BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472958
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27530.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin... 1247 0.0
> AT1G27530.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating
enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold
modifier-conjugating enzyme 1 (InterPro:IPR014806);
Has 269 Blast hits to 269 proteins in 110 species: Archae -
0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses
- 0; Other Eukaryotes - 52 (source: NCBI BLink). | chr1:9562591-9563963
REVERSE LENGTH=771
Length=771
Score = 1247 bits (675), Expect = 0.0
Identities = 723/747 (97%), Gaps = 0/747 (0%)
Strand=Plus/Plus
Query 1 AATCAGAATCAAGCATCCGATTCCGATCGACAAATAGGGTTTTGAATTCACACGCCCAAA 60
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 1 AATCAGAATCAAGCATCCGATTCCGATCGACAAATAGGGTTTAGAATCCACACACCCAAA 60
Query 61 TCGGTAGGCGAAGAAAATGGAAGGATGGGATCCGAACACGAAGTCGACGTTAACGCGAAT 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGGAAGGCGAAGAAAATGGAAGGATGGGATCCGAACACGAAGTCGACGTTAACGCGAAT 120
Query 121 ACCGCTTCTGACGACAAAGGCGGGTCCAAGAGACGGCGCGGCGTGGACGCAGAGGCTGAA 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 ACCGCTTCTGACGACAAAGGCGGGTCCAAGAGACGGCGCGGCATGGACGCAGAGGCTGAA 180
Query 181 AGAAGAGTACAAGTCTCTGATTGCGTATACCCAAATGAACAAGTCCAACGATAATGACTG 240
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 AGAGGAGTACAAGTCTCTGATTGCGTATACCCAAATGAACAAGTCCAACGACAATGACTG 240
Query 241 GTTCCGTATCTCTGCTTCCAATCCTGAAGGAACGCGTTGGACTGGCAAGTGTTGGTATGT 300
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 241 GTTCCGTATCTCCGCTTCCAATCCTGAGGGCACGCGTTGGACTGGCAAGTGTTGGTATGT 300
Query 301 TCACAATCTTCTCAAATACGAATTCGATCTCCAGTTCGATATCCCTATCACCTACCCAGC 360
|||||| |||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 301 TCACAACCTTCTCAAATACGAATTCGATCTCCAGTTCGATATCCCGATTACCTATCCAGC 360
Query 361 CACTGCTCCTGAGCTTGAGCTGCCTGAGATTGATGGCAAGACCCAGAAGATGTATCGAGG 420
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 361 CACTGCTCCTGAGCTTGAGCTGCCTGAGATTGACGGCAAGACTCAAAAGATGTATCGAGG 420
Query 421 TGGGAAGATATGTTTGACTGTGCATTTCAAGCCTCTCTGGGCCAAAAACTGTCCTCGGTT 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 TGGGAAGATATGTTTGACTGTGCATTTCAAGCCTCTATGGGCCAAAAACTGTCCTCGGTT 480
Query 481 TGGTATAGCACATGCACTTTGTTTGGGGCTCGCTCCGTGGCTAGCTGCAGAGATTCCAAT 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 TGGTATAGCACATGCACTTTGTTTGGGGCTCGCTCCGTGGTTAGCTGCAGAGATTCCAAT 540
Query 541 TCTTGTGGACTCCGGCGCTATTAAGCACAAAGATGACGCAGCCACATCTGCGGAATCTTA 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCTTGTGGACTCCGGCGCGATTAAGCACAAAGATGACGCAGCCACATCTGCGGAATCTTA 600
Query 601 AATCTATGTAACCTTTATATCAATCTCAGAAATGTTGAGGTGTTTATCAGTAATAGCTGA 660
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATCTATGTAACCTTTCTATCAATCTCAGAAATGTTGAGGTGTTTATCAGTAATAGCTGA 660
Query 661 ACTCAGAAATGACTGAGGTGGCTGCGTCTACCCTATAAAAACACTTACATGAAACCCAAT 720
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 661 ACTCAGAAATGACTGAGGTGGATGCGTCTACCCTATAAATACACTTACATGAAACCCAAT 720
Query 721 AAAGATTTAAGCTATTGTAATGTTTTT 747
||||||||||||||||| |||||||||
Sbjct 721 AAAGATTTAAGCTATTGCAATGTTTTT 747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5