BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472944
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27410.1 | Symbols: | DNA repair metallo-beta-lactamase fam... 2464 0.0
> AT1G27410.1 | Symbols: | DNA repair metallo-beta-lactamase family
protein | chr1:9517201-9519025 FORWARD LENGTH=1576
Length=1576
Score = 2464 bits (1334), Expect = 0.0
Identities = 1494/1573 (95%), Gaps = 3/1573 (0%)
Strand=Plus/Plus
Query 1 CAAATTTCAAAGAATCAGAAATGGAGAGTGGTCTGATATCAGTGGATCGATGGAGAAAGG 60
||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 6 CAATTTTCAAGGAATCCGAAATGGAGAGTGGTCTGATATCAGTGGATCGATGGAGAAATG 65
Query 61 GAAGTCAAGCCTACTTCTTGACTCATATGCACTCCGATCACACGCGTGGACTCTCCGGCG 120
|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 66 GAAGTCAAGCCTACTTCTTGACTCATATACACTCCGATCACACTCGTGGCCTCTCCGGCG 125
Query 121 GATGGTCCAAAGGTCCTCTCTACTGTTCCCGCATCACCGCCTCTCTATTTCCCTCCCGAT 180
|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 126 GATGGTCCCAAGGTCCTCTCTACTGTTCCCGCACCACCGCCTCTCTATTTCCCTCCCGTT 185
Query 181 TCCCAGGCTTCGACCTCTCCTTGCTTCGCGTCGTCCCTCTCTATTCCTGGACATCTCTCT 240
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 186 TCCCAGGTTTCGACCTCTCCTTGCTTCGCGTCGTCCCTCTCTTTTCCTGGACATCTCTCT 245
Query 241 CCCTCCATTCTCCTTCCTCCGGCTCCACCGTCCGCCTCCATTTCATGGCCATCGATGCTC 300
|||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 246 CCCTCCGCTCTCCTTCCTCCGGCTCCACAGTCCGCCTCCATCTCATGGCCATCGATGCTC 305
Query 301 ACCACTGTCCTGGCTCCATGATGTTTTTGTTCCGGGGTGATTTCGGATGTTTTCTCTACA 360
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 306 ACCACTGTCCTGGATCCATAATGTTTTTGTTCCGGGGAGATTTCGGATGTTTTCTCTACA 365
Query 361 CTGGAGACTTCCGGTGGGATGCTGATGCATCAGACGAAGCCAGAACCATTCTCGTCGATG 420
|||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| | ||
Sbjct 366 CTGGAGACTTCCGGTGGGATTCTGATGCATCAGACGAAGCTAGAACCACTCTCGTTGCTG 425
Query 421 CTATTCACGAATTTCCCGTCGACATTCTTTATTTGGATAACACTTATTGCAATCCAATTT 480
||||| |||| ||||| ||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 426 CTATTGACGAGTTTCCAGTCGACATTCTCTATCTGGATAACACTTACTGCAATCCAATTT 485
Query 481 ACAGTTTTCCTTCCCGTCAAGTCGCTGCTCAATTGGTTGCTGATATAATTGCTTCTCATC 540
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 486 ACAGTTTTCCTTCCCGTCTAGTCGCTGTTCAATTGGTTGCTGATATAATTGCTTCTCATC 545
Query 541 CTTCACATGATATCATCATAGCAGTTGACTCTTTGGGGAAGGAAGAACTACTTCTTCATG 600
||||||||||||||||||||||||||||||||||||| || ||||| || ||| ||||||
Sbjct 546 CTTCACATGATATCATCATAGCAGTTGACTCTTTGGGAAAAGAAGACCTCCTTGTTCATG 605
Query 601 TTTCCCGCATTCTCAATATCAAGATTTGGGTTTGGCCAGAGCGTCTTCGTACTATGCATC 660
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 606 TTTCCCGCATTCTCAATATCAAGATTTGGGTTTGGCCAGAACGTCTTCGTACCATGCATC 665
Query 661 TCCTTGGTTTCCAAGACGTTTTCACTACTGATACATCTCTTACAAGAGTGCGGGCTGTCC 720
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 TCCTTGGTTTCCAAGACATTTTCACTACTGATACATCTCTTACAAGAGTGCGGGCTGTCC 725
Query 721 CTCGTTATAGTTTTAGTATTCAGACTCTCGAGGGGCTGAATACGATGTGCCCAACTATCG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CTCGTTATAGTTTTAGTATTCAGACTCTCGAGGGGCTGAATACGATGTGCCCAACTATCG 785
Query 781 GCATTATGCCGTCTGGTCTCCCATGGGTGAAAACACCTTTCAAAGGAGATGACAAGCTCT 840
| || ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 786 GTATCATGCCTTCAGGTCTCCCATGGGTGAAAAGACCTTTCAAAGGAGATGACAAGCTCT 845
Query 841 CTGGTTCTTTTCTTACTGCAAGTATGAAGAATGAAACCATTTCTGCTCAGAAAGAATTAG 900
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 846 CTGGTTCTTTTCTTACTGCAAGTATGAAGAATGAAACCGTTTCTGCGAAGAAAGAATTAG 905
Query 901 AAGCTGCTGCAGTGCATAAGTTCCATGACTATATGTACTCGGTGCACTACTCTGATCATT 960
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 AAGCAGCTGCAGTGCATAAGTTCCATGACTATATGTACTCGGTGCACTACTCTGATCATT 965
Query 961 CATGCTATGAGGAGATTGGAGAGTTCATTAAACTTGTGAAGCCAAAGAGCATGAAAGGAA 1020
|||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 966 CATGTTATGAGGAGATTGGAGAGTTTATAAAACTTGTGAAACCAAAGAGCATGAAAGGAA 1025
Query 1021 TTGTGGTGTCATCATCATCGTATGTTGACCCTCTTTACTACTTTGGCCGTATCTGTGGAG 1080
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1026 TTGTGGTGTCATCATCATCGTATGTTGACCCTCTTTACTACTTTGGGCGTATCTGTGGAG 1085
Query 1081 CCAACCAACCGCCACAAGTTCTGCTAATGAGGCCTGACATCGCAGATGAATTTCAAGCTG 1140
||||||||||||||||||| ||||| |||||||||||||||||||| ||||||| |||||
Sbjct 1086 CCAACCAACCGCCACAAGTGCTGCTTATGAGGCCTGACATCGCAGAGGAATTTCGAGCTG 1145
Query 1141 TTAGGATCAAGTCATATTCTGCAACTGACAAGACTAGAGTGTTGGaaaaagaaaaaaGGT 1200
||||||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||||
Sbjct 1146 TTAGGATTAAGTCATATTCTGCAAGTGACAAGACTAGAATGTTGGCAAAAGAAAAAAGGT 1205
Query 1201 GGAAGCGAGATAGTCATTCAAGTTTGAAGAGAAACAAGAAGAGAGCACGTATACAAGTAA 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1206 GGAAGCGAGATAGTCATTCAAGTTTGAAGAGAAACAAGAAGAGAGCACGTATCCAAGTAA 1265
Query 1261 AGTGCGCAAAAATTTTAGAGGTTGATTAGCTCTACTTGCCTCTGGGTGGTGTCTCACAAT 1320
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1266 AGTGCGCAAAGATTTTAGAGGTTGATTAGCTCTACTTGCCTCTGGGTGGTGTCTCACGTT 1325
Query 1321 GATGTGGCGGCTTCTTTTTCCTCAAGGTTACAATGTTGTCTATGTGAATGGTCTAATACA 1380
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1326 GATGTGGCGGCTTCTTTTTCCTCAAGGTTACAATGGTGTCTATGTGAATGGTCTAATACA 1385
Query 1381 CAATCCTTTTCTCTGGGGAAGAGTAAGTAAAATTTAAGAAAATATATGAATTAATCAGTT 1440
|||||||||||| |||| | ||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1386 CAATCCTTTTCTATGGG-AGGAGTAAGTAAAATTTAAGATAATATATGAATTATTCAGTT 1444
Query 1441 GAATAGAAAGTCTCTATCTTTTTAAAAAGTAAGCAGTTGTTTGTATATGCTTAGTTGACA 1500
|||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 1445 GAATAGAAAGTCACTATCTTTT-AAAAAGTAAGCAGTTGTTTGTTTATGCTTAGTTAACA 1503
Query 1501 AAATCCTGATTTT-AAATTCGAAAACACTTGGTCAATGTTTTTGTCTTTTGTATGTTATC 1559
|| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 AAGTCTTGATTTTTAAATTCGAAAACACTTGGTCAATGTTTTTGTCTTTTGTATGTTATC 1563
Query 1560 CAAATGATTACTC 1572
|||||||||||||
Sbjct 1564 CAAATGATTACTC 1576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77610042570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5