BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472969
Length=1300
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sm... 1969 0.0
AT1G27640.1 | Symbols: | Putative role in leaf development. C... 167 3e-40
> AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor
small subunit, putative | chr1:9614551-9616357 FORWARD LENGTH=1405
Length=1405
Score = 1969 bits (1066), Expect = 0.0
Identities = 1242/1321 (94%), Gaps = 35/1321 (3%)
Strand=Plus/Plus
Query 1 CTCGCGAACAAAGCAAACCCTAGATCATCCATCGACGAGTGAGACGGCAGCTCCTCGTCG 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 55 CTCGCGAACAAAGCAAACCCTAGATCATCCATCGGCGAGTGAGACGGCAGCTCCTCGTCG 114
Query 61 GCAAATTCCTCCCACCGGCGGCGACTATTCACCCTCAGA--TCTC--T--CA---ATCTC 111
| ||||||| |||||||||||||| | ||||||||||| |||| | || |||||
Sbjct 115 G-TAATTCCTTCCACCGGCGGCGACCACTCACCCTCAGATCTCTCAATCCCACTCATCTC 173
Query 112 TATAACATTTTGGTGGAAATTCTGCCATGGCGGAGCATTTGGCTTCAATTTTTGGTACTG 171
| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 174 TGTAACATTCTGGTGGAAATTCTGCCATGGCGGAGCATTTGGCTTCAATCTTTGGTACTG 233
Query 172 AGAAGGACAGAGTGAATTGCCCATTCTACTTCAAGATTGGCGCTTGCCGTCATGGTGACC 231
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 234 AGAAAGACAGAGTGAATTGCCCTTTCTACTTCAAGATTGGCGCTTGCCGTCATGGTGACC 293
Query 232 GGTGCTCTCGTCTTCACAACCGTCCTACCATCTCCCCAACACTCCTTCTTTCCAACATGT 291
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 294 GGTGCTCGCGTCTTCACAACCGTCCTACCATCTCCCCAACACTCCTTCTTTCAAACATGT 353
Query 292 ACCAAAGGCCTGACATGATAACCCCTGGTGTTGACGCTCAGGGCCAACCGCTCGACCCGC 351
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 354 ACCAAAGGCCTGACATGATTACCCCTGGTGTTGACGCTCAGGGCCAACCACTCGACCCGC 413
Query 352 GTAAGATCCAAGAGCACTTTGAGGATTTCTTTGAGGATCTTTTTGAGGAACTCGGAAAGT 411
||||||| || |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 414 GTAAGATTCAGGAGCACTTTGAGGATTTCTTTGAGGATCTTTTTGAGGAGCTTGGAAAGT 473
Query 412 TTGGCGAGATAGAAAGCCTCAACATTTGTGACAACCTTGCTGACCACATGATTGGCAACG 471
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TTGGCGAGATAGAGAGCCTCAACATTTGTGACAACCTTGCTGACCACATGATTGGCAACG 533
Query 472 TATATGTTCAGTTTAAGGAAGAGGATCAGGCTGCAGCTGCTTTGCAGGCTCTGCAAGGTA 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TATATGTTCAGTTTAAGGAAGAGGATCAGGCTGCAGCTGCTTTGCAGGCTCTGCAAGGTA 593
Query 532 GGTTCTATTCAGGACGTCCCATCATTGCGGATTTCTCTCCTGTGACGGATTTCCGCGAAG 591
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 594 GGTTCTATTCAGGACGTCCCATCATTGCTGATTTCTCTCCTGTGACGGATTTCCGCGAAG 653
Query 592 CCACGTGTAGGCAGTATGAAGAAAACAACTGCAACCGTGGTGGCTACTGTAATTTCATGC 651
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 654 CCACGTGTAGGCAGTATGAAGAAAACAACTGCAACCGTGGTGGGTACTGTAATTTCATGC 713
Query 652 ATGTGAAGCTTGTTTCGAGGGAACTAAGGAGAAAACTCTTTGGGAGATATCGGCGGTCAT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 714 ATGTGAAGCTTGTTTCGAGGGAACTAAGGAGAAAACTCTTTGGGAGATATCGGCGATCAT 773
Query 712 ACCGCAGGGGAAGCAGAAGCAGGAGCAGAAGCAGAAGTATTAGCCCCAGGAACAAGAGAG 771
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 774 ACCGCAGAGGAAGTAGAAGCAGGAGCAGAAGCAGGAGTATTAGCCCCAGGAACAAGAGAG 833
Query 772 AGTA-TGACCGACGTGATCCTCCTCACAGGGAATTCAGTCA-CAGGGACAGAGATCGCGA 829
| || |||||||||||||||| ||||||||||||||||||| | ||||||||||||||||
Sbjct 834 A-TAATGACCGACGTGATCCTTCTCACAGGGAATTCAGTCATC-GGGACAGAGATCGCGA 891
Query 830 GTTTTACCGTCATGGAAGCGGGAAAAGGAGCAGTGAGAGGTCGGAGAGGCAAGAAAGGGA 889
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 892 GTTTTACCGTCATGGAAGTGGAAAAAGGAGCAGTGAGAGGTCGGAGAGGCAAGAGAGGGA 951
Query 890 TGGATCAAGGGGTAGGAGACAAGCAAGCCCTAAACGAGGAGGGAGCCCGGGTGGCGGTAG 949
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 952 CGGTTCAAGGGGTAGGAGACAAGCAAGCCCTAAACGAGGAGGGAGCCCGGGTGGCGGGAG 1011
Query 950 AGAAGGAAGTgaggagaggagggcaaggattgagcaatggaacagagaacgggaggagaa 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GGAAGGAAGTGAGGAGAGGAGGGCAAGGATTGAGCAATGGAACAGAGAACGGGAGGAGAA 1071
Query 1010 ggaagagggaggagCATAAAA-CAGTTGGTTACTCAGATCATAATTGCTGCTATGTGGTT 1068
||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||
Sbjct 1072 GGAAGAGGGAGGAGCATAAAAACAGTTGTTTACTCAAATCACAATTGCTGCTATGTGGTT 1131
Query 1069 TCTGCGTCTGCTTCTCTGCGTTTGCTGATTGTTTCTGAAATCGGTAAAATCTGGTGATGG 1128
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1132 TCTGCGTCTGCTTCTCTGCGTTT----ATT----CTGAAATCGGTAAAATCTGGTGATGG 1183
Query 1129 ATTTTTCATTTGGTTGTTCTAATTTGGAACTTGAAATGAGTGGAATCAACTCCTTTAGAT 1188
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1184 ATTTTTCATTTGGCTGTTCTAATTTGGAACTTGAAATGAGTGGAATCAACTTCTTTAGAT 1243
Query 1189 TATAAAATGTTTGGGGTTACTTTCTTGTAGTTTTGATTAGGAAAAACCG-T-TGTTGCCT 1246
||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 1244 TATAAAATGTTTGGGGTTACTTTCTTGTAGTTTTGATTAGGAAAAACCGCTCTGTCCCCT 1303
Query 1247 CGTCCCCTTG-TT---A---GTGTTCCTTAGAACTTTGTACTATCTTCTGTTGGTTTAAA 1299
|| ||| || | |||||| ||||||||||||||||||||||||||||| |||
Sbjct 1304 TGTTA--TTGATTTTCACCAGTGTTCTTTAGAACTTTGTACTATCTTCTGTTGGTT-AAA 1360
Query 1300 A 1300
|
Sbjct 1361 A 1361
> AT1G27640.1 | Symbols: | Putative role in leaf development.
Comparison of SALK_123839C to Columbia under normal growth
conditions resulted in a trend toward increased leaf length
in the mutant (P=0.13; median 22 for mutant,17 for Columbia)
(Ann Stapleton and Delita Pardue, 2009, personal communication).
| chr1:9614463-9614906 REVERSE LENGTH=444
Length=444
Score = 167 bits (90), Expect = 3e-40
Identities = 103/109 (94%), Gaps = 1/109 (1%)
Strand=Plus/Minus
Query 1 CTCGCGAACAAAGCAAACCCTAGATCATCCATCGACGAGTGAGACGGCAGCTCCTCGTCG 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 302 CTCGCGAACAAAGCAAACCCTAGATCATCCATCGGCGAGTGAGACGGCAGCTCCTCGTCG 243
Query 61 GCAAATTCCTCCCACCGGCGGCGACTATTCACCCTCAGATCTCTCAATC 109
| || ||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 242 GTAA-TTCCTTCCACCGGCGGCGACCACTCACCCTCAGATCTCTCAATC 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63955494330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5