BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472963
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26520.1 | Symbols: | Cobalamin biosynthesis CobW-like prot... 972 0.0
AT1G26530.1 | Symbols: | PIN domain-like family protein | chr1... 475 5e-133
> AT1G26520.1 | Symbols: | Cobalamin biosynthesis CobW-like protein
| chr1:9163246-9165900 REVERSE LENGTH=1633
Length=1633
Score = 972 bits (526), Expect = 0.0
Identities = 699/776 (90%), Gaps = 38/776 (5%)
Strand=Plus/Plus
Query 736 CGTGACTCATCCTCGTTTCCCAAGGCTTTTAATCAAATAGCATTTGCGGACACGATAATA 795
|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 853 CGTGACTCATCCTCGTTTCCTGAGGCCTTTAATCAAATAGCATTTGCGGACACGATAATA 912
Query 796 ATGAACAAGGTGGACTTGATTTCTCAAAAGGAATCTGATGAATTAGAGAAGGAGATTCAT 855
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 913 ATGAACAAGGTGGACTTGATTTCTCAAGAGGAGTCTGATGAATTAGAGAAGGAGATTCAT 972
Query 856 TCCATCAACTCGCTCGCCAATGTCATCCGATCTGTTAGGTGCCAAGTTGATTTGTCCAAT 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 TCCATCAACTCGCTCGCCAATGTCATCCGATCTGTTAGGTGCCAAGTTGATTTGTCCAAT 1032
Query 916 ATATTGAACTGCCAGGCATATGATTCAACTCATGTTAGTCGTCTGGAATCCCTGCTGGAA 975
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 ATATTAAACTGCCAGGCATATGATTCAACTCATGTTAGTCGTCTGGAATCCCTGCTGGAA 1092
Query 976 GCAAATAAATCATTAACGACGACAGATCTTCACGACAGTGGAGTAAGGACACTATGCATC 1035
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1093 GCAAATAAATCATTAACGACGACAGATCTTCACGATAGTGGAGTAAGGACTCTATGCATC 1152
Query 1036 AGCGAACCGCAACCTATAAACCTCGATAAGGTTCGTTTATGGTTGGAGGAAATTCTGTGG 1095
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1153 AGCGAACCGCAACCTATAAACCTCGATAAGGTTCGTTTATGGCTGGAGGAAATTCTGTGG 1212
Query 1096 GATAAAAAATCGGAGATG--T-T-----G---CAAGGCGGTGTTGAGCATTCAAAACTCA 1144
|||||||||||||||||| | | | |||||| |||||||||||||||||||||
Sbjct 1213 GATAAAAAATCGGAGATGGATGTATACCGTTGCAAGGCTGTGTTGAGCATTCAAAACTCA 1272
Query 1145 GACCAGCTGCACAT---G-A-------AGAGATATAT--GAGATAGTGCCAGCGCGAAAA 1191
|||||| |||| || | | |||||||||| |||||||||||||| ||||||
Sbjct 1273 GACCAGATGCATATTTTGCAGGCCGTTAGAGATATATATGAGATAGTGCCAGCTCGAAAA 1332
Query 1192 TGGAGCGAGGAAGAGAATCGAATCCAACAAAATAG-A------G-ACA-AA-CTGGATGA 1241
|||||||||||||||||||||| | |||||||||| | | ||| || ||||||||
Sbjct 1333 TGGAGCGAGGAAGAGAATCGAA-CAAACAAAATAGTATTTATAGGACACAAACTGGATGA 1391
Query 1242 AGAAGTTCTTAGAAGCGGATTAAGAGATTGCAGACCCTAAAAGGAAAACGCAAACTTGCA 1301
||||||||| ||||||||||||||||||||||||||||| | | |||| |||||||||||
Sbjct 1392 AGAAGTTCTCAGAAGCGGATTAAGAGATTGCAGACCCTAGATGAAAAA-GCAAACTTGCA 1450
Query 1302 GTAACAACCAGATTGGTCTATCCTGGTTTCCGTTTAAGTCTTACCGTCATGCAGAATACT 1361
|| ||||| |||||||||| | | ||||| |||| ||||||||||| | ||||||
Sbjct 1451 GTGACAACTAGATTGGTCTTTTTTTTTTTCCCCCCAAGTTTTACCGTCATGAACAATACT 1510
Query 1362 TTGATCAATTTTTGTATAATATATAACAACTGTGTAAGGTTAT-TAGGTGTTTCAATTAA 1420
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||
Sbjct 1511 CTGATCAATTTTTGTATAATATATAACAAGTGTGTAAGGTTATATAGGTGTTTCAGTTAA 1570
Query 1421 CGTCTTTACACTCCTGGTTTACC-CTGTAAGCAAATCCAAAGGAAGAAGATTTATG 1475
||||||||||||||||||||| |||||||||||||||||| ||||||||| |||
Sbjct 1571 CGTCTTTACACTCCTGGTTTAATTCTGTAAGCAAATCCAAAGCAAGAAGATTGATG 1626
Score = 819 bits (443), Expect = 0.0
Identities = 645/738 (87%), Gaps = 31/738 (4%)
Strand=Plus/Plus
Query 24 TGCTCCCTTTCGAAACAGAAGACAAC--GACCACTTTAGTTC-T--TCTTCCCTCAGATG 78
||||| ||||| ||||| |||||||| || |||||||||| | ||||| ||||||||
Sbjct 88 TGCTCTCTTTCAAAACAAAAGACAACGAGAGAACTTTAGTTCTTGCTCTTCTCTCAGATG 147
Query 79 CAAGAATCGAGCAGAGAGATTGAGAAAGATATTTGTTTGTT-AAAATTAGGGGTTTGAGT 137
|||||||||||||||| || || |||| ||||||||||| |||||||||| |||||||
Sbjct 148 CAAGAATCGAGCAGAG-GA--GACTAAGA-ATTTGTTTGTTAAAAATTAGGGTTTTGAGT 203
Query 138 CGTTTGACATTTTAACCAAACCAAACCGAACCGAACCAAGCTGATGTGGGCTCGGCCCAT 197
|||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 204 CGTTTGACATTTTAACCAAACCGAACCGAACCGAACCAAGCTAATGTGAGCTCGGCCCAT 263
Query 198 ATACGGAGCTCTGTCTCTTACGGCGTCTCTGCATAAACCGGCGATGCTGAA-G--GAAGC 254
||| |||||||||||| |||||||||||||||||| ||||||||||||||| | |||||
Sbjct 264 ATATGGAGCTCTGTCTTTTACGGCGTCTCTGCATATACCGGCGATGCTGAAGGAAGAAGC 323
Query 255 TGAGCGAGTAAAAATGG-AG--GATGATGAAAAACCACAGATGGCTATTCAAATTCAACC 311
|||| |||| ||||||| || ||||||||| |||||| ||||||| ||||||| || ||
Sbjct 324 TGAGGGAGTGAAAATGGAAGATGATGATGAAGAACCACCGATGGCTGTTCAAATCCATCC 383
Query 312 GGATGTTTCTGTCGGAAAGATTCTCTCATCAAGCGACACTGTTTCAGTTGGTGTCTCTGT 371
||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||
Sbjct 384 GGATGTTTCTGTCGGAAAGGTTCACTCATCAAGCGATACTGTTTCAGTTGGTGTGTCTGT 443
Query 372 TATCACTGGCTATCTCGGCGCGGGAAAATCCCCCCTTGTGAATTATATATTGAACGGGAA 431
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 444 TATCACTGGCTATCTCGGCGCGGGAAAATCCACTCTTGTGAATTATATATTGAACGGGAA 503
Query 432 ACACGGGAAGAGAATAGCTGTGATTTTGAATGAGTATGGGGAAGAGATTGGAGTTGAGAG 491
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 504 ACACGGGAAGAGAATAGCTGTGATTTTGAATGAGTTTGGGGAAGAGATTGGAGTTGAGAG 563
Query 492 GGCTATGATTAACCAAGGAGAAGAAGGTGCCATTTTTGAAGAATGGGTTGAGCTTGCGAA 551
||||||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||
Sbjct 564 GGCTATGATTAACGAAGGAGAAGAAGGTGCCATTGTTGAAGAATGGGTTGAGCTCGCTAA 623
Query 552 TGGCTGT-TT-GCTGCACTCTTGTTCAGA-TAAAAGA-CA-GACTATCC-GCTT-TTGCT 604
||||||| || | || ||| | || | | | || | || || || ||| |
Sbjct 624 TGGCTGTGTTTGTTGTACTGTCAAGCATAGTCTT-GTTCAAG-CTCTCGAGCAGCTTG-T 680
Query 605 TTCTCA-AAT-G-CAGGCTTGATCATATATTGCTAAAGACAACAGGTTTAGCAAATCCGG 661
| | | || | |||||||||||||||||| | ||||||||||||||||||| || |
Sbjct 681 T-CAGAGAAAAGACAGGCTTGATCATATATTATTGGAGACAACAGGTTTAGCAAACCCAG 739
Query 662 CTCCATTGGCTTCTATTCTTTGGTTGGATGAGCAGTTAGAATCATAAGTCAAGCTTGACT 721
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 740 CTCCATTGGCTTCTATTCTTTGGTTGGATGACCAGTTAGAATCAGAAGTCAAGCTTGACT 799
Query 722 GCATTGTTACTCGCCGTG 739
| ||||||||| | ||||
Sbjct 800 GTATTGTTACT-GTCGTG 816
> AT1G26530.1 | Symbols: | PIN domain-like family protein | chr1:9165360-9167490
FORWARD LENGTH=1259
Length=1259
Score = 475 bits (257), Expect = 5e-133
Identities = 349/391 (89%), Gaps = 16/391 (4%)
Strand=Plus/Minus
Query 24 TGCTCCCTTTCGAAACAGAAGACAAC--GACCACTTTAGTTC-T--TCTTCCCTCAGATG 78
||||| ||||| ||||| |||||||| || |||||||||| | ||||| ||||||||
Sbjct 454 TGCTCTCTTTCAAAACAAAAGACAACGAGAGAACTTTAGTTCTTGCTCTTCTCTCAGATG 395
Query 79 CAAGAATCGAGCAGAGAGATTGAGAAAGATATTTGTTTGTT-AAAATTAGGGGTTTGAGT 137
|||||||||||||||| || || |||| ||||||||||| |||||||||| |||||||
Sbjct 394 CAAGAATCGAGCAGAG-GA--GACTAAGA-ATTTGTTTGTTAAAAATTAGGGTTTTGAGT 339
Query 138 CGTTTGACATTTTAACCAAACCAAACCGAACCGAACCAAGCTGATGTGGGCTCGGCCCAT 197
|||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||
Sbjct 338 CGTTTGACATTTTAACCAAACCGAACCGAACCGAACCAAGCTAATGTGAGCTCGGCCCAT 279
Query 198 ATACGGAGCTCTGTCTCTTACGGCGTCTCTGCATAAACCGGCGATGCTGAA-G--GAAGC 254
||| |||||||||||| |||||||||||||||||| ||||||||||||||| | |||||
Sbjct 278 ATATGGAGCTCTGTCTTTTACGGCGTCTCTGCATATACCGGCGATGCTGAAGGAAGAAGC 219
Query 255 TGAGCGAGTAAAAATGG-AG--GATGATGAAAAACCACAGATGGCTATTCAAATTCAACC 311
|||| |||| ||||||| || ||||||||| |||||| ||||||| ||||||| || ||
Sbjct 218 TGAGGGAGTGAAAATGGAAGATGATGATGAAGAACCACCGATGGCTGTTCAAATCCATCC 159
Query 312 GGATGTTTCTGTCGGAAAGATTCTCTCATCAAGCGACACTGTTTCAGTTGGTGTCTCTGT 371
||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||
Sbjct 158 GGATGTTTCTGTCGGAAAGGTTCACTCATCAAGCGATACTGTTTCAGTTGGTGTGTCTGT 99
Query 372 TATCACTGGCTATCTCGGCGCGGGAAAATCC 402
|||||||||||||||||||||||||||||||
Sbjct 98 TATCACTGGCTATCTCGGCGCGGGAAAATCC 68
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5