BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472969 Length=1300 Score E Sequences producing significant alignments: (Bits) Value AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor sm... 1969 0.0 AT1G27640.1 | Symbols: | Putative role in leaf development. C... 167 3e-40 > AT1G27650.1 | Symbols: ATU2AF35A | U2 snRNP auxiliary factor small subunit, putative | chr1:9614551-9616357 FORWARD LENGTH=1405 Length=1405 Score = 1969 bits (1066), Expect = 0.0 Identities = 1242/1321 (94%), Gaps = 35/1321 (3%) Strand=Plus/Plus Query 1 CTCGCGAACAAAGCAAACCCTAGATCATCCATCGACGAGTGAGACGGCAGCTCCTCGTCG 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 55 CTCGCGAACAAAGCAAACCCTAGATCATCCATCGGCGAGTGAGACGGCAGCTCCTCGTCG 114 Query 61 GCAAATTCCTCCCACCGGCGGCGACTATTCACCCTCAGA--TCTC--T--CA---ATCTC 111 | ||||||| |||||||||||||| | ||||||||||| |||| | || ||||| Sbjct 115 G-TAATTCCTTCCACCGGCGGCGACCACTCACCCTCAGATCTCTCAATCCCACTCATCTC 173 Query 112 TATAACATTTTGGTGGAAATTCTGCCATGGCGGAGCATTTGGCTTCAATTTTTGGTACTG 171 | ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 174 TGTAACATTCTGGTGGAAATTCTGCCATGGCGGAGCATTTGGCTTCAATCTTTGGTACTG 233 Query 172 AGAAGGACAGAGTGAATTGCCCATTCTACTTCAAGATTGGCGCTTGCCGTCATGGTGACC 231 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 234 AGAAAGACAGAGTGAATTGCCCTTTCTACTTCAAGATTGGCGCTTGCCGTCATGGTGACC 293 Query 232 GGTGCTCTCGTCTTCACAACCGTCCTACCATCTCCCCAACACTCCTTCTTTCCAACATGT 291 ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 294 GGTGCTCGCGTCTTCACAACCGTCCTACCATCTCCCCAACACTCCTTCTTTCAAACATGT 353 Query 292 ACCAAAGGCCTGACATGATAACCCCTGGTGTTGACGCTCAGGGCCAACCGCTCGACCCGC 351 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 354 ACCAAAGGCCTGACATGATTACCCCTGGTGTTGACGCTCAGGGCCAACCACTCGACCCGC 413 Query 352 GTAAGATCCAAGAGCACTTTGAGGATTTCTTTGAGGATCTTTTTGAGGAACTCGGAAAGT 411 ||||||| || |||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 414 GTAAGATTCAGGAGCACTTTGAGGATTTCTTTGAGGATCTTTTTGAGGAGCTTGGAAAGT 473 Query 412 TTGGCGAGATAGAAAGCCTCAACATTTGTGACAACCTTGCTGACCACATGATTGGCAACG 471 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 TTGGCGAGATAGAGAGCCTCAACATTTGTGACAACCTTGCTGACCACATGATTGGCAACG 533 Query 472 TATATGTTCAGTTTAAGGAAGAGGATCAGGCTGCAGCTGCTTTGCAGGCTCTGCAAGGTA 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 TATATGTTCAGTTTAAGGAAGAGGATCAGGCTGCAGCTGCTTTGCAGGCTCTGCAAGGTA 593 Query 532 GGTTCTATTCAGGACGTCCCATCATTGCGGATTTCTCTCCTGTGACGGATTTCCGCGAAG 591 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 594 GGTTCTATTCAGGACGTCCCATCATTGCTGATTTCTCTCCTGTGACGGATTTCCGCGAAG 653 Query 592 CCACGTGTAGGCAGTATGAAGAAAACAACTGCAACCGTGGTGGCTACTGTAATTTCATGC 651 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 654 CCACGTGTAGGCAGTATGAAGAAAACAACTGCAACCGTGGTGGGTACTGTAATTTCATGC 713 Query 652 ATGTGAAGCTTGTTTCGAGGGAACTAAGGAGAAAACTCTTTGGGAGATATCGGCGGTCAT 711 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 714 ATGTGAAGCTTGTTTCGAGGGAACTAAGGAGAAAACTCTTTGGGAGATATCGGCGATCAT 773 Query 712 ACCGCAGGGGAAGCAGAAGCAGGAGCAGAAGCAGAAGTATTAGCCCCAGGAACAAGAGAG 771 ||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 774 ACCGCAGAGGAAGTAGAAGCAGGAGCAGAAGCAGGAGTATTAGCCCCAGGAACAAGAGAG 833 Query 772 AGTA-TGACCGACGTGATCCTCCTCACAGGGAATTCAGTCA-CAGGGACAGAGATCGCGA 829 | || |||||||||||||||| ||||||||||||||||||| | |||||||||||||||| Sbjct 834 A-TAATGACCGACGTGATCCTTCTCACAGGGAATTCAGTCATC-GGGACAGAGATCGCGA 891 Query 830 GTTTTACCGTCATGGAAGCGGGAAAAGGAGCAGTGAGAGGTCGGAGAGGCAAGAAAGGGA 889 |||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||| Sbjct 892 GTTTTACCGTCATGGAAGTGGAAAAAGGAGCAGTGAGAGGTCGGAGAGGCAAGAGAGGGA 951 Query 890 TGGATCAAGGGGTAGGAGACAAGCAAGCCCTAAACGAGGAGGGAGCCCGGGTGGCGGTAG 949 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 952 CGGTTCAAGGGGTAGGAGACAAGCAAGCCCTAAACGAGGAGGGAGCCCGGGTGGCGGGAG 1011 Query 950 AGAAGGAAGTgaggagaggagggcaaggattgagcaatggaacagagaacgggaggagaa 1009 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1012 GGAAGGAAGTGAGGAGAGGAGGGCAAGGATTGAGCAATGGAACAGAGAACGGGAGGAGAA 1071 Query 1010 ggaagagggaggagCATAAAA-CAGTTGGTTACTCAGATCATAATTGCTGCTATGTGGTT 1068 ||||||||||||||||||||| |||||| ||||||| |||| |||||||||||||||||| Sbjct 1072 GGAAGAGGGAGGAGCATAAAAACAGTTGTTTACTCAAATCACAATTGCTGCTATGTGGTT 1131 Query 1069 TCTGCGTCTGCTTCTCTGCGTTTGCTGATTGTTTCTGAAATCGGTAAAATCTGGTGATGG 1128 ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 1132 TCTGCGTCTGCTTCTCTGCGTTT----ATT----CTGAAATCGGTAAAATCTGGTGATGG 1183 Query 1129 ATTTTTCATTTGGTTGTTCTAATTTGGAACTTGAAATGAGTGGAATCAACTCCTTTAGAT 1188 ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1184 ATTTTTCATTTGGCTGTTCTAATTTGGAACTTGAAATGAGTGGAATCAACTTCTTTAGAT 1243 Query 1189 TATAAAATGTTTGGGGTTACTTTCTTGTAGTTTTGATTAGGAAAAACCG-T-TGTTGCCT 1246 ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| Sbjct 1244 TATAAAATGTTTGGGGTTACTTTCTTGTAGTTTTGATTAGGAAAAACCGCTCTGTCCCCT 1303 Query 1247 CGTCCCCTTG-TT---A---GTGTTCCTTAGAACTTTGTACTATCTTCTGTTGGTTTAAA 1299 || ||| || | |||||| ||||||||||||||||||||||||||||| ||| Sbjct 1304 TGTTA--TTGATTTTCACCAGTGTTCTTTAGAACTTTGTACTATCTTCTGTTGGTT-AAA 1360 Query 1300 A 1300 | Sbjct 1361 A 1361 > AT1G27640.1 | Symbols: | Putative role in leaf development. Comparison of SALK_123839C to Columbia under normal growth conditions resulted in a trend toward increased leaf length in the mutant (P=0.13; median 22 for mutant,17 for Columbia) (Ann Stapleton and Delita Pardue, 2009, personal communication). | chr1:9614463-9614906 REVERSE LENGTH=444 Length=444 Score = 167 bits (90), Expect = 3e-40 Identities = 103/109 (94%), Gaps = 1/109 (1%) Strand=Plus/Minus Query 1 CTCGCGAACAAAGCAAACCCTAGATCATCCATCGACGAGTGAGACGGCAGCTCCTCGTCG 60 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 302 CTCGCGAACAAAGCAAACCCTAGATCATCCATCGGCGAGTGAGACGGCAGCTCCTCGTCG 243 Query 61 GCAAATTCCTCCCACCGGCGGCGACTATTCACCCTCAGATCTCTCAATC 109 | || ||||| |||||||||||||| | ||||||||||||||||||||| Sbjct 242 GTAA-TTCCTTCCACCGGCGGCGACCACTCACCCTCAGATCTCTCAATC 195 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63955494330 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5