGTCGTACTGCTCAGGCAAAGAACAGGCATTCTAACGGTCA 242
|||||||| | | |||||||| | |||||||| || ||||||||||| ||||| |||||
Sbjct 234 CGTTTCTG-CAGAGGTGTTGGGAGAACTGCTCAAGCTAAGAACAGGCACTCTAATGGTCA 292
Query 243 GGGTCGTTGGCCTGCTAAATCTGCTCAGTTCGTTCTTGATCTT-CTCAAGAATGCTGAGA 301
|| |||||||| || || ||||||||||| ||||||||| || |||||||| |||||||
Sbjct 293 AGGACGTTGGCCAGCCAAGTCTGCTCAGTTTGTTCTTGAT-TTGCTCAAGAACGCTGAGA 351
Query 302 GCAATGCTGAGGTCAAAGGTTTGGATGTTGATGCCCTTTTCATTTCTCACATCCAAGTGA 361
||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 352 GCAATGCTGAGGTGAAAGGTTTGGATGTTGATGCCCTCTTCATATCACACATCCAAGTGA 411
Query 362 ACCAAGCAGCAAAACAGAGGAGAAGGACTTATCGGGCTCATGGAAGAATCAATCCTTACA 421
|||| || ||||| || |||||||||||||| || ||||| ||||||||||| |||||||
Sbjct 412 ACCAGGCCGCAAAGCAAAGGAGAAGGACTTACCGTGCTCACGGAAGAATCAACCCTTACA 471
Query 422 TGTCAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTGAAGAAAG 481
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 472 TGTCCAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAG 531
Query 482 AGCCGGAGACACAGTTGGCAGCAAAGTCAAAGAAA 516
|||||||||| |||||||| || ||||| ||||||
Sbjct 532 AGCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAA 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5