BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472968 Length=1514 Score E Sequences producing significant alignments: (Bits) Value AT1G27630.1 | Symbols: CYCT1;3 | cyclin T 1;3 | chr1:9611103-96... 2242 0.0 > AT1G27630.1 | Symbols: CYCT1;3 | cyclin T 1;3 | chr1:9611103-9614336 FORWARD LENGTH=1529 Length=1529 Score = 2242 bits (1214), Expect = 0.0 Identities = 1432/1532 (93%), Gaps = 35/1532 (2%) Strand=Plus/Plus Query 1 AGGTCGCAACACCGCAA-AGATCTTTTCCCCAAGTTTCAGACAAAAATAAAGCAGCAGAG 59 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 AGGTCGCAACACCGCAATAGATCTTTTCCCCAAGTTTCAGACAAACATAAAGCAGCAGAG 60 Query 60 AAAATTTTCAAGTTTCAAAGCA-AATTTGGGTTA-TTTGC-TAA-TTGCAGATACTTTGT 115 |||||||||||||||||||| | ||| | | || || ||| |||| ||||| Sbjct 61 AAAATTTTCAAGTTTCAAAG-AGCTTTTCCCTCACCAAGCAAAATTTG--GATA-TTTGT 116 Query 116 CAGCAATATCTGCAGCTAAATTGGGA-TTGTCTTGTTAGTTCAAAGATCCAAACATTTTT 174 |||||| ||||||||||||||||||| ||||||||||||||||||||| |||| ||||| Sbjct 117 CAGCAAAATCTGCAGCTAAATTGGGACTTGTCTTGTTAGTTCAAAGATTGAAACTTTTTT 176 Query 175 GGTTAATTGTTGCTTTTTGGCGGAAGAAGATTACTACTATGGGAGAGGAGCATCCGAGAA 234 |||||| ||| ||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 177 GGTTAA---TTG---TTTGGCGGAAGAAGATT--TACAATGGGAGAGGAGCATCCGAGAA 228 Query 235 AGCGGTCTCGACAACATTTTGAATCAGAGGCGAGACAGGTATCGTTGTTGGAATCCCCTC 294 |||||||| |||||||||||||| | ||||||||| | ||||||||||| |||||||||| Sbjct 229 AGCGGTCTAGACAACATTTTGAAGCGGAGGCGAGAAACGTATCGTTGTTTGAATCCCCTC 288 Query 295 AATGCGAAACCTCCAAGTGGTATTTCAGCAGGGAAGAGATTGAGCGTTTCTCTCCATCCA 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 289 AATGCGAAACCTCCAAGTGGTATTTCAGCAGGGAAGAGATTGAGCGTTTCTCTCCATCCA 348 Query 355 GAAAAGATGGGATTGACCTGGTGAAGGAGTCGTTTTTACGGTCTTCGTATTGCACCTTCC 414 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 349 GAAAAGATGGGATTGATCTTGTGAAGGAGTCGTTTTTACGGTCTTCGTATTGCACCTTCC 408 Query 415 TGCAAAGACTTGGCATGAAGCTTCATGTGTCCCAGCTTACAATAGCATGTGCAATGGTGA 474 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 409 TGCAAAGACTTGGCATGAAGCTTCATGTGTCCCAGGTTACAATATCATGTGCAATGGTGA 468 Query 475 TGTGCCACAGGTTTTACATGCGCCAATCTCATGCAAAAAATGACTGGCAGACGATAG-GA 533 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 469 TGTGCCACAGGTTTTACATGCGCCAATCTCATGCAAAAAATGACTGGCAGACAATAGCG- 527 Query 534 ACTGCCAGTCTGTTCCTCGCTTGCAAAGCTGAAGATGAACCATGTCAACTGTCCAGTGTC 593 ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 528 ACTTCCAGTCTGTTCCTCGCTTGCAAAGCTGAAGATGAGCCATGTCAACTGTCCAGTGTC 587 Query 594 GTTGTAGCGTCTTATGAAATAATTTATGAGTGGGATCCTTCTGCCTCAATTAGAATCCAT 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 588 GTTGTAGCGTCTTATGAAATAATTTATGAGTGGGATCCTTCTGCCTCAATTAGAATCCAT 647 Query 654 CAATCTGAATGTTACCATGAATTTAAAGAAATTATTTTGGCCGGGGAGAGTCTTCTGCTG 713 ||| |||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 648 CAAACTGAGTGTTATCATGAATTTAAAGAAATTATTTTGTCCGGGGAAAGTCTTCTGCTG 707 Query 714 AGCACAAGTGCTTTCCATTTAGACATTGAACTTCCCTACAGACCTCTGGCTGCGGCTTTG 773 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 708 AGCACAAGTGCTTTCCATTTAGACATTGAACTTCCCTACAAACCTCTGGCTGCGGCTTTG 767 Query 774 AATAGACTGAACGCTTGGCCTGACCTTGCAACAGCTGCATGGAATTTTGTGCATGACTGG 833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 768 AATAGACTGAACGCTTGGCCTGACCTTGCAACAGCTGCATGGAATTTTGTGCATGACTGG 827 Query 834 ATTCGAACCACACTATGCTTGCAGTACAAACCCCATGTTATTGCAACGGCCACCGTGCAC 893 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 828 ATTCGAACCACACTATGCTTGCAGTACAAACCCCATGTTATTGCAACAGCCACTGTGCAC 887 Query 894 CTAGCTGCTACGTTTCAGAACGCGAAAGTAGGCAGCAGGAGAGATTGGTGGTTGGAGTTT 953 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 888 CTAGCTGCTACGTTTCAGAATGCGAAAGTAGGCAGCAGGAGAGATTGGTGGTTGGAGTTT 947 Query 954 GGAGTTACAACTAAGCTATTAAAAGAGGTAATCCAGGAGATGTGCACACTGATAGAAGTG 1013 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 GGAGTTACAACTAAGCTATTAAAAGAGGTAATCCAGGAGATGTGCACACTGATAGAAGTG 1007 Query 1014 GACAGAAGGAGGAATATGCCACCTCCACCTCCACCTCCAAGAAGAGAGTTAACTTGGGCA 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1008 GACAGAAGGAGGAATATGCCACCTCCACCTCCACCTCCAAGAAGAGAGTTAAGTTGGGCA 1067 Query 1074 ATACCTGCAGCCGTAAAGCCGGTCCATATGGCTAGAGCATATCCGTTTCACAGCTACCCT 1133 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1068 ATACCTGCAGCCGTAAAGCCGGTCCATATGGCTAGAGCTTATCCGTTTCACAGCTACCCT 1127 Query 1134 CTGCAGTCCTATAGACAGGCTGGTATCTGGTAAACCATTGTTGAGCAGCATGAAGATGTA 1193 |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| Sbjct 1128 TTGCAGTCCTATAGACAGGCTGGCATCTGGTGAGCCATTGTTGAGCAGCATGAAGATGTA 1187 Query 1194 ATCTCTCTTGGAGTCTTGAGTTTGGTT-AGCAA-AAGAAGATT-CCGTGGAGACTCATGA 1250 ||||||||| |||||||||||| |||| ||||| || |||||| |||| ||||||||||| Sbjct 1188 ATCTCTCTTAGAGTCTTGAGTT-GGTTTAGCAATAA-AAGATTTCCGTAGAGACTCATGA 1245 Query 1251 GAGAGGCAATGTAGCATTTATATAGGGATCCGAGTGAGGTGCTTTTGTCTAAGTTAAGCC 1310 |||||||| ||||||||| |||||| |||||||||||||||||| |||||||||||||| Sbjct 1246 GAGAGGCAGTGTAGCATT-ATATAGAGATCCGAGTGAGGTGCTTCTGTCTAAGTTAAGCG 1304 Query 1311 TCTCAGGTGTGACCAAAGTGGATTCTCTCAAGATTCTTAGTCTTTGTTCTCT-TAGAGAG 1369 ||||| || |||||||||||||||||||| |||||||| |||| ||||||| ||||||| Sbjct 1305 TCTCATGTATGACCAAAGTGGATTCTCTCGAGATTCTTGGTCTCTGTTCTCGATAGAGAG 1364 Query 1370 AGATTATGTATAGAAGTGTCCCATTCACATGTTATAATACTTG-TAGACTTCATATCGTT 1428 ||||||||||||||||||||||||||||||||||||||||| | | ||||| |||||||| Sbjct 1365 AGATTATGTATAGAAGTGTCCCATTCACATGTTATAATACTAGCT-GACTTTATATCGTT 1423 Query 1429 -GTATATCTGGAAACTATGTTTTTGGTTTCGTTCAAAAGTTCAAA-TTGTTTT--TT--G 1482 |||||||||||| |||||||||||||||| || ||||||| ||| ||||||| || | Sbjct 1424 TGTATATCTGGAATCTATGTTTTTGGTTTCTTTAAAAAGTTTAAAGTTGTTTTGATTTTG 1483 Query 1483 ACTTGTTCTCTCTTTGTTAAGTAATTTGGTTT 1514 ||| ||||||| ||||||||||||||||||| Sbjct 1484 ACTAATTCTCTCATTGTTAAGTAATTTGGTTT 1515 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74698410960 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5