BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472957
Length=2036
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27520.1 | Symbols: | Glycosyl hydrolase family 47 protein ... 3278 0.0
> AT1G27520.1 | Symbols: | Glycosyl hydrolase family 47 protein
| chr1:9558635-9562381 FORWARD LENGTH=2132
Length=2132
Score = 3278 bits (1775), Expect = 0.0
Identities = 1966/2056 (96%), Gaps = 21/2056 (1%)
Strand=Plus/Plus
Query 1 TTGTTCTAATCGAGAGATCAGACGCGGCGGAGAGTGGAAGAGATGATCAATTCATAAATT 60
||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||
Sbjct 1 TTGTTCTAATCGAGAGATCAGACGCGGCGGAGACTGGCGGAGATGATGAATTCATAAATT 60
Query 61 CCTTCTTCTCC-TAATTCTCTTTTCATGTGATTGG---CTT------C-T--TCATCATG 107
||||||||||| | ||||||||||| ||||||| ||| | | ||||||||
Sbjct 61 CCTTCTTCTCCTTTCCTCTCTTTTCATTTGATTGGCTTCTTACACAGCTTCGTCATCATG 120
Query 108 TCTTGTCCTCTCCATCCAAAGCGTCTCTTCCTCTGCTTGCTTATTTCTCTCGCTTTCTTC 167
||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 TCTTGTCCTATCCATCCTAGGCGTCTCTTCCTCTGCTTGCTTATTTCTCTCACTTTCTTC 180
Query 168 GTCGTCGACCCTTCATCGCAGCATCTCGAGGTCAAGAAGAAACAAATGCGAGAGAAAGTA 227
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GTCGTCGACCCTTCATCGCAGCATATCGAGGTCAAGAAGAAACAAATGCGAGAGAAAGTA 240
Query 228 CGCGAGATGTTCTATCATGCGTATGACAATTACATGACTTATGCATTTCCGCATGATGAG 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGCGAGATGTTCTATCATGCGTATGACAATTACATGACTTATGCATTTCCGCATGATGAG 300
Query 288 CTAAAGCCTCTAACAAAAAGTTTCACAGACTCCCTCAGTGAGCTTGGAAATCTTAAGCTT 347
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTAAAGCCTCTAACTAAAAGTTTCACAGACTCCCTCAGTGAGCTTGGAAATCTTAAGCTT 360
Query 348 GAACACCTGCCAACAGATTATAATGGATCAGCTGTTACACTTGTTGAATCCTTATCCAGC 407
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 361 GAACACCTGCCAACAGATTATAATGGATCAGCTGTTACTCTTGTTGAATCATTATCCAGC 420
Query 408 CTTGCTATATTGGGAAACAGTACAGAATTTGAAAAGGGGATTCTCTGGCTCTCAGAAAAT 467
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 421 CTTGCTATATTGGGGAACAGTACAGAATTTGAAAAGGGGGTTCTCTGGCTCTCAGAAAAT 480
Query 468 CTAACATTCGATATTGATGCCCGGGTCAACCTTTTTGAGTGCAATATAAGAGTTCTTGGA 527
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTACTTTCGATATTGATGCCCGGGTCAACCTTTTTGAGTGCAATATAAGAGTTCTTGGA 540
Query 528 GGACTTATCTCTGCTCATCTTCTTGCAATTGATCCAACTAATAGGTTAATTCAGGGTTCC 587
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 541 GGACTTATCTCTGCTCATCTTCTTGCAATTGATCCAAATAATAGGTTGATTCAGGGTTCC 600
Query 588 TACAACAATCAGCTTCTTCGATTAGCTGAAGACCTTGGAAAACGCTTTTTGCCAGCGTTT 647
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 601 TACAACAATCAGCTTCTTCGATTAGCTGAAGACCTTGGAAAACGTTTTTTACCCGCGTTT 660
Query 648 GAAACACCTACAGGATTACCATATGCATGGATTAATTTGAAGAATGGAGTAATGGAGAAT 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAAACACCTACAGGATTACCATATGCATGGATTAATTTGAAGAATGGAGTAATGGAGAAT 720
Query 708 GAGACAACTGAAACAAGTACTTCAGGATGTGGTTCTCTCATTCTTGAAATGGGATCATTG 767
||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||
Sbjct 721 GAGACAACTGAAACAAGCACTTCAGGATGTGGTTCTCTCGTTCTTGAAATGGGAGCATTG 780
Query 768 TCACGGCTCACTGGTGACCCTAGATTTGAATCAGCTGCACTACGTGCGCTTCGTCAGCTA 827
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 781 TCACGGCTCACTGGTGACCCGAGGTTTGAATCAGCTGCACTACGTGCGCTTCGTCAGCTA 840
Query 828 TGGAGGATGCGAAGTTCGTTAGATCTGCTTGGGACGACATTGGATGTGGTAACTGGGGAA 887
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 TGGAGGATGCGAAGTTCGTTAGATCTGCTTGGGACAACATTGGATGTGGTAACTGGGGAA 900
Query 888 TGGATAGAGTACTCCTCCAGCATTGGAGCTGGGGTTGACTCTTTCTATGAATACCTCTTG 947
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGGATAGAGTACTCCTCTAGCATTGGAGCTGGGGTTGACTCTTTCTATGAATACCTCTTG 960
Query 948 AAGGCTTATATTCTTTTTGGAAAAGAAGACTACTGGCGAATGTTTCGTTCTGCTTATATG 1007
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 961 AAGGCTTATATTCTTTTTGGAAAAGAAGACTACTGGCGAATGTTTCATTCTGCTTATCTG 1020
Query 1008 GCATCTCAGAAGTACTTCAGACATGGGCCTTGGTACCATGAAGCTAATATGTGGAGTGGA 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GCATCTCAGAAGTACTTCAGACATGGGCCTTGGTACCATGAAGCTAATATGTGGAGTGGA 1080
Query 1068 AAACCAACTTACTGGCAGCTCACAAGTCTTCAGGCGTTTTGGCCTGGTCTGCAGGTTCTT 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AAACCAACTTACTGGCAGCTCACAAGTCTTCAGGCGTTTTGGCCTGGTCTGCAGGTTCTT 1140
Query 1128 GTTGGAGATATCGCAGCTGCAAATTCATCGCACCGCGAGTTTTTCCATGTATGGGAAAAG 1187
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1141 GTTGGAGATATTGCAGCTGCAAATTCATCGCATCGTGAGTTTTTCCATGTATGGGAAAAG 1200
Query 1188 TTTGGTGTATTACCTGAGAGGTATCTACTGGATCATCAAATCATACATCCGACAATGAAG 1247
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1201 TTTGGTGTATTACCTGAGAGGTATCTACTCGATCATCAAATAATACATCCGACAATGAAG 1260
Query 1248 TACTATCCACTACGTCCTGAATTAGCAGAATCCACGTTCTACCTATACCAAGCTACAAAA 1307
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1261 TACTATCCACTACGTCCTGAATTAGCAGAATCCACGTTCTACCTTTACCAAGCTACAAAA 1320
Query 1308 GATCCATGGTATCTAGATGTTGGTGAAACAATTGTAAAATCTCTTAATCTGTACACAAAG 1367
||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||
Sbjct 1321 GATCCATGGTATCTAGATGTTGGTGAATCAATGGTAAAATCTCTTAATCTCTACACAAAG 1380
Query 1368 GTGCCAGGGGGATTTGCAAGTGTTAGAGATGTGACGACCATGCAACTGGAAGATCATCAG 1427
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1381 GTGCCAGGGGGATTTGCAAGTGTTAGAGATGTGACGACCATGCAATTGGAAGATCATCAG 1440
Query 1428 CACAGTTTCTTTCTCGCTGAAACGTGCAAGTACTTATATCTCCTCTTCGATGATTCATTT 1487
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1441 CACAGTTTCTTTCTCGCTGAAACGTGCAAGTACCTATATCTCCTCTTCGATGACTCATTT 1500
Query 1488 GTGGCCAAAAGGAATTATATATTTACAACCGAGGGCCATCCTATACAGGTTGTGAGCTCC 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GTGGCCAAAAGGAATTATATATTTACAACCGAGGGCCATCCTATACAGGTTGTGAGCTCC 1560
Query 1548 TGGCATGAGAAACTACCAGAAAATTATTTCTCAGGCAACTGGACCCTTTCAAAGAGTGGA 1607
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1561 TGGCATGAGAAACTACCAGAAACTTATTTCTCAGGCAACTGGACCCTTTCAAAGAGTGGA 1620
Query 1608 TCATGGGAAAGTAGAGCAAGCGCATTGTCACTGCAAGTCTGTCCA-TCGATAGCTCTTAA 1666
||||||||||| |||| |||||||||||||| |||||||||||| | |||| |||||||
Sbjct 1621 GCATGGGAAAGTCGAGCTAGCGCATTGTCACTACAAGTCTGTCCACT-GATATCTCTTAA 1679
Query 1667 CTCTAGACGTCCTGAGCAACACAGAGAGAGTGCTTGCCATGTTCCTGACGTGCAAATCAA 1726
|||||||| |||||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 1680 CTCTAGACATCCTGAGCAACAAAGAGAGAGTGCTTGCCATGTTCTTGACGAGCAAATCAA 1739
Query 1727 TCATAAGTGTTGGAGCAACAAAGAGTGTGGAGTTGATGCCACTACTTGTAGACTAAGAAC 1786
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1740 TCATAAGTGTTGGAGCAACAAAGAGTGCGGAGTTGATGCCACTACTTGTAGACTAAGAAC 1799
Query 1787 CTGCAGCGGGGTTGGATACTGCGGCTTATGGAATCCCTTATAACTTTGGACACAAAACAG 1846
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1800 CTGCAGCGGGGTTGGATACTGCGGCTTATGGAATCCCTTATAACTTTTGACACAAAACAG 1859
Query 1847 TGGGGTTTTGGGTTTCAGTAAAGGAAAGAGAAGAGGTGGGGTTTATGAACTGATACTGTA 1906
|||||| |||||||| | ||||||||||||||||||||| ||||| ||||||| ||||||
Sbjct 1860 TGGGGTCTTGGGTTTTAATAAAGGAAAGAGAAGAGGTGGAGTTTACGAACTGAAACTGTA 1919
Query 1907 AATTAATGTGAAATGACAAGTTTTGGTTGACAGAAAATGGATAGTTGTTGCATGAGGCTG 1966
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1920 AATTAATGCGAAATGACAAGTTTTGGTAGACAGAAAATGGATAGTTGTTGCATGAGGCTG 1979
Query 1967 TTGTATCTTTTTCTTTGAGTCATCAGTCTTGACTTGGATATATA-T-AT-TA-T--GGGA 2020
|||||||||||||||||| ||||||||| |||| |||||||||| | || || | ||||
Sbjct 1980 TTGTATCTTTTTCTTTGATTCATCAGTCCTGACATGGATATATAGTTATATACTATGGGA 2039
Query 2021 GGATCAACCTCGATCA 2036
||||||||||||||||
Sbjct 2040 GGATCAACCTCGATCA 2055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100903095450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5