BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472948
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27440.1 | Symbols: GUT2, IRX10, ATGUT1 | Exostosin family p... 2278 0.0
> AT1G27440.1 | Symbols: GUT2, IRX10, ATGUT1 | Exostosin family
protein | chr1:9529141-9531375 REVERSE LENGTH=1525
Length=1525
Score = 2278 bits (1233), Expect = 0.0
Identities = 1435/1531 (94%), Gaps = 20/1531 (1%)
Strand=Plus/Plus
Query 1 ATTCACATCTTCCTTGTGAATAAAATAAACCCTAAAACCTAATCCCGAAGTAAACTCGTC 60
|||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATTCACGTCTTCCTTCTGAATAAAATAAACCCTAAAACCTAATACCGAAGTAAACTCGTC 60
Query 61 AACCACTGCGCCCATGACCTCCCAACGATACTCTTCCCTTATATGCTTCCTCTTCCTTCT 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 AACCACTGCGCCCATGACCTCCCAACGATACTCTTCCCTTATATTCTTCCTCTTCCTTCT 120
Query 121 TCCTTTCTGGGATCCAAACCTTCGCACACATCTCCGGTAGATATGAAGATTCGCTCTTAC 180
||||||||| ||||||||||||| |||||||||||||||||||||| || | ||||| |
Sbjct 121 TCCTTTCTGCGATCCAAACCTTCAAACACATCTCCGGTAGATATGAAAATCCACTCTTGC 180
Query 181 CTCTCGGCCATTCTTCTGTTCCTCTTCTTCTCCGCTTCTTCCTCTGAACAAAATGTCCGG 240
||||| |||||||||||||||||||||||||| ||||||||| || |||||||||| |||
Sbjct 181 CTCTCCGCCATTCTTCTGTTCCTCTTCTTCTCTGCTTCTTCCGCTAAACAAAATGTTCGG 240
Query 241 ACAGAGCGAATTTCAGGAAGTGCTGGTGATGTTTTGGAGGATAATCCAGTGGGAAAGCTT 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 ACAGAGCGAATTTCAGGAAGTGCTGGTGATGTTTTGGAGGATGATCCAGTGGGAAAGCTT 300
Query 301 AAGGTTTATGTATACGATCTTCCAAGCAAGTACAACAAGAAATTACTCCAAAAGGATCCT 360
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AAGGTTTATGTATATGAGCTTCCAAGCAAGTACAACAAGAAATTACTGCAAAAGGATCCT 360
Query 361 CGATGTCTTACACACATGTTTGCTGCTGAGATTTTTATGCACAGGTTCCTTTTATCTAGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CGATGTCTTACACACATGTTTGCTGCTGAGATTTTTATGCACAGGTTCCTTTTATCTAGT 420
Query 421 CCTGTTAGAACCCGTAATCCCGATGAAGCTGATTGGTTTTACACGCCAATTTATCCTACT 480
|||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTGTTCGAACGCGTAATCCTGATGAAGCTGATTGGTTTTACACGCCAATTTATCCTACT 480
Query 481 TGCGATCTCACTCCTACCGGCTTGCCATTGCCTTTTAAATCCCCGCGTATGATGAGAAGT 540
||||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 481 TGCGACCTCACTCCTACCGGCTTGCCATTACCGTTTAAATCGCCGCGTATGATGAGAAGT 540
Query 541 GCGATACAATTAATTTCATCGAATTGGCCTTATTGGAATCGGACAGAAGGAGCTGATCAC 600
|||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 541 TCGATACAACTAATCTCATCAAATTGGCCTTATTGGAATCGGACTGAAGGAGCTGATCAC 600
Query 601 TTCTTTGTTGTTCCCCATGACTTTGGAGCTTGCTTCCATTATCAGGAGGAAAAAGCCATT 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTCTTTGTTGTGCCCCATGACTTTGGAGCTTGCTTCCATTATCAGGAGGAAAAAGCCATT 660
Query 661 GAAAGAGGGATACTTCCGCTTCTCCAGCGTGCCACTTTGGTTCAGACATTTGGTCAAAGG 720
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAAAGAGGGATACTTCCACTACTCCAGCGTGCCACTTTGGTTCAGACATTTGGTCAAAGG 720
Query 721 AACCATGTCTGTTTGGACGAAGGCTCGATCACTATTCCTCCTTTTGCACCTCCACAGAAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AACCATGTCTGTTTGGACGAAGGCTCGATCACTATTCCTCCTTTTGCACCTCCACAGAAG 780
Query 781 ATGCAGGCCCATTTTATTCCTCCAGATATTCCACGTTCTATCTTTGTCTACTTCCGCGGT 840
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 781 ATGCAGGCCCATTTTATTCCTCCAGATATTCCACGCTCTATCTTTGTCTACTTCCGCGGT 840
Query 841 TTATTCTATGATGTTAACAACGACCCAGAAGGGGGCTATTATGCAAGAGGTGCAAGAGCA 900
||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 841 TTATTTTATGATGTTAACAACGACCCCGAAGGTGGATATTATGCAAGAGGTGCAAGAGCA 900
Query 901 GCGGTGTGGGAGAACTTCAAAAACAACCCTCTATTCGACATCTCAACAGATCACCCGACA 960
|||||||||||||||||||| ||||||||| | || ||||||||||||||||||||||||
Sbjct 901 GCGGTGTGGGAGAACTTCAAGAACAACCCTTTGTTTGACATCTCAACAGATCACCCGACA 960
Query 961 ACATACTACGAAGACATGCAAAGAGCCATCTTTTGTCTATGTCCTCTAGGATGGGCTCCA 1020
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 961 ACATACTACGAAGACATGCAGAGAGCCATCTTCTGTCTATGTCCTCTAGGATGGGCTCCA 1020
Query 1021 TGGAGCCCGAGGTTAGTTGAAGCGGTTGTGTTTGGGTGTATTCCAGTTATCATAGCGGAC 1080
|||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 1021 TGGAGCCCTAGGTTAGTTGAAGCAGTTGTGTTTGGGTGCATTCCAGTTATCATAGCAGAC 1080
Query 1081 GACATAGTACTGCCTTTCGCAGACGCCATCCCCTGGGAAGAAATAGGAGTCTTTGTTGCA 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GACATAGTACTGCCTTTCGCAGACGCCATCCCCTGGGAAGAAATAGGAGTCTTTGTTGCG 1140
Query 1141 GAAAAAGACGTCCCTGAACTAGACACGATCCTAACCTCAATACCAACAGAAGTGATCCTC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GAAAAAGACGTCCCTGAACTAGACACGATCCTAACCTCAATACCAACAGAAGTGATCCTC 1200
Query 1201 AGGAAACAGAGACTCCTCGCAAATCCTTCGATGAAACGAGCCATGCTTTTCCCTCAACCA 1260
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AGAAAACAGAGACTCCTCGCAAATCCTTCGATGAAACGAGCCATGCTTTTCCCTCAACCT 1260
Query 1261 GCGCAACCAGGGGATGCATTCCATCAGATACTTAACGGGTTGGCTCGGAAGTTGCCTCAC 1320
|| |||||||||||||||||||||||||||||||||||| | ||||||||||| || |||
Sbjct 1261 GCACAACCAGGGGATGCATTCCATCAGATACTTAACGGGCTAGCTCGGAAGTTACCCCAC 1320
Query 1321 GACAAAAGTATATACTTGAAGGCAGGTGAGAAGGAACTGAATTGGACTGCTGGTCCGGTT 1380
|||||||| |||||||||||| |||||||||||| |||||| ||||||||||||||||||
Sbjct 1321 GACAAAAGCATATACTTGAAGACAGGTGAGAAGGCACTGAACTGGACTGCTGGTCCGGTT 1380
Query 1381 GGTGACCTTAAACCTTGGTAAACTCAGAA-GA-ATTAAATGTCTTGTTTGTC-ACCTTAG 1437
| |||||| ||||||||||||| |||||| || | || | ||| ||||| | ||| |
Sbjct 1381 GCTGACCTGAAACCTTGGTAAAGTCAGAAAGAGAGGAA-T--CTT-TTTGTATATCTTGG 1436
Query 1438 AGTTA-A--TAAGAGCATATGTTGTTGCCtttttttAGCACTT-AAAAACATTAGA-GTC 1492
||| | || ||||||| |||||||||||| | |||||||| |||||||||||| |||
Sbjct 1437 -GTTTCACCTA-GAGCATACGTTGTTGCCTTTCTATAGCACTTCAAAAACATTAGAAGTC 1494
Query 1493 C---TCC---GTGTGGATTATTTTTGTAGAT 1517
| ||| | ||||||| |||||||||||
Sbjct 1495 CAAGTCCTCCGAGTGGATTTTTTTTGTAGAT 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74849012595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5