BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472968
Length=1514
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27630.1 | Symbols: CYCT1;3 | cyclin T 1;3 | chr1:9611103-96... 2242 0.0
> AT1G27630.1 | Symbols: CYCT1;3 | cyclin T 1;3 | chr1:9611103-9614336
FORWARD LENGTH=1529
Length=1529
Score = 2242 bits (1214), Expect = 0.0
Identities = 1432/1532 (93%), Gaps = 35/1532 (2%)
Strand=Plus/Plus
Query 1 AGGTCGCAACACCGCAA-AGATCTTTTCCCCAAGTTTCAGACAAAAATAAAGCAGCAGAG 59
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AGGTCGCAACACCGCAATAGATCTTTTCCCCAAGTTTCAGACAAACATAAAGCAGCAGAG 60
Query 60 AAAATTTTCAAGTTTCAAAGCA-AATTTGGGTTA-TTTGC-TAA-TTGCAGATACTTTGT 115
|||||||||||||||||||| | ||| | | || || ||| |||| |||||
Sbjct 61 AAAATTTTCAAGTTTCAAAG-AGCTTTTCCCTCACCAAGCAAAATTTG--GATA-TTTGT 116
Query 116 CAGCAATATCTGCAGCTAAATTGGGA-TTGTCTTGTTAGTTCAAAGATCCAAACATTTTT 174
|||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 117 CAGCAAAATCTGCAGCTAAATTGGGACTTGTCTTGTTAGTTCAAAGATTGAAACTTTTTT 176
Query 175 GGTTAATTGTTGCTTTTTGGCGGAAGAAGATTACTACTATGGGAGAGGAGCATCCGAGAA 234
|||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 177 GGTTAA---TTG---TTTGGCGGAAGAAGATT--TACAATGGGAGAGGAGCATCCGAGAA 228
Query 235 AGCGGTCTCGACAACATTTTGAATCAGAGGCGAGACAGGTATCGTTGTTGGAATCCCCTC 294
|||||||| |||||||||||||| | ||||||||| | ||||||||||| ||||||||||
Sbjct 229 AGCGGTCTAGACAACATTTTGAAGCGGAGGCGAGAAACGTATCGTTGTTTGAATCCCCTC 288
Query 295 AATGCGAAACCTCCAAGTGGTATTTCAGCAGGGAAGAGATTGAGCGTTTCTCTCCATCCA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 AATGCGAAACCTCCAAGTGGTATTTCAGCAGGGAAGAGATTGAGCGTTTCTCTCCATCCA 348
Query 355 GAAAAGATGGGATTGACCTGGTGAAGGAGTCGTTTTTACGGTCTTCGTATTGCACCTTCC 414
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GAAAAGATGGGATTGATCTTGTGAAGGAGTCGTTTTTACGGTCTTCGTATTGCACCTTCC 408
Query 415 TGCAAAGACTTGGCATGAAGCTTCATGTGTCCCAGCTTACAATAGCATGTGCAATGGTGA 474
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 409 TGCAAAGACTTGGCATGAAGCTTCATGTGTCCCAGGTTACAATATCATGTGCAATGGTGA 468
Query 475 TGTGCCACAGGTTTTACATGCGCCAATCTCATGCAAAAAATGACTGGCAGACGATAG-GA 533
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 469 TGTGCCACAGGTTTTACATGCGCCAATCTCATGCAAAAAATGACTGGCAGACAATAGCG- 527
Query 534 ACTGCCAGTCTGTTCCTCGCTTGCAAAGCTGAAGATGAACCATGTCAACTGTCCAGTGTC 593
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 528 ACTTCCAGTCTGTTCCTCGCTTGCAAAGCTGAAGATGAGCCATGTCAACTGTCCAGTGTC 587
Query 594 GTTGTAGCGTCTTATGAAATAATTTATGAGTGGGATCCTTCTGCCTCAATTAGAATCCAT 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 GTTGTAGCGTCTTATGAAATAATTTATGAGTGGGATCCTTCTGCCTCAATTAGAATCCAT 647
Query 654 CAATCTGAATGTTACCATGAATTTAAAGAAATTATTTTGGCCGGGGAGAGTCTTCTGCTG 713
||| |||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 648 CAAACTGAGTGTTATCATGAATTTAAAGAAATTATTTTGTCCGGGGAAAGTCTTCTGCTG 707
Query 714 AGCACAAGTGCTTTCCATTTAGACATTGAACTTCCCTACAGACCTCTGGCTGCGGCTTTG 773
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 708 AGCACAAGTGCTTTCCATTTAGACATTGAACTTCCCTACAAACCTCTGGCTGCGGCTTTG 767
Query 774 AATAGACTGAACGCTTGGCCTGACCTTGCAACAGCTGCATGGAATTTTGTGCATGACTGG 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 AATAGACTGAACGCTTGGCCTGACCTTGCAACAGCTGCATGGAATTTTGTGCATGACTGG 827
Query 834 ATTCGAACCACACTATGCTTGCAGTACAAACCCCATGTTATTGCAACGGCCACCGTGCAC 893
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 828 ATTCGAACCACACTATGCTTGCAGTACAAACCCCATGTTATTGCAACAGCCACTGTGCAC 887
Query 894 CTAGCTGCTACGTTTCAGAACGCGAAAGTAGGCAGCAGGAGAGATTGGTGGTTGGAGTTT 953
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 888 CTAGCTGCTACGTTTCAGAATGCGAAAGTAGGCAGCAGGAGAGATTGGTGGTTGGAGTTT 947
Query 954 GGAGTTACAACTAAGCTATTAAAAGAGGTAATCCAGGAGATGTGCACACTGATAGAAGTG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 GGAGTTACAACTAAGCTATTAAAAGAGGTAATCCAGGAGATGTGCACACTGATAGAAGTG 1007
Query 1014 GACAGAAGGAGGAATATGCCACCTCCACCTCCACCTCCAAGAAGAGAGTTAACTTGGGCA 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1008 GACAGAAGGAGGAATATGCCACCTCCACCTCCACCTCCAAGAAGAGAGTTAAGTTGGGCA 1067
Query 1074 ATACCTGCAGCCGTAAAGCCGGTCCATATGGCTAGAGCATATCCGTTTCACAGCTACCCT 1133
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1068 ATACCTGCAGCCGTAAAGCCGGTCCATATGGCTAGAGCTTATCCGTTTCACAGCTACCCT 1127
Query 1134 CTGCAGTCCTATAGACAGGCTGGTATCTGGTAAACCATTGTTGAGCAGCATGAAGATGTA 1193
|||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||
Sbjct 1128 TTGCAGTCCTATAGACAGGCTGGCATCTGGTGAGCCATTGTTGAGCAGCATGAAGATGTA 1187
Query 1194 ATCTCTCTTGGAGTCTTGAGTTTGGTT-AGCAA-AAGAAGATT-CCGTGGAGACTCATGA 1250
||||||||| |||||||||||| |||| ||||| || |||||| |||| |||||||||||
Sbjct 1188 ATCTCTCTTAGAGTCTTGAGTT-GGTTTAGCAATAA-AAGATTTCCGTAGAGACTCATGA 1245
Query 1251 GAGAGGCAATGTAGCATTTATATAGGGATCCGAGTGAGGTGCTTTTGTCTAAGTTAAGCC 1310
|||||||| ||||||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct 1246 GAGAGGCAGTGTAGCATT-ATATAGAGATCCGAGTGAGGTGCTTCTGTCTAAGTTAAGCG 1304
Query 1311 TCTCAGGTGTGACCAAAGTGGATTCTCTCAAGATTCTTAGTCTTTGTTCTCT-TAGAGAG 1369
||||| || |||||||||||||||||||| |||||||| |||| ||||||| |||||||
Sbjct 1305 TCTCATGTATGACCAAAGTGGATTCTCTCGAGATTCTTGGTCTCTGTTCTCGATAGAGAG 1364
Query 1370 AGATTATGTATAGAAGTGTCCCATTCACATGTTATAATACTTG-TAGACTTCATATCGTT 1428
||||||||||||||||||||||||||||||||||||||||| | | ||||| ||||||||
Sbjct 1365 AGATTATGTATAGAAGTGTCCCATTCACATGTTATAATACTAGCT-GACTTTATATCGTT 1423
Query 1429 -GTATATCTGGAAACTATGTTTTTGGTTTCGTTCAAAAGTTCAAA-TTGTTTT--TT--G 1482
|||||||||||| |||||||||||||||| || ||||||| ||| ||||||| || |
Sbjct 1424 TGTATATCTGGAATCTATGTTTTTGGTTTCTTTAAAAAGTTTAAAGTTGTTTTGATTTTG 1483
Query 1483 ACTTGTTCTCTCTTTGTTAAGTAATTTGGTTT 1514
||| ||||||| |||||||||||||||||||
Sbjct 1484 ACTAATTCTCTCATTGTTAAGTAATTTGGTTT 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74698410960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5